Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006558

Physical Location & Seq

Genomic Coordinates Forward (+)

7709226 .. 7712890

Gene Structure 3665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATATTTATTTGGGTCCCTGTTTTTCTTATGCTTACCATAGCCCATGAGCAGACTGCTGCGGTTATTGATGGGAAGTCTATCGCGGACGATATTAGGTCAAGAATAGGGAGTGAGGTAAGGAGGATGAAAGAGAGCATTGGAATGGTGCCTGGGTTGGGTGTAATTATGGTTGGTCAGAGAAAGGACTCTGAGACTTATGTCCGGAACAAGATGATGGCTTGTGAAGAAGTTGGAATCAAATCAAATGTGGCTCACCTGCCTGAGCATTGTACAAAAGATCAGCTTCTTAAAGCATTGTCAAAGTTTGATGTGGATCCCTCTGTTCATGGTATTCTCGTGCAACTTCCTCTACCACAACATTTGGATGAGAGAAAAATTATGGATGTGCTGAGTCCAGAGAAAGATGTGGATGGCTTCCATCCAATTAATATGGGAAATCTTGCCATGAGAGGAAGGGAGCCTATGTTTATTCCATGCACTCCAAAGGGTTGCATTGAGTTGTTGCTCAGGTCTGGCGTGGAAATCGTTGGGAAGAAAGCTGCTGTCATTGGCAGAAGTAATATTGTAGGATTACCTACATCGTTGCTTTTGCAGAGGCACCATGCAACAGTCAGCATTGTACATGCATTCACAAAGAACCCAGAACATATCACCTGTGAAGCTGACATTGTGGTCACAGCTGCAGGAGTGCCTAATCTTGTCCGTGGAAATTGGCTAAAACCTGGAGCAGTTGTCATCGACGTTGGGACCAATCCAGTTGAGGACCCTAGCTGTGAGCGAGGTTATCGCCTCATAGGAGATGTTTGCTATGAAGAAGCAGTGCGGGTGGTGTCAGCCATTACCCCAGTTCCTGGTGGAGTTGGACCCATGACAATTGCTATGCTTCTATCAAATACTCTTGATTCAGCAAAGCGAGCCTATGCCTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

311

Amino Acids

33.82

Weight (kDa)

6.79

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	23 - 138	8e-40	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	159 - 307	1e-56	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660
fragaria_vesca	FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070
malus_domestica	MD04G1181400.v1.1
prunus_persica	Prupe.6G300800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459301
rosa_laevigata	RLG00000025095
rosa_multiflora	Rmu_co8497659.1_g000001 Rmu_sc0032631.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420300
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG093000 Rh3BG096100 Rh3CG097100 Rh3DG096700
rosa_wichuraiana	Rw3G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	267
AasI	GACNNNNNNGTC	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	2 cut(s)	148, 600
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	204
AciI	CCGC	3 cut(s)	62, 86, 826
AclWI	GGATC	2 cut(s)	311, 324
AfaI	GTAC	2 cut(s)	274, 624
AfiI	CCNNNNNNNGG	2 cut(s)	158, 854
AjnI	CCWGG	3 cut(s)	151, 724, 853
AluBI	AGCT	5 cut(s)	286, 542, 665, 683, 774
AluI	AGCT	5 cut(s)	286, 542, 665, 683, 774
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	311, 324
AlwNI	CAGNNNCTG	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	59, 542, 683
AseI	ATTAAT	1 cut(s)	429
AspS9I	GGNCC	4 cut(s)	16, 750, 766, 866
AsuHPI	GGTGA	2 cut(s)	248, 646
AvaII	GGWCC	4 cut(s)	16, 750, 766, 866
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	148, 600
BauI	CACGAG	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	46, 529, 670
BccI	CCATC	4 cut(s)	65, 211, 407, 429
BciT130I	CCWGG	3 cut(s)	153, 726, 855
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	3 cut(s)	60, 543, 684
BlsI	GCNGC	3 cut(s)	61, 544, 685
Bme1390I	CCNGG	3 cut(s)	153, 726, 855
Bme18I	GGWCC	4 cut(s)	16, 750, 766, 866
BmgT120I	GGNCC	4 cut(s)	16, 750, 766, 866
BmiI	GGNNCC	9 cut(s)	17, 18, 150, 318, 462, 602, 751, 768, 868
BmrFI	CCNGG	3 cut(s)	153, 726, 855
BmrI	ACTGGG	1 cut(s)	842
BmuI	ACTGGG	1 cut(s)	842
BoxI	GACNNNNGTC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	2 cut(s)	264, 509
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	152, 706
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	4 cut(s)	452, 482, 720, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 854
Bse1I	ACTGG	2 cut(s)	758, 848
Bse8I	GATNNNNATC	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	153, 726, 855
BseDI	CCNNGG	2 cut(s)	152, 706
BseGI	GGATG	5 cut(s)	132, 373, 391, 418, 421
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	158, 854
BseMII	CTCAG	4 cut(s)	183, 255, 383, 523
BseNI	ACTGG	2 cut(s)	758, 848
BseXI	GCAGC	3 cut(s)	46, 529, 670
Bsh1236I	CGCG	1 cut(s)	86
BshNI	GGYRCC	2 cut(s)	148, 600
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	2, 763
BslI	CCNNNNNNNGG	2 cut(s)	158, 854
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	2, 763
BsmI	GAATGC	1 cut(s)	629
Bsp13I	TCCGGA	1 cut(s)	204
Bsp1407I	TGTACA	2 cut(s)	272, 622
Bsp143I	GATC	2 cut(s)	280, 316
BspACI	CCGC	3 cut(s)	62, 86, 826
BspCNI	CTCAG	4 cut(s)	184, 256, 384, 522
BspEI	TCCGGA	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	9 cut(s)	17, 18, 150, 318, 462, 602, 751, 768, 868
BspMAI	CTGCAG	1 cut(s)	688
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	311, 324
BspT107I	GGYRCC	2 cut(s)	148, 600
BsrGI	TGTACA	2 cut(s)	272, 622
BsrI	ACTGG	2 cut(s)	758, 848
BssECI	CCNNGG	2 cut(s)	152, 706
BssMI	GATC	2 cut(s)	280, 316
BssSI	CACGAG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	338
Bst2UI	CCWGG	3 cut(s)	153, 726, 855
Bst4CI	ACNGT	1 cut(s)	613
BstAUI	TGTACA	2 cut(s)	272, 622
BstC8I	GCNNGC	1 cut(s)	918
BstDEI	CTNAG	4 cut(s)	192, 264, 392, 509
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	5 cut(s)	132, 373, 391, 418, 421
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	283, 319
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	280, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	917
BstNI	CCWGG	3 cut(s)	153, 726, 855
BstNSI	RCATGY	1 cut(s)	629
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	3 cut(s)	151, 724, 853
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	46, 529, 670
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	706
BtsCI	GGATG	5 cut(s)	132, 373, 391, 418, 421
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	918
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr13I	GGNCC	4 cut(s)	16, 750, 766, 866
Csp6I	GTAC	2 cut(s)	273, 623
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	7 cut(s)	47, 329, 448, 477, 605, 626, 871
CviQI	GTAC	2 cut(s)	273, 623
DdeI	CTNAG	4 cut(s)	192, 264, 392, 509
DpnI	GATC	2 cut(s)	282, 318
DpnII	GATC	2 cut(s)	280, 316
DrdI	GACNNNNNNGTC	1 cut(s)	674
DseDI	GACNNNNNNGTC	1 cut(s)	674
Eco47I	GGWCC	4 cut(s)	16, 750, 766, 866
EcoO109I	RGGNCCY	2 cut(s)	16, 766
EcoRII	CCWGG	3 cut(s)	151, 724, 853
EcoT22I	ATGCAT	1 cut(s)	631
FaeI	CATG	7 cut(s)	50, 332, 451, 480, 608, 629, 874
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	2, 763
FatI	CATG	7 cut(s)	46, 328, 447, 476, 604, 625, 870
FauI	CCCGC	1 cut(s)	819
Fnu4HI	GCNGC	3 cut(s)	60, 543, 684
FokI	GGATG	5 cut(s)	139, 380, 398, 408, 425
Fsp4HI	GCNGC	3 cut(s)	60, 543, 684
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	3 cut(s)	60, 543, 684
GsuI	CTGGAG	1 cut(s)	747
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	7 cut(s)	50, 332, 451, 480, 608, 629, 874
HinfI	GANTC	4 cut(s)	188, 237, 394, 905
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	248, 646
Hpy188I	TCNGA	2 cut(s)	180, 193
Hpy188III	TCNNGA	4 cut(s)	102, 205, 398, 902
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	744
HpyCH4V	TGCA	7 cut(s)	343, 480, 495, 595, 608, 629, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	917
HpyF3I	CTNAG	4 cut(s)	192, 264, 392, 509
HpySE526I	ACGT	1 cut(s)	744
Hsp92II	CATG	7 cut(s)	50, 332, 451, 480, 608, 629, 874
KflI	GGGWCCC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	280, 316
LmnI	GCTCC	2 cut(s)	460, 728
Lsp1109I	GCAGC	3 cut(s)	46, 529, 670
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	744
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	2 cut(s)	282, 318
MboI	GATC	2 cut(s)	280, 316
MboII	GAAGA	3 cut(s)	239, 547, 827
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	5 cut(s)	165, 378, 426, 712, 876
MlyI	GAGTC	2 cut(s)	182, 403
MmeI	TCCRAC	2 cut(s)	214, 844
MnlI	CCTC	9 cut(s)	109, 117, 331, 360, 446, 591, 757, 776, 803
Mph1103I	ATGCAT	1 cut(s)	631
MroI	TCCGGA	1 cut(s)	204
MseI	TTAA	2 cut(s)	291, 429
MslI	CAYNNNNRTG	2 cut(s)	143, 366
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	3 cut(s)	153, 726, 855
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	3 cut(s)	153, 726, 855
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	917
NdeII	GATC	2 cut(s)	280, 316
NlaIII	CATG	7 cut(s)	50, 332, 451, 480, 608, 629, 874
NlaIV	GGNNCC	9 cut(s)	17, 18, 150, 318, 462, 602, 751, 768, 868
NmuCI	GTSAC	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	631
NspI	RCATGY	1 cut(s)	629
PaqCI	CACCTGC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	237, 905
PflMI	CCANNNNNTGG	1 cut(s)	854
PkrI	GCNGC	3 cut(s)	61, 544, 685
PleI	GAGTC	2 cut(s)	182, 402
PpsI	GAGTC	2 cut(s)	182, 402
PpuMI	RGGWCCY	2 cut(s)	16, 766
PshAI	GACNNNNGTC	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	429
Psp5II	RGGWCCY	2 cut(s)	16, 766
Psp6I	CCWGG	3 cut(s)	151, 724, 853
PspGI	CCWGG	3 cut(s)	151, 724, 853
PspN4I	GGNNCC	9 cut(s)	17, 18, 150, 318, 462, 602, 751, 768, 868
PspPI	GGNCC	4 cut(s)	16, 750, 766, 866
PspPPI	RGGWCCY	2 cut(s)	16, 766
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	274, 624
RsaNI	GTAC	2 cut(s)	273, 623
RseI	CAYNNNNRTG	2 cut(s)	143, 366
SaqAI	TTAA	2 cut(s)	291, 429
SatI	GCNGC	3 cut(s)	60, 543, 684
Sau3AI	GATC	2 cut(s)	280, 316
Sau96I	GGNCC	4 cut(s)	16, 750, 766, 866
SchI	GAGTC	2 cut(s)	182, 403
ScrFI	CCNGG	3 cut(s)	153, 726, 855
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	4 cut(s)	16, 750, 766, 866
SmiMI	CAYNNNNRTG	2 cut(s)	143, 366
Sse9I	AATT	5 cut(s)	165, 378, 426, 712, 876
SsiI	CCGC	3 cut(s)	62, 86, 826
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	151, 724, 853
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	747
TaqI	TCGA	1 cut(s)	741
TasI	AATT	5 cut(s)	165, 378, 426, 712, 876
TatI	WGTACW	2 cut(s)	272, 622
TfiI	GAWTC	2 cut(s)	237, 905
Tru1I	TTAA	2 cut(s)	291, 429
Tru9I	TTAA	2 cut(s)	291, 429
TscAI	CASTG	1 cut(s)	828
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	3 cut(s)	59, 542, 683
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	3 cut(s)	143, 317, 828
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	1 cut(s)	828
Van91I	CCANNNNNTGG	1 cut(s)	854
VpaK11BI	GGWCC	4 cut(s)	16, 750, 766, 866
VspI	ATTAAT	1 cut(s)	429
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	1 cut(s)	771
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.