Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8497659.1

Orthogroup ID

OG0006558

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2304

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8497659.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 862 bp

atgcttaccatagcccatgagcagactgctgctgttattgatgggaagtctatcgcggacgatattaggtcaagaatagggagtgaggtaaggaggatgaaagagagcattggaatggtgcctgggttgggtgtaattatggttggtcagagaaaggactctgagacttatgtccggaacaagatgatggcttgtgaagaagttggaatcaaatcaaatgtggctcacctgcctgagcattgtacaaaagatcagcttcttaaagcattgtcaaagtttgatgtggatccctctgttcatggtattctcgtgcaacttcctctaccacaacatttggatgagagaaaaattatggatgtgctgagtccagagaaagatgtggatggcttccatccaattaatatgggaaatcttgccatgagaggaagggagcctatgtttattccatgcactccaaagggttgcattgagttgttgctcaggtctggcgtggaaatcgttgggaagaaagctgctgtcattggcagaagtaatattgtaggattacctacatcgttgcttttgcagaggcaccatgcaacagtcagcattgtacatgcattcacaaagaacccagaacatatcacctgtgaagctgacattgtggtcacagctgcaggagtgcctaatcttgtccgtggaaattggctaaaacctggagcagttgtcatcgacgttgggaccaatccagttgaggaccctagctgtgagcgaggttatcgcctcataggagatgtttgctatgaagaagcagtgcgggtggtgtcagccattaccccagttcctggaggagttggacccatgacaattgctatgcttctat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

287

Amino Acids

31.05

Weight (kDa)

6.55

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660 AT2G38660
fragaria_vesca	FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070 FvH4_6g09070
malus_domestica	MD04G1181400.v1.1
prunus_persica	Prupe.6G300800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459301
rosa_laevigata	RLG00000025095
rosa_multiflora	Rmu_co8497659.1_g000001 Rmu_sc0032631.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420300
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG093000 Rh3BG096100 Rh3CG097100 Rh3DG096700
rosa_wichuraiana	Rw3G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	237
AasI	GACNNNNNNGTC	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	118, 570
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccII	CGCG	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	2 cut(s)	56, 796
AclWI	GGATC	2 cut(s)	281, 294
AfaI	GTAC	2 cut(s)	244, 594
AfiI	CCNNNNNNNGG	2 cut(s)	128, 824
AjnI	CCWGG	3 cut(s)	121, 694, 823
AluBI	AGCT	5 cut(s)	256, 512, 635, 653, 744
AluI	AGCT	5 cut(s)	256, 512, 635, 653, 744
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	281, 294
AlwNI	CAGNNNCTG	1 cut(s)	824
Aor13HI	TCCGGA	1 cut(s)	174
ApeKI	GCWGC	3 cut(s)	29, 512, 653
AseI	ATTAAT	1 cut(s)	399
AspS9I	GGNCC	3 cut(s)	720, 736, 836
AsuHPI	GGTGA	2 cut(s)	218, 616
AvaII	GGWCC	3 cut(s)	720, 736, 836
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	118, 570
BauI	CACGAG	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	16, 499, 640
BccI	CCATC	4 cut(s)	35, 181, 377, 399
BciT130I	CCWGG	3 cut(s)	123, 696, 825
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	1 cut(s)	654
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	3 cut(s)	30, 513, 654
BlsI	GCNGC	3 cut(s)	31, 514, 655
Bme1390I	CCNGG	3 cut(s)	123, 696, 825
Bme18I	GGWCC	3 cut(s)	720, 736, 836
BmgT120I	GGNCC	3 cut(s)	720, 736, 836
BmiI	GGNNCC	7 cut(s)	120, 288, 432, 572, 721, 738, 838
BmrFI	CCNGG	3 cut(s)	123, 696, 825
BmrI	ACTGGG	1 cut(s)	812
BmuI	ACTGGG	1 cut(s)	812
BoxI	GACNNNNGTC	1 cut(s)	170
BpmI	CTGGAG	2 cut(s)	717, 846
Bpu10I	CCTNAGC	2 cut(s)	234, 479
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	122, 676
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	4 cut(s)	422, 452, 690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 824
Bse1I	ACTGG	2 cut(s)	728, 818
Bse8I	GATNNNNATC	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	174
BseBI	CCWGG	3 cut(s)	123, 696, 825
BseDI	CCNNGG	2 cut(s)	122, 676
BseGI	GGATG	5 cut(s)	102, 343, 361, 388, 391
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	128, 824
BseMII	CTCAG	4 cut(s)	153, 225, 353, 493
BseNI	ACTGG	2 cut(s)	728, 818
BseRI	GAGGAG	1 cut(s)	843
BseXI	GCAGC	3 cut(s)	16, 499, 640
Bsh1236I	CGCG	1 cut(s)	56
BshNI	GGYRCC	2 cut(s)	118, 570
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	2 cut(s)	128, 824
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	733
BsmI	GAATGC	1 cut(s)	599
Bsp13I	TCCGGA	1 cut(s)	174
Bsp1407I	TGTACA	2 cut(s)	242, 592
Bsp143I	GATC	2 cut(s)	250, 286
BspACI	CCGC	2 cut(s)	56, 796
BspCNI	CTCAG	4 cut(s)	154, 226, 354, 492
BspEI	TCCGGA	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	7 cut(s)	120, 288, 432, 572, 721, 738, 838
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	281, 294
BspT107I	GGYRCC	2 cut(s)	118, 570
BsrGI	TGTACA	2 cut(s)	242, 592
BsrI	ACTGG	2 cut(s)	728, 818
BssECI	CCNNGG	2 cut(s)	122, 676
BssMI	GATC	2 cut(s)	250, 286
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	3 cut(s)	123, 696, 825
Bst4CI	ACNGT	1 cut(s)	583
BstAUI	TGTACA	2 cut(s)	242, 592
BstDEI	CTNAG	4 cut(s)	162, 234, 362, 479
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	5 cut(s)	102, 343, 361, 388, 391
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	253, 289
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	250, 286
BstNI	CCWGG	3 cut(s)	123, 696, 825
BstNSI	RCATGY	1 cut(s)	599
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	121, 694, 823
BstSFI	CTRYAG	1 cut(s)	654
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	3 cut(s)	16, 499, 640
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	676
BtsCI	GGATG	5 cut(s)	102, 343, 361, 388, 391
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	720, 736, 836
Csp6I	GTAC	2 cut(s)	243, 593
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	7 cut(s)	17, 299, 418, 447, 575, 596, 841
CviQI	GTAC	2 cut(s)	243, 593
DdeI	CTNAG	4 cut(s)	162, 234, 362, 479
DpnI	GATC	2 cut(s)	252, 288
DpnII	GATC	2 cut(s)	250, 286
DrdI	GACNNNNNNGTC	1 cut(s)	644
DseDI	GACNNNNNNGTC	1 cut(s)	644
Eco47I	GGWCC	3 cut(s)	720, 736, 836
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRII	CCWGG	3 cut(s)	121, 694, 823
EcoT22I	ATGCAT	1 cut(s)	601
FaeI	CATG	7 cut(s)	20, 302, 421, 450, 578, 599, 844
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	7 cut(s)	16, 298, 417, 446, 574, 595, 840
FauI	CCCGC	1 cut(s)	789
Fnu4HI	GCNGC	3 cut(s)	30, 513, 654
FokI	GGATG	5 cut(s)	109, 350, 368, 378, 395
Fsp4HI	GCNGC	3 cut(s)	30, 513, 654
FspBI	CTAG	1 cut(s)	741
GluI	GCNGC	3 cut(s)	30, 513, 654
GsuI	CTGGAG	2 cut(s)	717, 846
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	7 cut(s)	20, 302, 421, 450, 578, 599, 844
HinfI	GANTC	3 cut(s)	158, 207, 364
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	2 cut(s)	218, 616
Hpy188I	TCNGA	2 cut(s)	150, 163
Hpy188III	TCNNGA	3 cut(s)	72, 175, 368
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	1 cut(s)	420
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	7 cut(s)	313, 450, 465, 565, 578, 599, 656
HpyF3I	CTNAG	4 cut(s)	162, 234, 362, 479
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	7 cut(s)	20, 302, 421, 450, 578, 599, 844
Kpn2I	TCCGGA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	250, 286
LmnI	GCTCC	2 cut(s)	430, 698
Lsp1109I	GCAGC	3 cut(s)	16, 499, 640
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	2 cut(s)	252, 288
MboI	GATC	2 cut(s)	250, 286
MboII	GAAGA	3 cut(s)	209, 517, 797
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	5 cut(s)	135, 348, 396, 682, 846
MlyI	GAGTC	2 cut(s)	152, 373
MmeI	TCCRAC	2 cut(s)	184, 814
Mph1103I	ATGCAT	1 cut(s)	601
MroI	TCCGGA	1 cut(s)	174
MseI	TTAA	2 cut(s)	261, 399
MslI	CAYNNNNRTG	2 cut(s)	113, 336
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	3 cut(s)	123, 696, 825
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	3 cut(s)	123, 696, 825
MvnI	CGCG	1 cut(s)	56
NdeII	GATC	2 cut(s)	250, 286
NlaIII	CATG	7 cut(s)	20, 302, 421, 450, 578, 599, 844
NlaIV	GGNNCC	7 cut(s)	120, 288, 432, 572, 721, 738, 838
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	599
PaqCI	CACCTGC	1 cut(s)	237
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	207
PflMI	CCANNNNNTGG	1 cut(s)	824
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	3 cut(s)	31, 514, 655
PleI	GAGTC	2 cut(s)	152, 372
PpsI	GAGTC	2 cut(s)	152, 372
PpuMI	RGGWCCY	1 cut(s)	736
PshAI	GACNNNNGTC	1 cut(s)	170
PshBI	ATTAAT	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	736
Psp6I	CCWGG	3 cut(s)	121, 694, 823
PspGI	CCWGG	3 cut(s)	121, 694, 823
PspN4I	GGNNCC	7 cut(s)	120, 288, 432, 572, 721, 738, 838
PspPI	GGNCC	3 cut(s)	720, 736, 836
PspPPI	RGGWCCY	1 cut(s)	736
PstI	CTGCAG	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	2 cut(s)	244, 594
RsaNI	GTAC	2 cut(s)	243, 593
RseI	CAYNNNNRTG	2 cut(s)	113, 336
SaqAI	TTAA	2 cut(s)	261, 399
SatI	GCNGC	3 cut(s)	30, 513, 654
Sau3AI	GATC	2 cut(s)	250, 286
Sau96I	GGNCC	3 cut(s)	720, 736, 836
SchI	GAGTC	2 cut(s)	152, 373
ScrFI	CCNGG	3 cut(s)	123, 696, 825
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	3 cut(s)	720, 736, 836
SmiMI	CAYNNNNRTG	2 cut(s)	113, 336
Sse9I	AATT	5 cut(s)	135, 348, 396, 682, 846
SsiI	CCGC	2 cut(s)	56, 796
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	3 cut(s)	121, 694, 823
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	1 cut(s)	711
TasI	AATT	5 cut(s)	135, 348, 396, 682, 846
TatI	WGTACW	2 cut(s)	242, 592
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	2 cut(s)	261, 399
Tru9I	TTAA	2 cut(s)	261, 399
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	3 cut(s)	29, 512, 653
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	3 cut(s)	113, 287, 798
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	798
Van91I	CCANNNNNTGG	1 cut(s)	824
VpaK11BI	GGWCC	3 cut(s)	720, 736, 836
VspI	ATTAAT	1 cut(s)	399
XceI	RCATGY	1 cut(s)	599
XspI	CTAG	1 cut(s)	741
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.