AT2G38680

Pyrimidine 5'-nucleotidase (UMPH-1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002535
Physical Location & Seq
Reverse (-)
16174001 .. 16176172
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38680.1

Sequence Viewer

Length: 1035 bp
ATGCGCGTTATCAGTTTCTGCACGCGCTTTCACGCGCCGTCGTCGATTCGTTTCTCCATCGTCTGCCATAATCACCCGCAAACACATTCTTCTTGCTACTTCCGTCACGACAATCATCAAATGGAACCGTGTGAATTATCTGCCAACACTGTGATAGCTCATCCTCGAGCTCTCACCGATAAGATGACTCTAATTCGTGACGCGGGTCCTTCCAAATTCCAGGTAATTGCAGATTTCGATGCGACTTTAACGAGATACCGAGTCAATGGACTTCGAGGAAGGCAGACCAGTCATGGCCTCTTGCAGCAAGGAGACGCATATTACGATGCTAAGAGGCAAGCCTTATATGATCACTATCATCCTCTTGAGATTTCTCCTGTGATTCCCATTGATGAGAAAACCAAACTCATGGAAGAATGGTGGGGTAAAACTCATGAGCTTCTCATTGAGGGAGGTTTGACATATGACGCAATCAAGAAATCTGTTGCGAATTCTTCCATAGCTTTTAGAGAAGGTGTGTCTGAACTTTTCGAATTTTTGGAGAAAAAGGAGATCCCTGTTCTGATTTTTTCAGCAGGACTTGCTGATGTCATTGAAGAGGTTTTGAGGCAGAACCTTGATAGAACTTTCAAGAATGTTAAGATTGTATCTAACAGGATGGTGTTCAATGATGATGGACAGCTCGTGTCTTTCAAAGGAAAGCTAATTCACGTGCTAAACAAAAACGAACACGCTTTAGACATGGCTGCTCCACTTCATGATCGACTTGGTGTTGACATTGGTGAGGAAGATGAAGAAAATGTAAACATGAAAGAGAGAAGGAATGTTTTGCTTATGGGAGATCATTTGGGGGATTTAAGGATGTCTGATGGACTGGATTATGAGACTCGGATATCTATTGGGTTTCTGAACGATAACATTGAGAAGAGTCTTGAGAGCTACCGCGAGTCATTTGATCTTGTTTATCTTAATGATGCACCTATGTGGGGAGCTCTGGAACTTGTTTCTCGGTTATTCTCAACAGAAGCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
UMPH-1

Protein Analysis

344

Amino Acids

39.3

Weight (kDa)

5.6

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMPH-1 PF05822 82 - 337 1.3e-89 Pyrimidine 5'-nucleotidase (UMPH-1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 6, 25, 35, 203, 945
AciI CCGC 3 cut(s) 77, 203, 943
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 3 cut(s) 215, 490, 533
AcvI CACGTG 1 cut(s) 712
AfiI CCNNNNNNNGG 1 cut(s) 986
AgsI TTSAA 4 cut(s) 596, 631, 667, 694
AjnI CCWGG 1 cut(s) 219
AleI CACNNNNGTG 1 cut(s) 982
AluBI AGCT 8 cut(s) 158, 170, 439, 503, 682, 703, 939, 992
AluI AGCT 8 cut(s) 158, 170, 439, 503, 682, 703, 939, 992
Alw21I GWGCWC 2 cut(s) 172, 994
Alw26I GTCTC 2 cut(s) 306, 878
AlwI GGATC 1 cut(s) 547
AlwNI CAGNNNCTG 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 304, 746
ApoI RAATTY 3 cut(s) 215, 490, 533
AspLEI GCGC 3 cut(s) 6, 27, 37
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 65, 166, 794
AsuII TTCGAA 1 cut(s) 531
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 206
BanII GRGCYC 2 cut(s) 172, 994
BauI CACGAG 1 cut(s) 683
BbrPI CACGTG 1 cut(s) 712
Bbv12I GWGCWC 2 cut(s) 172, 994
BbvI GCAGC 2 cut(s) 316, 733
BccI CCATC 4 cut(s) 65, 652, 668, 863
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 306, 878
BisI GCNGC 2 cut(s) 305, 747
BlsI GCNGC 2 cut(s) 306, 748
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 126, 207
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 3 cut(s) 229, 316, 964
BoxI GACNNNNGTC 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 386, 953
BsaAI YACGTR 1 cut(s) 712
BsaBI GATNNNNATC 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 986
Bse1I ACTGG 2 cut(s) 288, 879
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 221
BseGI GGATG 4 cut(s) 160, 358, 663, 867
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 986
BseNI ACTGG 2 cut(s) 288, 879
BseXI GCAGC 2 cut(s) 316, 733
BsgI GTGCAG 1 cut(s) 4
Bsh1236I CGCG 5 cut(s) 6, 25, 35, 203, 945
BshFI GGCC 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 172, 994
BsiHKCI CYCGRG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 986
BsmAI GTCTC 2 cut(s) 306, 878
BsmBI CGTCTC 1 cut(s) 306
BsnI GGCC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 2 cut(s) 172, 994
Bsp143I GATC 5 cut(s) 349, 552, 760, 841, 955
BspACI CCGC 3 cut(s) 77, 203, 943
BspANI GGCC 1 cut(s) 297
BspFNI CGCG 5 cut(s) 6, 25, 35, 203, 945
BspHI TCATGA 2 cut(s) 433, 757
BspLI GGNNCC 2 cut(s) 126, 207
BspPI GGATC 1 cut(s) 547
BspT104I TTCGAA 1 cut(s) 531
BsrI ACTGG 2 cut(s) 288, 879
BssMI GATC 5 cut(s) 349, 552, 760, 841, 955
BssSI CACGAG 1 cut(s) 683
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 129, 151
Bst6I CTCTTC 2 cut(s) 591, 920
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 712
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 23, 339
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 4 cut(s) 160, 358, 663, 867
BstFNI CGCG 5 cut(s) 6, 25, 35, 203, 945
BstHHI GCGC 3 cut(s) 6, 27, 37
BstKTI GATC 5 cut(s) 352, 555, 763, 844, 958
BstMAI GTCTC 2 cut(s) 306, 878
BstMBI GATC 5 cut(s) 349, 552, 760, 841, 955
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 221
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 219
BstUI CGCG 5 cut(s) 6, 25, 35, 203, 945
BstV1I GCAGC 2 cut(s) 316, 733
BstX2I RGATCY 1 cut(s) 552
BstXI CCANNNNNNTGG 1 cut(s) 409
BstYI RGATCY 1 cut(s) 552
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 4 cut(s) 160, 358, 663, 867
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 23, 339
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 2 cut(s) 433, 757
CfoI GCGC 3 cut(s) 6, 27, 37
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 3 cut(s) 209, 323, 476
CviAII CATG 6 cut(s) 293, 409, 434, 742, 758, 808
DdeI CTNAG 1 cut(s) 330
DpnI GATC 5 cut(s) 351, 554, 762, 843, 957
DpnII GATC 5 cut(s) 349, 552, 760, 841, 955
Eam1104I CTCTTC 2 cut(s) 591, 920
EarI CTCTTC 2 cut(s) 591, 920
Ecl136II GAGCTC 2 cut(s) 170, 992
Eco24I GRGCYC 2 cut(s) 172, 994
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 206
Eco53kI GAGCTC 2 cut(s) 170, 992
Eco72I CACGTG 1 cut(s) 712
Eco88I CYCGRG 1 cut(s) 165
EcoICRI GAGCTC 2 cut(s) 170, 992
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 894
EcoT38I GRGCYC 2 cut(s) 172, 994
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 6 cut(s) 296, 412, 437, 745, 761, 811
FatI CATG 6 cut(s) 292, 408, 433, 741, 757, 807
FauI CCCGC 2 cut(s) 84, 196
FauNDI CATATG 1 cut(s) 463
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 305, 747
FokI GGATG 4 cut(s) 147, 345, 670, 874
FriOI GRGCYC 2 cut(s) 172, 994
Fsp4HI GCNGC 2 cut(s) 305, 747
GlaI GCGC 3 cut(s) 5, 26, 36
GluI GCNGC 2 cut(s) 305, 747
HaeIII GGCC 1 cut(s) 297
HgaI GACGC 3 cut(s) 209, 323, 476
HhaI GCGC 3 cut(s) 6, 27, 37
Hin1II CATG 6 cut(s) 296, 412, 437, 745, 761, 811
Hin6I GCGC 3 cut(s) 4, 25, 35
HinP1I GCGC 3 cut(s) 4, 25, 35
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 7 cut(s) 46, 187, 261, 382, 886, 928, 947
HphI GGTGA 3 cut(s) 65, 166, 794
Hpy166II GTNNAC 2 cut(s) 775, 805
Hpy188I TCNGA 5 cut(s) 523, 564, 868, 891, 909
Hpy188III TCNNGA 9 cut(s) 107, 197, 365, 434, 475, 631, 758, 932, 995
Hpy8I GTNNAC 2 cut(s) 775, 805
Hpy99I CGWCG 2 cut(s) 43, 46
HpyAV CCTTC 4 cut(s) 219, 273, 506, 813
HpyCH4III ACNGT 2 cut(s) 129, 151
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 4 cut(s) 21, 230, 304, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 6 cut(s) 296, 412, 437, 745, 761, 811
HspAI GCGC 3 cut(s) 4, 25, 35
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 5 cut(s) 349, 552, 760, 841, 955
LmnI GCTCC 2 cut(s) 754, 989
LpnPI CCDG 9 cut(s) 206, 233, 301, 390, 561, 570, 640, 860, 980
Lsp1109I GCAGC 2 cut(s) 316, 733
LweI GCATC 3 cut(s) 229, 316, 964
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 2 cut(s) 104, 197
MalI GATC 5 cut(s) 351, 554, 762, 843, 957
MboI GATC 5 cut(s) 349, 552, 760, 841, 955
MboII GAAGA 7 cut(s) 81, 425, 486, 608, 800, 806, 937
MflI RGATCY 1 cut(s) 552
MhlI GDGCHC 2 cut(s) 172, 994
MluCI AATT 7 cut(s) 134, 192, 215, 225, 490, 533, 705
MlyI GAGTC 5 cut(s) 181, 270, 880, 937, 956
MseI TTAA 4 cut(s) 248, 639, 857, 969
MslI CAYNNNNRTG 1 cut(s) 982
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 5 cut(s) 6, 25, 35, 203, 945
MwoI GCNNNNNNNGC 1 cut(s) 581
NdeI CATATG 1 cut(s) 463
NdeII GATC 5 cut(s) 349, 552, 760, 841, 955
NlaIII CATG 6 cut(s) 296, 412, 437, 745, 761, 811
NlaIV GGNNCC 2 cut(s) 126, 207
NmuCI GTSAC 2 cut(s) 104, 197
NspV TTCGAA 1 cut(s) 531
OliI CACNNNNGTG 1 cut(s) 982
PaeR7I CTCGAG 1 cut(s) 165
PagI TCATGA 2 cut(s) 433, 757
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 2 cut(s) 46, 382
PkrI GCNGC 2 cut(s) 306, 748
PleI GAGTC 5 cut(s) 181, 269, 880, 936, 955
PmaCI CACGTG 1 cut(s) 712
PmlI CACGTG 1 cut(s) 712
PpsI GAGTC 5 cut(s) 181, 269, 880, 936, 955
Ppu21I YACGTR 1 cut(s) 712
PpuMI RGGWCCY 1 cut(s) 206
PshAI GACNNNNGTC 1 cut(s) 204
Psp124BI GAGCTC 2 cut(s) 172, 994
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 219
PspCI CACGTG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 126, 207
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PspXI VCTCGAGB 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 552
RseI CAYNNNNRTG 1 cut(s) 982
SacI GAGCTC 2 cut(s) 172, 994
SaqAI TTAA 4 cut(s) 248, 639, 857, 969
SatI GCNGC 2 cut(s) 305, 747
Sau3AI GATC 5 cut(s) 349, 552, 760, 841, 955
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 5 cut(s) 181, 270, 880, 937, 956
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 2 cut(s) 172, 994
SfaNI GCATC 3 cut(s) 229, 316, 964
Sfr274I CTCGAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 982
SmlI CTYRAG 3 cut(s) 165, 365, 932
SmoI CTYRAG 3 cut(s) 165, 365, 932
Sse9I AATT 7 cut(s) 134, 192, 215, 225, 490, 533, 705
SsiI CCGC 3 cut(s) 77, 203, 943
SstI GAGCTC 2 cut(s) 172, 994
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 129, 151
TaiI ACGT 1 cut(s) 714
TaqI TCGA 6 cut(s) 44, 166, 237, 274, 531, 763
TasI AATT 7 cut(s) 134, 192, 215, 225, 490, 533, 705
TfiI GAWTC 2 cut(s) 46, 382
Tru1I TTAA 4 cut(s) 248, 639, 857, 969
Tru9I TTAA 4 cut(s) 248, 639, 857, 969
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 2 cut(s) 104, 197
TseI GCWGC 2 cut(s) 304, 746
Tsp45I GTSAC 2 cut(s) 104, 197
TspDTI ATGAA 3 cut(s) 746, 807, 824
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 3 cut(s) 215, 490, 533
XhoI CTCGAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.