Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014605

Physical Location & Seq

Genomic Coordinates Reverse (-)

16299242 .. 16301245

Gene Structure 2004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTAATAAGAGTTTAGAGATTCGGTTTTTATTTCCACTTGTTTTGTTTTTGGTTGTGAAATTACTTTGTGTTGATGGTAAAGGATTCAATAATAATGGCCATAAGATAAGAAAAGGAAGATGGGAAGGTAAGCTGAAGATGAACTTCTATCACAATAGCTGCCCTGGAGCCGAGGATATCGTGAGGCAGATAGTGTGGAAGAAAGTCGAAGCAAACCGTAGCCTGGCTCCCAAGTTACTGAGGGTTCATTACCATGACTGCTTTGTTAGGGGGTGCGACGCATCGCTGCTTTTAGATTCGGTTGCTGGAAAAGCAGTGTCCGAGAAGGAAGCGAGACCTAATCTCTCGCTTTCCGGGTTTGAAATCATCGATGAGATCAAGTATATTCTCGAAAAACGATGCCCTAACACCGTCTCTTGCGCTGACATTCTCACTTTAGCCGCCCGAGATGCCGTCTCTTATGAATTTGAACGGCCGCTATGGAATGTGTTTACCGGACGTGTTGATGGAAGAGTTTCATTGGCAACGGAGGCGGCCAGAGACTTACCATCCGCTGGGGCAAACTTCACCACTCTACAGAAACTCTTTGCCGAGAGCGATTTGGACGTCGTTGACCTCGTCGCTTTATCAGGAGCACACACGATAGGAATAGCACATTGCGGTGTGTTTGGCAGAAGGCTCTTGAACTTCACCGGAAAAGGGGACACAGATCCTTCCCTAAACCCTAGTTACGCCTCCTTCCTCAAATCCGAATGCTCCGACAAATCTTTAAGACTCAACCCTTCCGCAGTGGTCGGAATGGACCCTACTGGTCCTCTCGCCTTTGACAGTGGCTACTTCGTCTCTCTACTCAAGAACAAAGGACTCTTCACCTCCGACGCCGCCTTGTTGACTGATCCCTCCGCCGCTCACATTGCTAGTGTTTTCCAAAACTCCGGCGCTTTTCTTGCTCAGTTTGGTCGGTCCATGATAAAGATGAGTTCCATCAAAGTCCTTACTCTTGGAGATCAAGGTGGTGAGATTCGTAAAAATTGTCGCCTCGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

350

Amino Acids

38.24

Weight (kDa)

8.89

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	62 - 312	8.1e-77	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39040
fragaria_vesca	FvH4_4g16970
malus_domestica	MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica	Prupe.1G143900_v2.0.a1
pyrus_communis	pycom13g15120
rosa_chinensis	RchiOBHm_Chr4g0420641
rosa_laevigata	RLG00000007745
rosa_multiflora	Rmu_sc0011080.1_g000008
rosa_roxburghii	Rroxscaffold_5G00363180
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana	Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	911
AciI	CCGC	9 cut(s)	444, 479, 536, 555, 663, 789, 885, 906, 909
AclWI	GGATC	2 cut(s)	707, 893
AcoI	YGGCCR	3 cut(s)	100, 476, 537
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	2 cut(s)	609, 882
AfiI	CCNNNNNNNGG	3 cut(s)	226, 557, 702
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	91, 365, 473, 688
AjiI	CACGTC	1 cut(s)	503
AjnI	CCWGG	2 cut(s)	166, 225
AluBI	AGCT	2 cut(s)	136, 162
AluI	AGCT	2 cut(s)	136, 162
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	5 cut(s)	331, 421, 463, 537, 850
AlwI	GGATC	2 cut(s)	707, 893
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	3 cut(s)	100, 476, 537
ApeKI	GCWGC	2 cut(s)	162, 289
ApoI	RAATTY	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	517
AspLEI	GCGC	2 cut(s)	425, 944
AspS9I	GGNCC	3 cut(s)	805, 815, 966
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	4 cut(s)	562, 685, 865, 1031
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	3 cut(s)	805, 815, 966
BalI	TGGCCA	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	2 cut(s)	149, 276
BccI	CCATC	5 cut(s)	71, 117, 503, 559, 995
BceAI	ACGGC	2 cut(s)	440, 491
BciT130I	CCWGG	2 cut(s)	168, 227
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	5 cut(s)	331, 421, 463, 537, 850
BfaI	CTAG	2 cut(s)	729, 921
BfmI	CTRYAG	1 cut(s)	578
BfoI	RGCGCY	1 cut(s)	945
BisI	GCNGC	7 cut(s)	163, 290, 444, 479, 537, 885, 909
BlsI	GCNGC	7 cut(s)	164, 291, 445, 480, 538, 886, 910
Bme1390I	CCNGG	3 cut(s)	168, 227, 358
Bme18I	GGWCC	3 cut(s)	805, 815, 966
BmeT110I	CYCGRG	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	503
BmgT120I	GGNCC	3 cut(s)	805, 815, 966
BmiI	GGNNCC	3 cut(s)	172, 231, 807
BmrFI	CCNGG	3 cut(s)	168, 227, 358
BmsI	GCATC	3 cut(s)	293, 392, 442
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	839
BpuMI	CCSGG	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	372
BsaHI	GRCGYC	2 cut(s)	609, 882
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	166, 174
BsaWI	WCCGGW	2 cut(s)	497, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 557, 702
Bse1I	ACTGG	1 cut(s)	817
Bse3DI	GCAATG	2 cut(s)	658, 915
BseBI	CCWGG	2 cut(s)	168, 227
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	166, 174
BseGI	GGATG	1 cut(s)	551
BseLI	CCNNNNNNNGG	3 cut(s)	226, 557, 702
BseMI	GCAATG	2 cut(s)	658, 915
BseMII	CTCAG	2 cut(s)	233, 968
BseNI	ACTGG	1 cut(s)	817
BseX3I	CGGCCG	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	149, 276
BseYI	CCCAGC	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	479
BshFI	GGCC	3 cut(s)	102, 478, 539
BshVI	ATCGAT	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	640
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	4 cut(s)	357, 498, 696, 939
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	3 cut(s)	226, 557, 702
BsmAI	GTCTC	5 cut(s)	331, 421, 463, 537, 850
BsmBI	CGTCTC	3 cut(s)	421, 463, 850
BsmFI	GGGAC	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	3 cut(s)	102, 478, 539
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	378, 712, 898, 1009
BspACI	CCGC	9 cut(s)	444, 479, 536, 555, 663, 789, 885, 906, 909
BspANI	GGCC	3 cut(s)	102, 478, 539
BspCNI	CTCAG	2 cut(s)	234, 967
BspDI	ATCGAT	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	172, 231, 807
BspPI	GGATC	2 cut(s)	707, 893
BspTNI	GGTCTC	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	911
BsrDI	GCAATG	2 cut(s)	658, 915
BsrI	ACTGG	1 cut(s)	817
BssECI	CCNNGG	2 cut(s)	166, 174
BssMI	GATC	4 cut(s)	378, 712, 898, 1009
BssNI	GRCGYC	2 cut(s)	609, 882
Bst2UI	CCWGG	2 cut(s)	168, 227
Bst4CI	ACNGT	3 cut(s)	221, 415, 833
Bst6I	CTCTTC	2 cut(s)	508, 875
BstACI	GRCGYC	2 cut(s)	609, 882
BstDEI	CTNAG	2 cut(s)	242, 954
BstF5I	GGATG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	945
BstHHI	GCGC	2 cut(s)	425, 944
BstKTI	GATC	4 cut(s)	381, 715, 901, 1012
BstMAI	GTCTC	5 cut(s)	331, 421, 463, 537, 850
BstMBI	GATC	4 cut(s)	378, 712, 898, 1009
BstMCI	CGRYCG	1 cut(s)	479
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 452, 533, 917, 950
BstNI	CCWGG	2 cut(s)	168, 227
BstSCI	CCNGG	3 cut(s)	166, 225, 356
BstSFI	CTRYAG	1 cut(s)	578
BstV1I	GCAGC	2 cut(s)	149, 276
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	102, 478, 539
BsuTUI	ATCGAT	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	270
BtrI	CACGTC	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	551
BtsI	GCAGTG	2 cut(s)	324, 798
BtsIMutI	CAGTG	3 cut(s)	324, 798, 838
CfoI	GCGC	2 cut(s)	425, 944
Cfr13I	GGNCC	3 cut(s)	805, 815, 966
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	2 cut(s)	290, 890
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	2 cut(s)	257, 970
DdeI	CTNAG	2 cut(s)	242, 954
DpnI	GATC	4 cut(s)	380, 714, 900, 1011
DpnII	GATC	4 cut(s)	378, 712, 898, 1009
EaeI	YGGCCR	3 cut(s)	100, 476, 537
EagI	CGGCCG	1 cut(s)	476
Eam1104I	CTCTTC	2 cut(s)	508, 875
EarI	CTCTTC	2 cut(s)	508, 875
EciI	GGCGGA	1 cut(s)	895
EclXI	CGGCCG	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	3 cut(s)	805, 815, 966
Eco52I	CGGCCG	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	166, 225
EcoRV	GATATC	1 cut(s)	181
Esp3I	CGTCTC	3 cut(s)	421, 463, 850
FaeI	CATG	2 cut(s)	260, 973
FaiI	YATR	6 cut(s)	105, 258, 387, 465, 484, 971
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	2 cut(s)	256, 969
Fnu4HI	GCNGC	7 cut(s)	163, 290, 444, 479, 537, 885, 909
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	7 cut(s)	163, 290, 444, 479, 537, 885, 909
FspBI	CTAG	2 cut(s)	729, 921
GlaI	GCGC	2 cut(s)	424, 943
GluI	GCNGC	7 cut(s)	163, 290, 444, 479, 537, 885, 909
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	945
HaeIII	GGCC	3 cut(s)	102, 478, 539
HapII	CCGG	4 cut(s)	357, 498, 696, 939
HgaI	GACGC	2 cut(s)	290, 890
HhaI	GCGC	2 cut(s)	425, 944
Hin1I	GRCGYC	2 cut(s)	609, 882
Hin1II	CATG	2 cut(s)	260, 973
Hin6I	GCGC	2 cut(s)	423, 942
HinP1I	GCGC	2 cut(s)	423, 942
HincII	GTYRAC	3 cut(s)	616, 894, 1048
HindII	GTYRAC	3 cut(s)	616, 894, 1048
HinfI	GANTC	6 cut(s)	22, 87, 299, 777, 867, 1024
HpaII	CCGG	4 cut(s)	357, 498, 696, 939
HphI	GGTGA	4 cut(s)	562, 685, 865, 1031
Hpy166II	GTNNAC	4 cut(s)	495, 616, 894, 1048
Hpy188I	TCNGA	5 cut(s)	325, 754, 763, 800, 880
Hpy188III	TCNNGA	5 cut(s)	184, 392, 633, 685, 856
Hpy8I	GTNNAC	4 cut(s)	495, 616, 894, 1048
Hpy99I	CGWCG	4 cut(s)	284, 614, 626, 884
HpyAV	CCTTC	6 cut(s)	122, 322, 672, 726, 751, 795
HpyCH4III	ACNGT	3 cut(s)	221, 415, 833
HpyCH4IV	ACGT	2 cut(s)	502, 609
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 452, 533, 917, 950
HpyF3I	CTNAG	2 cut(s)	242, 954
HpySE526I	ACGT	2 cut(s)	502, 609
Hsp92I	GRCGYC	2 cut(s)	609, 882
Hsp92II	CATG	2 cut(s)	260, 973
HspAI	GCGC	2 cut(s)	423, 942
Kzo9I	GATC	4 cut(s)	378, 712, 898, 1009
LmnI	GCTCC	4 cut(s)	170, 235, 635, 764
Lsp1109I	GCAGC	2 cut(s)	149, 276
LweI	GCATC	3 cut(s)	293, 392, 442
MaeI	CTAG	2 cut(s)	729, 921
MaeII	ACGT	2 cut(s)	502, 609
MaeIII	GTNAC	2 cut(s)	237, 731
MalI	GATC	4 cut(s)	380, 714, 900, 1011
MbiI	CCGCTC	1 cut(s)	911
MboI	GATC	4 cut(s)	378, 712, 898, 1009
MboII	GAAGA	5 cut(s)	132, 151, 214, 525, 862
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	640
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	62, 467, 1033
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	771, 861
MmeI	TCCRAC	3 cut(s)	778, 786, 903
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	773
MslI	CAYNNNNRTG	2 cut(s)	255, 663
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	4 cut(s)	357, 498, 696, 939
MspR9I	CCNGG	3 cut(s)	168, 227, 358
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	168, 227
MwoI	GCNNNNNNNGC	5 cut(s)	314, 452, 533, 917, 950
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	4 cut(s)	378, 712, 898, 1009
NlaIII	CATG	2 cut(s)	260, 973
NlaIV	GGNNCC	3 cut(s)	172, 231, 807
NmeAIII	GCCGAG	2 cut(s)	199, 619
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PctI	GAATGC	1 cut(s)	761
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	4 cut(s)	22, 87, 299, 1024
PflFI	GACNNNGTC	1 cut(s)	620
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	7 cut(s)	164, 291, 445, 480, 538, 886, 910
PleI	GAGTC	2 cut(s)	771, 861
PpsI	GAGTC	2 cut(s)	771, 861
Psp6I	CCWGG	2 cut(s)	166, 225
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	2 cut(s)	166, 225
PspN4I	GGNNCC	3 cut(s)	172, 231, 807
PspPI	GGNCC	3 cut(s)	805, 815, 966
PsuI	RGATCY	1 cut(s)	712
PsyI	GACNNNGTC	1 cut(s)	620
RseI	CAYNNNNRTG	2 cut(s)	255, 663
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	7 cut(s)	163, 290, 444, 479, 537, 885, 909
Sau3AI	GATC	4 cut(s)	378, 712, 898, 1009
Sau96I	GGNCC	3 cut(s)	805, 815, 966
SchI	GAGTC	2 cut(s)	771, 861
ScrFI	CCNGG	3 cut(s)	168, 227, 358
SduI	GDGCHC	1 cut(s)	640
SetI	ASST	9 cut(s)	133, 138, 164, 343, 505, 612, 621, 878, 1018
SfaNI	GCATC	3 cut(s)	293, 392, 442
SfcI	CTRYAG	1 cut(s)	578
SinI	GGWCC	3 cut(s)	805, 815, 966
SmiMI	CAYNNNNRTG	2 cut(s)	255, 663
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	3 cut(s)	62, 467, 1033
SsiI	CCGC	9 cut(s)	444, 479, 536, 555, 663, 789, 885, 906, 909
SspMI	CTAG	2 cut(s)	729, 921
StyD4I	CCNGG	3 cut(s)	166, 225, 356
TaaI	ACNGT	3 cut(s)	221, 415, 833
TaiI	ACGT	2 cut(s)	505, 612
TaqI	TCGA	3 cut(s)	210, 372, 393
TaqII	GACCGA	1 cut(s)	954
TasI	AATT	3 cut(s)	62, 467, 1033
TauI	GCSGC	5 cut(s)	446, 481, 539, 887, 911
TfiI	GAWTC	4 cut(s)	22, 87, 299, 1024
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TscAI	CASTG	3 cut(s)	324, 798, 838
TseI	GCWGC	2 cut(s)	162, 289
TspDTI	ATGAA	4 cut(s)	158, 239, 480, 510
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	3 cut(s)	324, 798, 838
Tth111I	GACNNNGTC	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	3 cut(s)	805, 815, 966
XapI	RAATTY	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	2 cut(s)	729, 921
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.