Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014605

Physical Location & Seq

Genomic Coordinates Forward (+)

15066943 .. 15068633

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1177000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAGGCCTAGCATAAATGTGGTGTTAGTTTCTCTTCTTGTGCTCGTTGACGTTGTTAGCGTTTGTAATGGCGGTCTCGGTGGGCTGAGTCCGGTGTTCTATCACAAGAGTTGCCCTGAAATTGGAAGAATAGTGAGGAATATCACATGGAGCAAGGTTGCAGAAAATCCTACCATGGCAGCAAAGCTTCTAAGGATGCACTACCATGACTGTTTTGTTAGGGGATGTGATGCATCACTATTGCTAGATTCAACCAGCGACAACACGGCGGAGAAGGAAGCAATACAAAACAGGAATATTAGAGGTTATGAGGTTATTGATGAAATTAAAGCCAGATTAGAAGAAGAGTGTCCCGGCATCGTCTCATGTGCTGATATTGTTGCCTTGGCAGCCAGAGATGCTGTCTCTTATCAATTTGGAAGGCCGATGTGGCAGGTTTTAACCGGGAGAAAAGATGGAAAAGTCTCCCTTTCGTCAGAGGCTTCAGCAAACTTACCCTCCGCAGGTGCAAACTTCACCACACTCTACCAGCAATTTATTGGTTTGGGGCTGAATGTCATAGATCTTGTGGCATTATCAGGGGCACATACAATTGGAGTGGCACATTGCGGTGTATTTCAAAGGAGACTGAACGTAACCGGAAAAGGTGACGTAGACCCTACACTTGATCCAGAATACGCAGAGTTTTTGAGAACACAATGCACCACTCCGGCCGTCGCGGTGGCGCTGGACGCCAACAGCTCAGTTTCCTTTGACAGTCATTACTTTGCGGGGTTGAGGCAAAACAAAGGCCTCTTGACATCAGATGCTGCCCTACTCACTGACCGGCGTTCGGCTCGGATTGTTAGACGTTTTGAGAGGTTCCATATTTTCATGACCTACTTTGGGAATTCAATGAAGAAAATGGGTGCCATTGGAGTCAAAACACGAGAGCAGGATGGTGGAGAGATTAGAAAGAATTGCAGGGTTGTTAATGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 ko04978 map00940 map01100 map01110 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

328

Amino Acids

35.72

Weight (kDa)

8.54

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	45 - 286	7.9e-79	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39040
fragaria_vesca	FvH4_4g16970
malus_domestica	MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica	Prupe.1G143900_v2.0.a1
pyrus_communis	pycom13g15120
rosa_chinensis	RchiOBHm_Chr4g0420641
rosa_laevigata	RLG00000007745
rosa_multiflora	Rmu_sc0011080.1_g000008
rosa_roxburghii	Rroxscaffold_5G00363180
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana	Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	494
Acc36I	ACCTGC	2 cut(s)	424, 494
AccB1I	GGYRCC	1 cut(s)	908
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	719
AciI	CCGC	6 cut(s)	72, 269, 501, 609, 719, 770
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	1 cut(s)	889
AcuI	CTGAAG	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	732
AfiI	CCNNNNNNNGG	4 cut(s)	122, 503, 832, 885
AgsI	TTSAA	3 cut(s)	252, 620, 894
AluBI	AGCT	2 cut(s)	187, 741
AluI	AGCT	2 cut(s)	187, 741
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	5 cut(s)	80, 367, 409, 469, 619
AlwI	GGATC	1 cut(s)	662
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	4 cut(s)	5, 422, 711, 790
ApeKI	GCWGC	3 cut(s)	179, 389, 809
ApoI	RAATTY	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	727
AsuC2I	CCSGG	2 cut(s)	354, 445
AsuHPI	GGTGA	2 cut(s)	508, 659
BaeGI	GKGCMC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	908
BauI	CACGAG	1 cut(s)	927
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	191, 401, 796
BccI	CCATC	2 cut(s)	449, 932
BceAI	ACGGC	2 cut(s)	282, 698
BcnI	CCSGG	2 cut(s)	354, 445
BcoDI	GTCTC	5 cut(s)	80, 367, 409, 469, 619
BfaI	CTAG	2 cut(s)	9, 245
BfoI	RGCGCY	1 cut(s)	728
BfuAI	ACCTGC	2 cut(s)	424, 494
BglI	GCCNNNNNGGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	3 cut(s)	180, 390, 810
BlsI	GCNGC	3 cut(s)	181, 391, 811
Bme1390I	CCNGG	2 cut(s)	354, 445
BmiI	GGNNCC	2 cut(s)	863, 910
BmrFI	CCNGG	2 cut(s)	354, 445
BmsI	GCATC	6 cut(s)	186, 220, 242, 366, 388, 796
BpuMI	CCSGG	2 cut(s)	354, 445
BsaHI	GRCGYC	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	174, 384
BsaWI	WCCGGW	2 cut(s)	91, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 503, 832, 885
Bse118I	RCCGGY	1 cut(s)	825
Bse3DI	GCAATG	1 cut(s)	604
BseDI	CCNNGG	2 cut(s)	174, 384
BseGI	GGATG	3 cut(s)	201, 230, 943
BseLI	CCNNNNNNNGG	4 cut(s)	122, 503, 832, 885
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	77, 756
BseSI	GKGCMC	1 cut(s)	586
BseX3I	CGGCCG	1 cut(s)	711
BseXI	GCAGC	3 cut(s)	191, 401, 796
Bsh1236I	CGCG	1 cut(s)	719
Bsh1285I	CGRYCG	1 cut(s)	714
BshFI	GGCC	4 cut(s)	7, 424, 713, 792
BshNI	GGYRCC	1 cut(s)	908
BsiEI	CGRYCG	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	6 cut(s)	92, 354, 444, 639, 710, 826
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	4 cut(s)	122, 503, 832, 885
BsmAI	GTCTC	5 cut(s)	80, 367, 409, 469, 619
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	4 cut(s)	7, 424, 713, 792
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	45, 586
Bsp143I	GATC	2 cut(s)	562, 667
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	6 cut(s)	72, 269, 501, 609, 719, 770
BspANI	GGCC	4 cut(s)	7, 424, 713, 792
BspCNI	CTCAG	2 cut(s)	78, 755
BspFNI	CGCG	1 cut(s)	719
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	2 cut(s)	863, 910
BspMI	ACCTGC	2 cut(s)	424, 494
BspPI	GGATC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	825
BssAI	RCCGGY	1 cut(s)	825
BssECI	CCNNGG	2 cut(s)	174, 384
BssMI	GATC	2 cut(s)	562, 667
BssNI	GRCGYC	1 cut(s)	732
BssSI	CACGAG	1 cut(s)	927
BssT1I	CCWWGG	2 cut(s)	174, 384
Bst2BI	CACGAG	1 cut(s)	927
Bst4CI	ACNGT	2 cut(s)	212, 758
Bst6I	CTCTTC	2 cut(s)	39, 339
BstACI	GRCGYC	1 cut(s)	732
BstDEI	CTNAG	3 cut(s)	86, 191, 742
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	201, 230, 943
BstFNI	CGCG	1 cut(s)	719
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	2 cut(s)	565, 670
BstMAI	GTCTC	5 cut(s)	80, 367, 409, 469, 619
BstMBI	GATC	2 cut(s)	562, 667
BstMCI	CGRYCG	1 cut(s)	714
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 398, 430, 731
BstSCI	CCNGG	2 cut(s)	352, 443
BstSLI	GKGCMC	1 cut(s)	586
BstUI	CGCG	1 cut(s)	719
BstV1I	GCAGC	3 cut(s)	191, 401, 796
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BstZI	CGGCCG	1 cut(s)	711
BsuRI	GGCC	4 cut(s)	7, 424, 713, 792
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	201, 230, 943
BtsIMutI	CAGTG	1 cut(s)	819
BveI	ACCTGC	2 cut(s)	424, 494
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	1 cut(s)	727
Cfr10I	RCCGGY	1 cut(s)	825
CseI	GACGC	1 cut(s)	740
CspCI	CAANNNNNGTGG	2 cut(s)	579, 614
CviAII	CATG	5 cut(s)	147, 175, 206, 366, 874
DdeI	CTNAG	3 cut(s)	86, 191, 742
DpnI	GATC	2 cut(s)	564, 669
DpnII	GATC	2 cut(s)	562, 667
EaeI	YGGCCR	1 cut(s)	711
EagI	CGGCCG	1 cut(s)	711
Eam1104I	CTCTTC	2 cut(s)	39, 339
EarI	CTCTTC	2 cut(s)	39, 339
EciI	GGCGGA	1 cut(s)	284
EclXI	CGGCCG	1 cut(s)	711
Eco130I	CCWWGG	2 cut(s)	174, 384
Eco147I	AGGCCT	2 cut(s)	7, 792
Eco31I	GGTCTC	1 cut(s)	80
Eco52I	CGGCCG	1 cut(s)	711
Eco57I	CTGAAG	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	889
EcoT14I	CCWWGG	2 cut(s)	174, 384
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	2 cut(s)	174, 384
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	5 cut(s)	150, 178, 209, 369, 877
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	5 cut(s)	146, 174, 205, 365, 873
FauI	CCCGC	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	3 cut(s)	180, 390, 810
FokI	GGATG	3 cut(s)	208, 237, 950
Fsp4HI	GCNGC	3 cut(s)	180, 390, 810
FspBI	CTAG	2 cut(s)	9, 245
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	3 cut(s)	180, 390, 810
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	4 cut(s)	7, 424, 713, 792
HapII	CCGG	6 cut(s)	92, 354, 444, 639, 710, 826
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	1 cut(s)	727
Hin1I	GRCGYC	1 cut(s)	732
Hin1II	CATG	5 cut(s)	150, 178, 209, 369, 877
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	88, 248, 918
HpaII	CCGG	6 cut(s)	92, 354, 444, 639, 710, 826
HphI	GGTGA	2 cut(s)	508, 659
Hpy166II	GTNNAC	2 cut(s)	49, 655
Hpy188I	TCNGA	3 cut(s)	478, 805, 840
Hpy188III	TCNNGA	3 cut(s)	671, 796, 874
Hpy8I	GTNNAC	2 cut(s)	49, 655
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	2 cut(s)	268, 414
HpyCH4III	ACNGT	2 cut(s)	212, 758
HpyCH4IV	ACGT	4 cut(s)	51, 633, 651, 850
HpyCH4V	TGCA	6 cut(s)	161, 199, 233, 509, 702, 963
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 398, 430, 731
HpyF3I	CTNAG	3 cut(s)	86, 191, 742
HpySE526I	ACGT	4 cut(s)	51, 633, 651, 850
Hsp92I	GRCGYC	1 cut(s)	732
Hsp92II	CATG	5 cut(s)	150, 178, 209, 369, 877
HspAI	GCGC	1 cut(s)	725
Kzo9I	GATC	2 cut(s)	562, 667
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	3 cut(s)	191, 401, 796
LweI	GCATC	6 cut(s)	186, 220, 242, 366, 388, 796
MaeI	CTAG	2 cut(s)	9, 245
MaeII	ACGT	4 cut(s)	51, 633, 651, 850
MaeIII	GTNAC	2 cut(s)	634, 647
MalI	GATC	2 cut(s)	564, 669
MboI	GATC	2 cut(s)	562, 667
MboII	GAAGA	5 cut(s)	26, 138, 353, 356, 910
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	2 cut(s)	45, 586
MluCI	AATT	8 cut(s)	120, 324, 413, 533, 591, 889, 958, 979
MlyI	GAGTC	2 cut(s)	97, 927
MnlI	CCTC	8 cut(s)	129, 296, 304, 472, 508, 771, 803, 852
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	4 cut(s)	327, 440, 972, 982
MslI	CAYNNNNRTG	3 cut(s)	17, 204, 609
MspI	CCGG	6 cut(s)	92, 354, 444, 639, 710, 826
MspR9I	CCNGG	2 cut(s)	354, 445
MunI	CAATTG	1 cut(s)	591
MvnI	CGCG	1 cut(s)	719
MwoI	GCNNNNNNNGC	4 cut(s)	389, 398, 430, 731
NciI	CCSGG	2 cut(s)	354, 445
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	562, 667
NlaIII	CATG	5 cut(s)	150, 178, 209, 369, 877
NlaIV	GGNNCC	2 cut(s)	863, 910
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	235
PagI	TCATGA	1 cut(s)	873
PaqCI	CACCTGC	1 cut(s)	494
PceI	AGGCCT	2 cut(s)	7, 792
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	181, 391, 811
PleI	GAGTC	2 cut(s)	96, 926
PpsI	GAGTC	2 cut(s)	96, 926
PspN4I	GGNNCC	2 cut(s)	863, 910
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	562
RseI	CAYNNNNRTG	3 cut(s)	17, 204, 609
SaqAI	TTAA	4 cut(s)	327, 440, 972, 982
SatI	GCNGC	3 cut(s)	180, 390, 810
Sau3AI	GATC	2 cut(s)	562, 667
SchI	GAGTC	2 cut(s)	97, 927
ScrFI	CCNGG	2 cut(s)	354, 445
SduI	GDGCHC	2 cut(s)	45, 586
SfaNI	GCATC	6 cut(s)	186, 220, 242, 366, 388, 796
SmiMI	CAYNNNNRTG	3 cut(s)	17, 204, 609
Sse9I	AATT	8 cut(s)	120, 324, 413, 533, 591, 889, 958, 979
SseBI	AGGCCT	2 cut(s)	7, 792
SsiI	CCGC	6 cut(s)	72, 269, 501, 609, 719, 770
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	2 cut(s)	9, 245
StuI	AGGCCT	2 cut(s)	7, 792
StyD4I	CCNGG	2 cut(s)	352, 443
StyI	CCWWGG	2 cut(s)	174, 384
TaaI	ACNGT	2 cut(s)	212, 758
TaiI	ACGT	4 cut(s)	54, 636, 654, 853
TasI	AATT	8 cut(s)	120, 324, 413, 533, 591, 889, 958, 979
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	4 cut(s)	327, 440, 972, 982
Tru9I	TTAA	4 cut(s)	327, 440, 972, 982
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	3 cut(s)	179, 389, 809
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	336, 862, 911
TspRI	CASTG	1 cut(s)	826
XapI	RAATTY	1 cut(s)	889
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	2 cut(s)	9, 245
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.