Rorug01G0098400

5'-nucleotidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002535
Physical Location & Seq
Reverse (-)
16288139 .. 16289520
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0098400.1

Sequence Viewer

Length: 1311 bp
ATGTCCCCCAAAAAATGTCTCAACTTAGCCAAAGCCAGCGATGGCGAAGAAAGAAGGCATCGTCTGGTTCGGCATTACTGCCCTCTTCAGAAGCATAAGAAGCACAGGTGTGATGGATGCGTGATGAAGAAGGAGAAGAAGAAGAAAATAAGAGTATCAGAGAAGGTGAAGAAGACAACGAAGAAGTTGAAGCTGGAGGAGGAGGAGGCTAAGAAGTCACTCTACATATGTTTCGTTGAACAACGCGAGGGTGGGAGCGTCGCTATTGTTGTTCGTACCATCAAATTATCCGACTTGTTATCCTCCGACGATGAAGAATTGCAATTGCGGCAAGTGGCTTATAAGGCCGGGGAAGATGTTCCCGATTTTGTTGGTTGTGCTGTTTTCGGCTCCCAAATCATTTTCGCCGGTGGCGTGAGCCCCAGCTTGGGTTCCGGTCACAGATTTCCGCCATTAAGTTCTGAACTCTGGAATAGAGATGTTCATGCCTTCGAGGTTCATGACAATGTTTTCAGGAAGATGGATGCGACTTTACAGACAGGGAAATTTTTCCCTATGATGGTGGAGCTGGGCGGGAAAGTGTACGCTCTTTCCTATAAGCTGATCGCTGAGCCTCCATCATTCGAGGTATTTGACCCTAAAATAGGCCTGTGGAAGGGTTTGCCCCAACCTCCATTTTTCCAACCCAGATCTCCATATGACTCTCATACTTCCTTCTTTTATGCAATTGCCGGCACCAAGATGTTTGTGTCCCATGACAAATGTCCGGTGTTCTGCTTTGACGTGGCACACCCAGACAGAGAATGGAGACTAGTCCCTACTATGTGTGGCGGCGGCCCTTTTCCTTTTATGGGCAACGCTTTTGTCCTGGACCTGCCGGAGCACCATGATGACAAGAAGAAGATCATGTTTGCTTATATTCATGATACGTGGCGGCTGGGAGTTTATCTTTTTTCCTTGGAGGAAGGTCAGGAATCCATTGCACCGATTGGTTATTTGAAACTGCCATGGTGGCCTTATGAATTGGGTTCGGCAGCAGGCTGTCATTTTGTCCACATAGGAGGTCAGAAAGCCTGCATTCTTATCACCCAATTCAACCTTCCTTATGGTGAAGGACCTGACTATAAGCCCGGGACTCATAAGAAGCGGGGCTTTGCGATACCATTTCAATTTCAAGTTGATATCACTAAGGTGGACAGGGACGAGAAGAATTGTTTCACTCTCCAATTCATGACTCCTCGCACCTTCGAATTCCAGACCAACCCATCCACTTTTCCTCTACCTTTTACGGTTGGTTGCTTTCTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
UMPH-1

Protein Analysis

436

Amino Acids

49.65

Weight (kDa)

8.79

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 178 - 288 9.2e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 882
AccB1I GGYRCC 1 cut(s) 734
AccII CGCG 1 cut(s) 246
AciI CCGC 7 cut(s) 328, 449, 573, 831, 834, 934, 1147
AcsI RAATTY 2 cut(s) 545, 1250
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 277, 584
AfiI CCNNNNNNNGG 6 cut(s) 427, 428, 559, 644, 655, 851
AgsI TTSAA 6 cut(s) 190, 239, 1000, 1096, 1169, 1175
AhlI ACTAGT 1 cut(s) 811
AjiI CACGTC 1 cut(s) 784
AjnI CCWGG 1 cut(s) 867
AjuI GAANNNNNNNTTGG 2 cut(s) 1083, 1115
AleI CACNNNNGTG 2 cut(s) 108, 1190
AluBI AGCT 4 cut(s) 193, 426, 568, 601
AluI AGCT 4 cut(s) 193, 426, 568, 601
Alw21I GWGCWC 1 cut(s) 885
Alw26I GTCTC 2 cut(s) 23, 802
Ama87I CYCGRG 1 cut(s) 1130
AoxI GGCC 4 cut(s) 345, 646, 835, 1013
ApeKI GCWGC 1 cut(s) 1034
ApoI RAATTY 2 cut(s) 545, 1250
Asp700I GAANNNNTTC 3 cut(s) 357, 548, 1214
AspS9I GGNCC 3 cut(s) 836, 871, 1115
AsuC2I CCSGG 3 cut(s) 349, 1131, 1132
AsuHPI GGTGA 3 cut(s) 178, 1078, 1121
AsuII TTCGAA 1 cut(s) 1248
AvaI CYCGRG 1 cut(s) 1130
AvaII GGWCC 2 cut(s) 871, 1115
BanI GGYRCC 1 cut(s) 734
BanII GRGCYC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 885
BbvI GCAGC 1 cut(s) 1046
BccI CCATC 7 cut(s) 35, 107, 287, 514, 553, 625, 1273
BciT130I CCWGG 1 cut(s) 869
BcnI CCSGG 3 cut(s) 349, 1131, 1132
BcoDI GTCTC 2 cut(s) 23, 802
BcuI ACTAGT 1 cut(s) 811
BfaI CTAG 1 cut(s) 812
BfuAI ACCTGC 1 cut(s) 882
BglI GCCNNNNNGGC 1 cut(s) 1012
BglII AGATCT 1 cut(s) 689
BisI GCNGC 5 cut(s) 329, 832, 835, 935, 1035
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 5 cut(s) 330, 833, 836, 936, 1036
Bme1390I CCNGG 4 cut(s) 349, 869, 1131, 1132
Bme18I GGWCC 2 cut(s) 871, 1115
BmeT110I CYCGRG 1 cut(s) 1130
BmgBI CACGTC 1 cut(s) 784
BmgT120I GGNCC 3 cut(s) 836, 871, 1115
BmiI GGNNCC 3 cut(s) 391, 433, 736
BmrFI CCNGG 4 cut(s) 349, 869, 1131, 1132
BmsI GCATC 3 cut(s) 67, 107, 514
BoxI GACNNNNGTC 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 1248
BpuMI CCSGG 3 cut(s) 349, 1131, 1132
BsaAI YACGTR 1 cut(s) 930
BsaJI CCNNGG 4 cut(s) 348, 957, 1007, 1130
BsaWI WCCGGW 2 cut(s) 434, 766
Bsc4I CCNNNNNNNGG 6 cut(s) 427, 428, 559, 644, 655, 851
Bse118I RCCGGY 2 cut(s) 407, 731
Bse3DI GCAATG 1 cut(s) 978
BseBI CCWGG 1 cut(s) 869
BseDI CCNNGG 4 cut(s) 348, 957, 1007, 1130
BseGI GGATG 3 cut(s) 122, 529, 1265
BseLI CCNNNNNNNGG 6 cut(s) 427, 428, 559, 644, 655, 851
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 1 cut(s) 600
BseRI GAGGAG 4 cut(s) 212, 215, 218, 1227
BseXI GCAGC 1 cut(s) 1046
BseYI CCCAGC 3 cut(s) 422, 568, 937
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 347, 648, 837, 1015
BshNI GGYRCC 1 cut(s) 734
BsiHKAI GWGCWC 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 1130
BsiSI CCGG 7 cut(s) 348, 408, 435, 732, 767, 878, 1131
BslFI GGGAC 4 cut(s) 736, 800, 1147, 1214
BslI CCNNNNNNNGG 6 cut(s) 427, 428, 559, 644, 655, 851
BsmAI GTCTC 2 cut(s) 23, 802
BsmFI GGGAC 4 cut(s) 736, 800, 1147, 1214
BsmI GAATGC 1 cut(s) 1077
BsnI GGCC 4 cut(s) 347, 648, 837, 1015
BsoBI CYCGRG 1 cut(s) 1130
Bsp119I TTCGAA 1 cut(s) 1248
Bsp1286I GDGCHC 2 cut(s) 422, 885
Bsp143I GATC 3 cut(s) 603, 689, 903
Bsp1720I GCTNAGC 1 cut(s) 609
Bsp19I CCATGG 1 cut(s) 1007
BspACI CCGC 7 cut(s) 328, 449, 573, 831, 834, 934, 1147
BspANI GGCC 4 cut(s) 347, 648, 837, 1015
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 3 cut(s) 499, 922, 1230
BspLI GGNNCC 3 cut(s) 391, 433, 736
BspMI ACCTGC 1 cut(s) 882
BspT104I TTCGAA 1 cut(s) 1248
BspT107I GGYRCC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 978
BsrFI RCCGGY 2 cut(s) 407, 731
BssAI RCCGGY 2 cut(s) 407, 731
BssECI CCNNGG 4 cut(s) 348, 957, 1007, 1130
BssMI GATC 3 cut(s) 603, 689, 903
BssT1I CCWWGG 2 cut(s) 957, 1007
Bst2UI CCWGG 1 cut(s) 869
Bst4CI ACNGT 1 cut(s) 1291
Bst6I CTCTTC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 930
BstBI TTCGAA 1 cut(s) 1248
BstC8I GCNNGC 4 cut(s) 37, 733, 1039, 1075
BstDEI CTNAG 4 cut(s) 25, 210, 609, 1188
BstDSI CCRYGG 1 cut(s) 1007
BstENI CCTNNNNNAGG 2 cut(s) 642, 653
BstF5I GGATG 3 cut(s) 122, 529, 1265
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 3 cut(s) 606, 692, 906
BstMAI GTCTC 2 cut(s) 23, 802
BstMBI GATC 3 cut(s) 603, 689, 903
BstMWI GCNNNNNNNGC 4 cut(s) 100, 328, 344, 1012
BstNI CCWGG 1 cut(s) 869
BstPAI GACNNNNGTC 1 cut(s) 762
BstSCI CCNGG 4 cut(s) 347, 867, 1129, 1130
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 1046
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 689
BstYI RGATCY 1 cut(s) 689
BsuRI GGCC 4 cut(s) 347, 648, 837, 1015
BtgI CCRYGG 1 cut(s) 1007
BtgZI GCGATG 1 cut(s) 54
BtrI CACGTC 1 cut(s) 784
BtsCI GGATG 3 cut(s) 122, 529, 1265
BveI ACCTGC 1 cut(s) 882
Cac8I GCNNGC 4 cut(s) 37, 733, 1039, 1075
CciI TCATGA 3 cut(s) 499, 922, 1230
Cfr10I RCCGGY 2 cut(s) 407, 731
Cfr13I GGNCC 3 cut(s) 836, 871, 1115
Cfr9I CCCGGG 1 cut(s) 1130
CseI GACGC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 276, 583
CviAII CATG 8 cut(s) 485, 500, 755, 887, 907, 923, 1008, 1231
CviQI GTAC 2 cut(s) 276, 583
DdeI CTNAG 4 cut(s) 25, 210, 609, 1188
DpnI GATC 3 cut(s) 605, 691, 905
DpnII GATC 3 cut(s) 603, 689, 903
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 957, 1007
Eco147I AGGCCT 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 1183
Eco47I GGWCC 2 cut(s) 871, 1115
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 1130
EcoNI CCTNNNNNAGG 2 cut(s) 642, 653
EcoO109I RGGNCCY 1 cut(s) 1115
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 1 cut(s) 867
EcoRV GATATC 1 cut(s) 1183
EcoT14I CCWWGG 2 cut(s) 957, 1007
EcoT38I GRGCYC 1 cut(s) 422
ErhI CCWWGG 2 cut(s) 957, 1007
FaeI CATG 8 cut(s) 488, 503, 758, 890, 910, 926, 1011, 1234
FalI AAGNNNNNCTT 2 cut(s) 1136, 1168
FaqI GGGAC 4 cut(s) 736, 800, 1147, 1214
FatI CATG 8 cut(s) 484, 499, 754, 886, 906, 922, 1007, 1230
FauI CCCGC 2 cut(s) 566, 1140
FauNDI CATATG 2 cut(s) 227, 697
Fnu4HI GCNGC 5 cut(s) 329, 832, 835, 935, 1035
FokI GGATG 3 cut(s) 129, 536, 1252
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 5 cut(s) 329, 832, 835, 935, 1035
FspBI CTAG 1 cut(s) 812
GluI GCNGC 5 cut(s) 329, 832, 835, 935, 1035
GsaI CCCAGC 3 cut(s) 426, 572, 941
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 4 cut(s) 347, 648, 837, 1015
HapII CCGG 7 cut(s) 348, 408, 435, 732, 767, 878, 1131
HgaI GACGC 1 cut(s) 247
Hin1II CATG 8 cut(s) 488, 503, 758, 890, 910, 926, 1011, 1234
HinfI GANTC 4 cut(s) 701, 974, 1135, 1234
HpaII CCGG 7 cut(s) 348, 408, 435, 732, 767, 878, 1131
HphI GGTGA 3 cut(s) 178, 1078, 1121
Hpy166II GTNNAC 3 cut(s) 583, 1054, 1195
Hpy188I TCNGA 6 cut(s) 90, 160, 292, 307, 463, 1068
Hpy188III TCNNGA 8 cut(s) 362, 469, 500, 514, 923, 971, 1231, 1255
Hpy8I GTNNAC 3 cut(s) 583, 1054, 1195
Hpy99I CGWCG 2 cut(s) 263, 311
HpyCH4III ACNGT 1 cut(s) 1291
HpyCH4IV ACGT 2 cut(s) 783, 929
HpyCH4V TGCA 4 cut(s) 322, 725, 983, 1077
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 328, 344, 1012
HpyF3I CTNAG 4 cut(s) 25, 210, 609, 1188
HpySE526I ACGT 2 cut(s) 783, 929
Hsp92II CATG 8 cut(s) 488, 503, 758, 890, 910, 926, 1011, 1234
KroI GCCGGC 1 cut(s) 731
KroNI GCCGGC 1 cut(s) 733
Kzo9I GATC 3 cut(s) 603, 689, 903
LmnI GCTCC 4 cut(s) 255, 395, 565, 880
Lsp1109I GCAGC 1 cut(s) 1046
LweI GCATC 3 cut(s) 67, 107, 514
MaeI CTAG 1 cut(s) 812
MaeII ACGT 2 cut(s) 783, 929
MaeIII GTNAC 2 cut(s) 216, 437
MalI GATC 3 cut(s) 605, 691, 905
MboI GATC 3 cut(s) 603, 689, 903
MfeI CAATTG 2 cut(s) 323, 726
MflI RGATCY 1 cut(s) 689
MhlI GDGCHC 2 cut(s) 422, 885
MlyI GAGTC 3 cut(s) 695, 1129, 1228
MmeI TCCRAC 3 cut(s) 315, 330, 706
MroNI GCCGGC 1 cut(s) 731
MroXI GAANNNNTTC 3 cut(s) 357, 548, 1214
MseI TTAA 1 cut(s) 455
MslI CAYNNNNRTG 5 cut(s) 108, 504, 740, 888, 1190
MspI CCGG 7 cut(s) 348, 408, 435, 732, 767, 878, 1131
MspR9I CCNGG 4 cut(s) 349, 869, 1131, 1132
MunI CAATTG 2 cut(s) 323, 726
Mva1269I GAATGC 1 cut(s) 1077
MvaI CCWGG 1 cut(s) 869
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 4 cut(s) 100, 328, 344, 1012
NaeI GCCGGC 1 cut(s) 733
NciI CCSGG 3 cut(s) 349, 1131, 1132
NcoI CCATGG 1 cut(s) 1007
NdeI CATATG 2 cut(s) 227, 697
NdeII GATC 3 cut(s) 603, 689, 903
NgoMIV GCCGGC 1 cut(s) 731
NlaIII CATG 8 cut(s) 488, 503, 758, 890, 910, 926, 1011, 1234
NlaIV GGNNCC 3 cut(s) 391, 433, 736
NmuCI GTSAC 2 cut(s) 216, 437
NspV TTCGAA 1 cut(s) 1248
OliI CACNNNNGTG 2 cut(s) 108, 1190
PagI TCATGA 3 cut(s) 499, 922, 1230
PceI AGGCCT 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 1 cut(s) 1077
PdiI GCCGGC 1 cut(s) 733
PdmI GAANNNNTTC 3 cut(s) 357, 548, 1214
PfeI GAWTC 1 cut(s) 974
PfoI TCCNGGA 1 cut(s) 867
PkrI GCNGC 5 cut(s) 330, 833, 836, 936, 1036
PleI GAGTC 3 cut(s) 695, 1129, 1228
PpsI GAGTC 3 cut(s) 695, 1129, 1228
Ppu21I YACGTR 1 cut(s) 930
PpuMI RGGWCCY 1 cut(s) 1115
PshAI GACNNNNGTC 1 cut(s) 762
PsiI TTATAA 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 1115
Psp6I CCWGG 1 cut(s) 867
PspFI CCCAGC 3 cut(s) 422, 568, 937
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 3 cut(s) 391, 433, 736
PspPI GGNCC 3 cut(s) 836, 871, 1115
PspPPI RGGWCCY 1 cut(s) 1115
PsuI RGATCY 1 cut(s) 689
RsaI GTAC 2 cut(s) 277, 584
RsaNI GTAC 2 cut(s) 276, 583
RseI CAYNNNNRTG 5 cut(s) 108, 504, 740, 888, 1190
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 5 cut(s) 329, 832, 835, 935, 1035
Sau3AI GATC 3 cut(s) 603, 689, 903
Sau96I GGNCC 3 cut(s) 836, 871, 1115
SchI GAGTC 3 cut(s) 695, 1129, 1228
ScrFI CCNGG 4 cut(s) 349, 869, 1131, 1132
SduI GDGCHC 2 cut(s) 422, 885
SfaNI GCATC 3 cut(s) 67, 107, 514
SfuI TTCGAA 1 cut(s) 1248
SgrAI CRCCGGYG 1 cut(s) 407
SinI GGWCC 2 cut(s) 871, 1115
SmaI CCCGGG 1 cut(s) 1132
SmiMI CAYNNNNRTG 5 cut(s) 108, 504, 740, 888, 1190
SpeI ACTAGT 1 cut(s) 811
SseBI AGGCCT 1 cut(s) 648
SsiI CCGC 7 cut(s) 328, 449, 573, 831, 834, 934, 1147
SspMI CTAG 1 cut(s) 812
StuI AGGCCT 1 cut(s) 648
StyD4I CCNGG 4 cut(s) 347, 867, 1129, 1130
StyI CCWWGG 2 cut(s) 957, 1007
TaaI ACNGT 1 cut(s) 1291
TaiI ACGT 2 cut(s) 786, 932
TaqI TCGA 3 cut(s) 492, 624, 1248
TauI GCSGC 4 cut(s) 331, 834, 837, 937
TfiI GAWTC 1 cut(s) 974
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TseFI GTSAC 2 cut(s) 216, 437
TseI GCWGC 1 cut(s) 1034
Tsp45I GTSAC 2 cut(s) 216, 437
TspDTI ATGAA 7 cut(s) 140, 327, 473, 488, 911, 1035, 1219
TspMI CCCGGG 1 cut(s) 1130
VpaK11BI GGWCC 2 cut(s) 871, 1115
XagI CCTNNNNNAGG 2 cut(s) 642, 653
XapI RAATTY 2 cut(s) 545, 1250
XcmI CCANNNNNNNNNTGG 1 cut(s) 801
XmaI CCCGGG 1 cut(s) 1130
XmnI GAANNNNTTC 3 cut(s) 357, 548, 1214
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.