Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006558

Physical Location & Seq

Genomic Coordinates Reverse (-)

27297837 .. 27300371

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G300800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGATTCCGAGAGTGGCATTGCCATGGCGGAATGGACTGAGATTGAGAGTTCCATCAGGAAGCAGAGGCTGCTGCAGAAGCGCCCATAACACCTTAAGAAACGACGATGGCCGCCCAATTGTAATCTCTCCTCCTCTTGTCTCTCTAGACATACCTGATGATTGGGCTCCCTGCCCTGCACACTCTTGTTTCTCTTCCCCTATAAGTTCCTCTAACGAGCAGACAGCTACTGTTATTGATGGGAAGTTTATTGCGGATGAAATTAAGACAAGAATAGGCAGTGAGGTGAGGAGGATGAAAGAGGGCATTGGAATGGTGCCTGGGTTGGCGGTGATTGTGGTGGGTTATAGAAGGGACTCTCAGACTTATGTCCGTAACAAGATGATGGCTTGTGCAGAAGTTGGGATTAAGTCCATGGTTGCTCAGCTGCCTGAAGATTGCACAAAAGATCAACTTCTTGGCGCTTTGTCTAGTTTTGATGGGGATCCCTCTGTTCACGGTATTCTCGTCCAACTTCCTCTACCACAACATTTGGATGAGGGAAAAGTTTTGGATGTGCTGAGACCAGAGAAAGATGTGGATGGCTTCCATCCACTTAATATGGGAAATCTTGCCATGAGAGGAAGGGAGCCTTTGTTCATTCCCTGCACTCCCAAGGGTTGCATTGAGATGTTGCTCAGGTCTGGTGTGGAAATAGCGGGGAGGAAAGCTACTGTGATTGGGAGAAGTAACATTGTTGGATTGCCCACATCATTGCTGTTGCAGAGGCACCATGCAACAGTCAGCATTGTACATGCCTTCACAAAGAACCCAGAACTTATCACCTGTGAAGCTGACATTGTGGTCACGGCAGCAGGAGTGCCGAATCTGGTCCGTGGAAATTGGCTAAAGCCCGGAGCAGTTGTTATCGATGTTGGAACTAATCCAGTTGAGGACCCCAGCTCGGAGCATGGTTACCGCCTCACAGGGGATGTTTGCTATGAAGAAGCAGTGCGGGTGGCATCAGCCATCACCCCAGTGCCCGGAGGAGTTGGACCCATGACAATTGCCATGCTCCTATCAAACACTCTTGATTCAGCAAAGCGAGTTTATGCCTTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

368

Amino Acids

39.49

Weight (kDa)

7.09

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660
fragaria_vesca	FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070
malus_domestica	MD04G1181400.v1.1
prunus_persica	Prupe.6G300800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459301
rosa_laevigata	RLG00000025095
rosa_multiflora	Rmu_co8497659.1_g000001 Rmu_sc0032631.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420300
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG093000 Rh3BG096100 Rh3CG097100 Rh3DG096700
rosa_wichuraiana	Rw3G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	842
AccB1I	GGYRCC	2 cut(s)	316, 768
AciI	CCGC	7 cut(s)	28, 112, 254, 329, 698, 958, 994
AclWI	GGATC	2 cut(s)	479, 492
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	792
AfiI	CCNNNNNNNGG	3 cut(s)	943, 967, 1022
AflII	CTTAAG	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	319
AleI	CACNNNNGTG	1 cut(s)	1016
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	5 cut(s)	227, 427, 710, 833, 942
AluI	AGCT	5 cut(s)	227, 427, 710, 833, 942
Alw26I	GTCTC	2 cut(s)	145, 556
AlwI	GGATC	2 cut(s)	479, 492
AlwNI	CAGNNNCTG	2 cut(s)	69, 230
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	4 cut(s)	69, 72, 427, 851
AspLEI	GCGC	2 cut(s)	83, 464
AspS9I	GGNCC	3 cut(s)	871, 934, 1034
AsuC2I	CCSGG	2 cut(s)	894, 1023
AsuHPI	GGTGA	4 cut(s)	298, 343, 814, 1003
AvaII	GGWCC	3 cut(s)	871, 934, 1034
BaeGI	GKGCMC	1 cut(s)	1023
BamHI	GGATCC	1 cut(s)	484
BanI	GGYRCC	2 cut(s)	316, 768
BanII	GRGCYC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	56, 59, 414, 863
BccI	CCATC	8 cut(s)	61, 101, 233, 379, 473, 575, 597, 1016
BceAI	ACGGC	1 cut(s)	864
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	2 cut(s)	894, 1023
BcoDI	GTCTC	2 cut(s)	145, 556
BfaI	CTAG	2 cut(s)	146, 471
BfmI	CTRYAG	1 cut(s)	73
BfoI	RGCGCY	2 cut(s)	84, 465
BfrI	CTTAAG	1 cut(s)	94
BisI	GCNGC	5 cut(s)	70, 73, 112, 428, 852
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	5 cut(s)	71, 74, 113, 429, 853
Bme1390I	CCNGG	3 cut(s)	321, 894, 1023
Bme18I	GGWCC	3 cut(s)	871, 934, 1034
BmgT120I	GGNCC	3 cut(s)	871, 934, 1034
BmiI	GGNNCC	7 cut(s)	168, 318, 486, 630, 770, 936, 1036
BmrFI	CCNGG	3 cut(s)	321, 894, 1023
BmrI	ACTGGG	1 cut(s)	1010
BmsI	GCATC	1 cut(s)	1010
BmuI	ACTGGG	1 cut(s)	1010
BoxI	GACNNNNGTC	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	677
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	894, 1023
Bsa29I	ATCGAT	1 cut(s)	909
BsaBI	GATNNNNATC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	5 cut(s)	23, 320, 414, 654, 874
BsaXI	ACNNNNNCTCC	4 cut(s)	620, 650, 888, 918
Bsc4I	CCNNNNNNNGG	3 cut(s)	943, 967, 1022
Bse1I	ACTGG	2 cut(s)	926, 1016
Bse3DI	GCAATG	2 cut(s)	17, 752
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	909
BseDI	CCNNGG	5 cut(s)	23, 320, 414, 654, 874
BseGI	GGATG	7 cut(s)	262, 300, 541, 559, 586, 589, 976
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	3 cut(s)	943, 967, 1022
BseMI	GCAATG	2 cut(s)	17, 752
BseMII	CTCAG	5 cut(s)	29, 374, 437, 551, 691
BseNI	ACTGG	2 cut(s)	926, 1016
BseRI	GAGGAG	4 cut(s)	120, 123, 304, 1041
BseSI	GKGCMC	1 cut(s)	1023
BseXI	GCAGC	4 cut(s)	56, 59, 414, 863
BseYI	CCCAGC	1 cut(s)	938
BsgI	GTGCAG	3 cut(s)	162, 414, 631
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	2 cut(s)	316, 768
BshVI	ATCGAT	1 cut(s)	909
BsiSI	CCGG	2 cut(s)	894, 1023
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	943, 967, 1022
BsmAI	GTCTC	2 cut(s)	145, 556
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	169, 1023
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	2 cut(s)	448, 484
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	2 cut(s)	23, 414
BspACI	CCGC	7 cut(s)	28, 112, 254, 329, 698, 958, 994
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	5 cut(s)	30, 373, 436, 552, 690
BspDI	ATCGAT	1 cut(s)	909
BspLI	GGNNCC	7 cut(s)	168, 318, 486, 630, 770, 936, 1036
BspMAI	CTGCAG	1 cut(s)	77
BspPI	GGATC	2 cut(s)	479, 492
BspT107I	GGYRCC	2 cut(s)	316, 768
BspTI	CTTAAG	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	556
BsrDI	GCAATG	2 cut(s)	17, 752
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	2 cut(s)	926, 1016
BssECI	CCNNGG	5 cut(s)	23, 320, 414, 654, 874
BssMI	GATC	2 cut(s)	448, 484
BssT1I	CCWWGG	3 cut(s)	23, 414, 654
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	4 cut(s)	232, 500, 715, 781
Bst6I	CTCTTC	1 cut(s)	199
BstAFI	CTTAAG	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	790
BstDEI	CTNAG	5 cut(s)	38, 360, 423, 560, 677
BstDSI	CCRYGG	3 cut(s)	23, 414, 874
BstEII	GGTNACC	1 cut(s)	953
BstF5I	GGATG	7 cut(s)	262, 300, 541, 559, 586, 589, 976
BstH2I	RGCGCY	2 cut(s)	84, 465
BstHHI	GCGC	2 cut(s)	83, 464
BstKTI	GATC	2 cut(s)	451, 487
BstMAI	GTCTC	2 cut(s)	145, 556
BstMBI	GATC	2 cut(s)	448, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 78
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	797
BstPAI	GACNNNNGTC	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	953
BstSCI	CCNGG	3 cut(s)	319, 892, 1021
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	1023
BstV1I	GCAGC	4 cut(s)	56, 59, 414, 863
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
Bsu15I	ATCGAT	1 cut(s)	909
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	909
BtgI	CCRYGG	3 cut(s)	23, 414, 874
BtsCI	GGATG	7 cut(s)	262, 300, 541, 559, 586, 589, 976
BtsI	GCAGTG	2 cut(s)	286, 996
BtsIMutI	CAGTG	3 cut(s)	286, 996, 1023
CaiI	CAGNNNCTG	2 cut(s)	69, 230
CfoI	GCGC	2 cut(s)	83, 464
Cfr13I	GGNCC	3 cut(s)	871, 934, 1034
ClaI	ATCGAT	1 cut(s)	909
Csp6I	GTAC	1 cut(s)	791
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviAII	CATG	8 cut(s)	24, 415, 616, 773, 794, 950, 1039, 1051
CviQI	GTAC	1 cut(s)	791
DdeI	CTNAG	5 cut(s)	38, 360, 423, 560, 677
DpnI	GATC	2 cut(s)	450, 486
DpnII	GATC	2 cut(s)	448, 484
DrdI	GACNNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	842
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	3 cut(s)	23, 414, 654
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	556
Eco47I	GGWCC	3 cut(s)	871, 934, 1034
Eco57I	CTGAAG	1 cut(s)	453
Eco91I	GGTNACC	1 cut(s)	953
EcoO109I	RGGNCCY	1 cut(s)	934
EcoO65I	GGTNACC	1 cut(s)	953
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	3 cut(s)	23, 414, 654
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	3 cut(s)	23, 414, 654
FaeI	CATG	8 cut(s)	27, 418, 619, 776, 797, 953, 1042, 1054
FalI	AAGNNNNNCTT	4 cut(s)	438, 470, 616, 648
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	8 cut(s)	23, 414, 615, 772, 793, 949, 1038, 1050
FauI	CCCGC	2 cut(s)	691, 987
Fnu4HI	GCNGC	5 cut(s)	70, 73, 112, 428, 852
FokI	GGATG	7 cut(s)	269, 307, 548, 566, 576, 593, 983
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	5 cut(s)	70, 73, 112, 428, 852
FspBI	CTAG	2 cut(s)	146, 471
GlaI	GCGC	2 cut(s)	82, 463
GluI	GCNGC	5 cut(s)	70, 73, 112, 428, 852
GsaI	CCCAGC	1 cut(s)	942
HaeII	RGCGCY	2 cut(s)	84, 465
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	894, 1023
HhaI	GCGC	2 cut(s)	83, 464
Hin1II	CATG	8 cut(s)	27, 418, 619, 776, 797, 953, 1042, 1054
Hin6I	GCGC	2 cut(s)	81, 462
HinP1I	GCGC	2 cut(s)	81, 462
HinfI	GANTC	4 cut(s)	4, 356, 865, 1073
HpaII	CCGG	2 cut(s)	894, 1023
HphI	GGTGA	4 cut(s)	298, 343, 814, 1003
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	3 cut(s)	9, 363, 946
Hpy188III	TCNNGA	3 cut(s)	57, 146, 1070
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	345, 618, 808
HpyCH4III	ACNGT	4 cut(s)	232, 500, 715, 781
HpyCH4V	TGCA	8 cut(s)	75, 179, 395, 441, 648, 663, 763, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 78
HpyF3I	CTNAG	5 cut(s)	38, 360, 423, 560, 677
Hsp92II	CATG	8 cut(s)	27, 418, 619, 776, 797, 953, 1042, 1054
HspAI	GCGC	2 cut(s)	81, 462
Kzo9I	GATC	2 cut(s)	448, 484
LmnI	GCTCC	5 cut(s)	172, 628, 896, 946, 1059
Lsp1109I	GCAGC	4 cut(s)	56, 59, 414, 863
LweI	GCATC	1 cut(s)	1010
MaeI	CTAG	2 cut(s)	146, 471
MaeIII	GTNAC	4 cut(s)	374, 728, 844, 953
MalI	GATC	2 cut(s)	450, 486
MboI	GATC	2 cut(s)	448, 484
MboII	GAAGA	3 cut(s)	186, 446, 995
MfeI	CAATTG	2 cut(s)	117, 1044
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	2 cut(s)	169, 1023
MluCI	AATT	4 cut(s)	117, 261, 880, 1044
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	4 cut(s)	535, 718, 895, 1012
MseI	TTAA	5 cut(s)	95, 264, 408, 597, 1102
MslI	CAYNNNNRTG	5 cut(s)	22, 311, 534, 668, 1016
MspA1I	CMGCKG	1 cut(s)	427
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	2 cut(s)	894, 1023
MspR9I	CCNGG	3 cut(s)	321, 894, 1023
MunI	CAATTG	2 cut(s)	117, 1044
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	69, 78
NciI	CCSGG	2 cut(s)	894, 1023
NcoI	CCATGG	2 cut(s)	23, 414
NdeII	GATC	2 cut(s)	448, 484
NlaIII	CATG	8 cut(s)	27, 418, 619, 776, 797, 953, 1042, 1054
NlaIV	GGNNCC	7 cut(s)	168, 318, 486, 630, 770, 936, 1036
NmuCI	GTSAC	1 cut(s)	844
NspI	RCATGY	1 cut(s)	797
OliI	CACNNNNGTG	1 cut(s)	1016
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	4, 865, 1073
PkrI	GCNGC	5 cut(s)	71, 74, 113, 429, 853
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	934
PshAI	GACNNNNGTC	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	934
Psp6I	CCWGG	1 cut(s)	319
PspEI	GGTNACC	1 cut(s)	953
PspFI	CCCAGC	1 cut(s)	938
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	7 cut(s)	168, 318, 486, 630, 770, 936, 1036
PspPI	GGNCC	3 cut(s)	871, 934, 1034
PspPPI	RGGWCCY	1 cut(s)	934
PstI	CTGCAG	1 cut(s)	77
PstNI	CAGNNNCTG	2 cut(s)	69, 230
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	792
RsaNI	GTAC	1 cut(s)	791
RseI	CAYNNNNRTG	5 cut(s)	22, 311, 534, 668, 1016
SaqAI	TTAA	5 cut(s)	95, 264, 408, 597, 1102
SatI	GCNGC	5 cut(s)	70, 73, 112, 428, 852
Sau3AI	GATC	2 cut(s)	448, 484
Sau96I	GGNCC	3 cut(s)	871, 934, 1034
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	3 cut(s)	321, 894, 1023
SduI	GDGCHC	2 cut(s)	169, 1023
SfaNI	GCATC	1 cut(s)	1010
SfcI	CTRYAG	1 cut(s)	73
SinI	GGWCC	3 cut(s)	871, 934, 1034
SmiMI	CAYNNNNRTG	5 cut(s)	22, 311, 534, 668, 1016
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	4 cut(s)	117, 261, 880, 1044
SsiI	CCGC	7 cut(s)	28, 112, 254, 329, 698, 958, 994
SspMI	CTAG	2 cut(s)	146, 471
StyD4I	CCNGG	3 cut(s)	319, 892, 1021
StyI	CCWWGG	3 cut(s)	23, 414, 654
TaaI	ACNGT	4 cut(s)	232, 500, 715, 781
TaqI	TCGA	1 cut(s)	909
TasI	AATT	4 cut(s)	117, 261, 880, 1044
TatI	WGTACW	1 cut(s)	790
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	3 cut(s)	4, 865, 1073
Tru1I	TTAA	5 cut(s)	95, 264, 408, 597, 1102
Tru9I	TTAA	5 cut(s)	95, 264, 408, 597, 1102
TscAI	CASTG	3 cut(s)	286, 996, 1023
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	4 cut(s)	69, 72, 427, 851
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	4 cut(s)	273, 311, 628, 996
TspGWI	ACGGA	2 cut(s)	362, 863
TspRI	CASTG	3 cut(s)	286, 996, 1023
Vha464I	CTTAAG	1 cut(s)	94
VpaK11BI	GGWCC	3 cut(s)	871, 934, 1034
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	1 cut(s)	797
XspI	CTAG	2 cut(s)	146, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.