Rh1DG128000

5'-nucleotidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002535
Physical Location & Seq
Forward (+)
26690273 .. 26695865
5593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG128000.1

Sequence Viewer

Length: 738 bp
ATGGTTCTCGGGGACAAAGAGAATCCTGAATATAATAACAAAAGGCGGGAGCTATTCGAATACTATCATCCATTAGAGTTCTCGCCAGCTATTCCAATTGAACAAAAAACTAAGCTTATGGAAGAATGGTGGGGAAAGACTCATTCTCTTTTGATTGAGGGAGGCCTTACCTATGATGGGATAAGGCAATCCGTTGCTGATTCCACAATTGCTTTTAGGGAGGGTGTTGTTGAATTATTTGAGTTTTTAGAGAAAAGAGACATTCCTGTTCTTATATTTTCAGCAGGACTTGCAGATATCATAGAGGAGGTCCTGAGGCAGAAAGTTCACAGATTGTTTAAAAATGTGAAGATCGTCTCCAATAGGATGGTATTTGATGATAACAGCCACCTTGTATCGTTTAAAGGGAAGACGATTCATAGTCTAAATAAAAATGAGCACGCTCTTGATATGGCTGCTCCACTTCATGAGCAATTAGGTGATTTAGATGGGCCAACTTATGAGAATGCGTCAGTCAAGACAAGAAGAAATGTCATTCTTCTGGGCGATCATATTGGTGACCTGGGAATGTCTGATGGTTTGAACTATGAGAATAGAATTTCCGTGGGATTTCTGAATGACAATGTTGAGAATTCTATTGATAGCTACCGCGAAGCCTTTGACGTCGTTTACCTGAATGATGCACCCATGTGGGGAGTAGTAAAGCTTGTTTCACAACTATGTCCTGGAGGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
UMPH-1

Protein Analysis

245

Amino Acids

27.84

Weight (kDa)

5.07

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMPH-1 PF05822 7 - 240 1.1e-84 Pyrimidine 5'-nucleotidase (UMPH-1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 666
AccII CGCG 1 cut(s) 651
AciI CCGC 2 cut(s) 46, 649
AcsI RAATTY 2 cut(s) 597, 631
AcyI GRCGYC 1 cut(s) 663
AfiI CCNNNNNNNGG 2 cut(s) 177, 692
AgsI TTSAA 3 cut(s) 101, 233, 583
AjnI CCWGG 2 cut(s) 561, 724
AleI CACNNNNGTG 1 cut(s) 688
AluBI AGCT 5 cut(s) 52, 89, 115, 645, 706
AluI AGCT 5 cut(s) 52, 89, 115, 645, 706
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 252, 361
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 2 cut(s) 163, 491
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 2 cut(s) 597, 631
AspS9I GGNCC 2 cut(s) 310, 491
AsuHPI GGTGA 2 cut(s) 491, 569
AsuII TTCGAA 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 310
AxyI CCTNAGG 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 442
BccI CCATC 4 cut(s) 170, 361, 482, 569
BciT130I CCWGG 2 cut(s) 563, 726
BcoDI GTCTC 2 cut(s) 252, 361
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 563, 726
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 310, 491
BmrFI CCNGG 2 cut(s) 563, 726
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 562, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 692
Bse21I CCTNAGG 1 cut(s) 314
BseBI CCWGG 2 cut(s) 563, 726
BseDI CCNNGG 2 cut(s) 562, 603
BseGI GGATG 2 cut(s) 67, 372
BseLI CCNNNNNNNGG 2 cut(s) 177, 692
BseMII CTCAG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 442
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 2 cut(s) 165, 493
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 177, 692
BsmAI GTCTC 2 cut(s) 252, 361
BsmBI CGTCTC 1 cut(s) 361
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 2 cut(s) 165, 493
BsoBI CYCGRG 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 351, 547
BspACI CCGC 2 cut(s) 46, 649
BspANI GGCC 2 cut(s) 165, 493
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 1 cut(s) 466
BspT104I TTCGAA 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 562, 603
BssMI GATC 2 cut(s) 351, 547
BssNI GRCGYC 1 cut(s) 663
Bst2UI CCWGG 2 cut(s) 563, 726
BstACI GRCGYC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 87, 441
BstDEI CTNAG 2 cut(s) 111, 314
BstDSI CCRYGG 1 cut(s) 603
BstEII GGTNACC 1 cut(s) 557
BstF5I GGATG 2 cut(s) 67, 372
BstFNI CGCG 1 cut(s) 651
BstKTI GATC 2 cut(s) 354, 550
BstMAI GTCTC 2 cut(s) 252, 361
BstMBI GATC 2 cut(s) 351, 547
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 2 cut(s) 563, 726
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 2 cut(s) 561, 724
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 416
BstXI CCANNNNNNTGG 1 cut(s) 367
Bsu36I CCTNAGG 1 cut(s) 314
BsuRI GGCC 2 cut(s) 165, 493
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 2 cut(s) 67, 372
Cac8I GCNNGC 2 cut(s) 87, 441
CciI TCATGA 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 310, 491
CseI GACGC 1 cut(s) 498
CviAII CATG 2 cut(s) 467, 688
DdeI CTNAG 2 cut(s) 111, 314
DpnI GATC 2 cut(s) 353, 549
DpnII GATC 2 cut(s) 351, 547
DraI TTTAAA 2 cut(s) 340, 403
Eco147I AGGCCT 1 cut(s) 165
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 310
Eco81I CCTNAGG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 8
Eco91I GGTNACC 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 310
EcoO65I GGTNACC 1 cut(s) 557
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 2 cut(s) 561, 724
EcoRV GATATC 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 2 cut(s) 470, 691
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 466, 687
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 2 cut(s) 54, 379
Fsp4HI GCNGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 456
HaeIII GGCC 2 cut(s) 165, 493
HgaI GACGC 1 cut(s) 498
Hin1I GRCGYC 1 cut(s) 663
Hin1II CATG 2 cut(s) 470, 691
HindIII AAGCTT 2 cut(s) 113, 704
HinfI GANTC 4 cut(s) 22, 139, 200, 415
HphI GGTGA 2 cut(s) 491, 569
Hpy166II GTNNAC 2 cut(s) 328, 670
Hpy188I TCNGA 2 cut(s) 574, 615
Hpy188III TCNNGA 5 cut(s) 26, 313, 446, 467, 517
Hpy8I GTNNAC 2 cut(s) 328, 670
Hpy99I CGWCG 1 cut(s) 668
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 2 cut(s) 293, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 111, 314
HpySE526I ACGT 1 cut(s) 663
Hsp92I GRCGYC 1 cut(s) 663
Hsp92II CATG 2 cut(s) 470, 691
Kzo9I GATC 2 cut(s) 351, 547
LmnI GCTCC 2 cut(s) 49, 463
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 1 cut(s) 670
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 1 cut(s) 557
MalI GATC 2 cut(s) 353, 549
MboI GATC 2 cut(s) 351, 547
MboII GAAGA 5 cut(s) 134, 361, 421, 530, 537
MfeI CAATTG 2 cut(s) 96, 207
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 6 cut(s) 96, 207, 233, 473, 597, 631
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 7 cut(s) 151, 155, 214, 298, 301, 309, 722
MseI TTAA 2 cut(s) 339, 402
MslI CAYNNNNRTG 3 cut(s) 555, 688, 718
MspR9I CCNGG 2 cut(s) 563, 726
MunI CAATTG 2 cut(s) 96, 207
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 2 cut(s) 563, 726
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 2 cut(s) 351, 547
NlaIII CATG 2 cut(s) 470, 691
NmuCI GTSAC 1 cut(s) 557
NspV TTCGAA 1 cut(s) 57
OliI CACNNNNGTG 1 cut(s) 688
PagI TCATGA 1 cut(s) 466
PceI AGGCCT 1 cut(s) 165
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 3 cut(s) 22, 200, 415
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 561, 724
PspEI GGTNACC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 561, 724
PspPI GGNCC 2 cut(s) 310, 491
PspPPI RGGWCCY 1 cut(s) 310
RseI CAYNNNNRTG 3 cut(s) 555, 688, 718
SaqAI TTAA 2 cut(s) 339, 402
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 2 cut(s) 351, 547
Sau96I GGNCC 2 cut(s) 310, 491
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 563, 726
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 57
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 3 cut(s) 555, 688, 718
Sse9I AATT 6 cut(s) 96, 207, 233, 473, 597, 631
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 2 cut(s) 46, 649
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 561, 724
TaiI ACGT 1 cut(s) 666
TaqI TCGA 1 cut(s) 57
TasI AATT 6 cut(s) 96, 207, 233, 473, 597, 631
TfiI GAWTC 3 cut(s) 22, 200, 415
Tru1I TTAA 2 cut(s) 339, 402
Tru9I TTAA 2 cut(s) 339, 402
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 2 cut(s) 407, 455
TspGWI ACGGA 2 cut(s) 181, 592
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 2 cut(s) 597, 631
ZraI GACGTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.