Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014605

Physical Location & Seq

Genomic Coordinates Reverse (-)

39325227 .. 39371839

Gene Structure 46613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAGGGCAAACGTAAACGTTGTGTTGGTTTCTCTTCTTGTTTTTTTAGCTATTAGTTCTTGTAATGGAGGTCAGCTGAGTCCGGTGTTCTACCGCAAGAGTTGCCCGCAACTTGGAAGTATAGTGAGGAACATTACATGGAGCAAAGTTGCAGCAAACCCTACCTTCGCAGCTAAGCTTCTACGGCTGCATTACCATGATTGCTTTGTCCAGGGATGTGATGCATCGCTATTGATAGATTCAACGGACGGCAACACGGCGGAGAAGGATGCAAGACCAAACGGGTCGATTGAAGGTTATGAAGTTCTTGACGAAATAAAAGCCAAATTAGAAGAAGAGTGTCCCGATATCGTCTCGTGTGCTGATATAGTTGCTTTGGCAGCCAGAGATGCTGTTTCTTACCAATTTGGCAGGTCCATGTGGCAGGTTTTTGGAGGGAGGAAAGATGGAAGAGTTTCACTTGCCACGGAGGCTGCAAGGGACTTGCCTTCCGGAGGTGCAAACTACACCACACTCCAAGACCAATTTGCTGGTTTAGGGCTAAACTACATAGATCTTGTTGCCTTATCAGGGGCGCATACCATCGGAGTAGCACATTGCGTAGTATTTGCAAGGAGACTGAACTTCACAGGAAAAGGGGACATAGACCCCTCACTTGATCCAGCATATGCAGAGTTCTTGAAAACACAATGCCCCAGCAGACCTAATCCGGCTACCACCGTAGAGCTTGACGAAAATAGCTCACTTTCTTTCGACAGCAACTACTATGTGGGTCTGAGGCAGAACAAAGGCCTGCTCGGATCAGATGCTGCCCTGCTCACTGACCGGCGGGCGGCTTGGGTTGCAAGAAGATTCCAAAATTTCCATGTCTTCATGGCTCGCTTTGGTAAGTCAATGATGAAAATGGGTGACATTGGAATCAAAACAGGAGATGATGGAGAAATTAGGAAGAACTGCAGAGTAGTCGTTGCAGAATTCAAAGTCTCAATGCACTGCAATGCATGTGAAAGAATAGTTGCCAAAACCCTATTGAAAATCAAAGGGGTGGACCAGTTTGCAACAGACATGAACAACCACAAGGTTGTGGTAACGGGGAAGATTGATCCAGAAAAGGTTTTGAAGAAACTAAGGAAAAAGACGGGGAAGAAAGTAGAGATTATTGATGACAAGGAAGAAAAACCAAAAGATGCGTCGGATGAAGGAAATTGGGCAAGACCATTAATTGTTCATCCACTCATGTTAGATTGCTGCAAGGAGACCGATCAGTTACTTATGTTGTTTAGTGATGAGAATCCAAATGCTTGTTCCATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 ko04978 map00940 map01100 map01110 map04978

Pfam Domains

Protein Families

HMA

Protein Analysis

438

Amino Acids

48.15

Weight (kDa)

7.48

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 286	1.7e-77	Peroxidase
HMA	PF00403	326 - 382	1.4e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39040
fragaria_vesca	FvH4_4g16970
malus_domestica	MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica	Prupe.1G143900_v2.0.a1
pyrus_communis	pycom13g15120
rosa_chinensis	RchiOBHm_Chr4g0420641
rosa_laevigata	RLG00000007745
rosa_multiflora	Rmu_sc0011080.1_g000008
rosa_roxburghii	Rroxscaffold_5G00363180
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana	Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	402, 415
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	5 cut(s)	94, 107, 260, 829, 833
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	3 cut(s)	653, 808, 1097
AcsI	RAATTY	2 cut(s)	859, 974
AfiI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
AgsI	TTSAA	6 cut(s)	243, 293, 682, 979, 1033, 1120
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	1 cut(s)	1288
AluBI	AGCT	6 cut(s)	50, 76, 173, 178, 727, 741
AluI	AGCT	6 cut(s)	50, 76, 173, 178, 727, 741
Alw26I	GTCTC	4 cut(s)	358, 610, 988, 1250
AlwI	GGATC	3 cut(s)	653, 808, 1097
AlwNI	CAGNNNCTG	1 cut(s)	809
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	7 cut(s)	152, 170, 187, 380, 473, 809, 1248
ApoI	RAATTY	2 cut(s)	859, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	1175, 1207
AseI	ATTAAT	1 cut(s)	1220
Asp700I	GAANNNNTTC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	2 cut(s)	414, 1048
AsuHPI	GGTGA	1 cut(s)	920
AvaII	GGWCC	2 cut(s)	414, 1048
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	862
BbvI	GCAGC	7 cut(s)	164, 174, 182, 392, 460, 796, 1235
BccI	CCATC	3 cut(s)	440, 590, 929
BceAI	ACGGC	3 cut(s)	200, 265, 273
BcgI	CGANNNNNNTGC	2 cut(s)	946, 980
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	4 cut(s)	358, 610, 988, 1250
BfmI	CTRYAG	1 cut(s)	955
BfuAI	ACCTGC	2 cut(s)	402, 415
BglI	GCCNNNNNGGC	1 cut(s)	470
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	8 cut(s)	153, 171, 188, 381, 474, 810, 834, 1249
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	8 cut(s)	154, 172, 189, 382, 475, 811, 835, 1250
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	414, 1048
BmgT120I	GGNCC	2 cut(s)	414, 1048
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	6 cut(s)	211, 233, 259, 379, 796, 1177
BpiI	GAAGAC	1 cut(s)	862
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	1290
BsaI	GGTCTC	1 cut(s)	1250
BsaJI	CCNNGG	2 cut(s)	211, 465
BsaWI	WCCGGW	2 cut(s)	82, 491
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
Bse118I	RCCGGY	1 cut(s)	825
Bse1I	ACTGG	1 cut(s)	1051
Bse3DI	GCAATG	2 cut(s)	595, 1003
Bse8I	GATNNNNATC	1 cut(s)	1290
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	211, 465
BseGI	GGATG	4 cut(s)	221, 274, 1201, 1228
BseJI	GATNNNNATC	1 cut(s)	1290
BseLI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
BseMI	GCAATG	2 cut(s)	595, 1003
BseMII	CTCAG	2 cut(s)	68, 767
BseNI	ACTGG	1 cut(s)	1051
BseXI	GCAGC	7 cut(s)	164, 174, 182, 392, 460, 796, 1235
BseYI	CCCAGC	1 cut(s)	695
BshFI	GGCC	1 cut(s)	792
BsiSI	CCGG	4 cut(s)	83, 492, 710, 826
BslFI	GGGAC	3 cut(s)	327, 494, 653
BslI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
BsmAI	GTCTC	4 cut(s)	358, 610, 988, 1250
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	3 cut(s)	327, 494, 653
BsnI	GGCC	1 cut(s)	792
Bso31I	GGTCTC	1 cut(s)	1250
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	5 cut(s)	553, 658, 800, 1102, 1261
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	5 cut(s)	94, 107, 260, 829, 833
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	2 cut(s)	69, 768
BspEI	TCCGGA	1 cut(s)	491
BspMAI	CTGCAG	1 cut(s)	959
BspMI	ACCTGC	2 cut(s)	402, 415
BspPI	GGATC	3 cut(s)	653, 808, 1097
BspTNI	GGTCTC	1 cut(s)	1250
BsrDI	GCAATG	2 cut(s)	595, 1003
BsrFI	RCCGGY	1 cut(s)	825
BsrI	ACTGG	1 cut(s)	1051
BssAI	RCCGGY	1 cut(s)	825
BssECI	CCNNGG	2 cut(s)	211, 465
BssMI	GATC	5 cut(s)	553, 658, 800, 1102, 1261
BssSI	CACGAG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	3 cut(s)	39, 330, 445
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	4 cut(s)	107, 794, 831, 880
BstDEI	CTNAG	4 cut(s)	77, 174, 776, 1127
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	4 cut(s)	221, 274, 1201, 1228
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	5 cut(s)	556, 661, 803, 1105, 1264
BstMAI	GTCTC	4 cut(s)	358, 610, 988, 1250
BstMBI	GATC	5 cut(s)	553, 658, 800, 1102, 1261
BstMWI	GCNNNNNNNGC	6 cut(s)	102, 184, 380, 389, 470, 842
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	1005
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	955
BstV1I	GCAGC	7 cut(s)	164, 174, 182, 392, 460, 796, 1235
BstV2I	GAAGAC	1 cut(s)	862
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	221, 274, 1201, 1228
BtsI	GCAGTG	1 cut(s)	991
BtsIMutI	CAGTG	2 cut(s)	819, 991
BveI	ACCTGC	2 cut(s)	402, 415
Cac8I	GCNNGC	4 cut(s)	107, 794, 831, 880
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	825
Cfr13I	GGNCC	2 cut(s)	414, 1048
CseI	GACGC	1 cut(s)	1179
CviAII	CATG	8 cut(s)	138, 197, 418, 866, 874, 1002, 1066, 1237
DdeI	CTNAG	4 cut(s)	77, 174, 776, 1127
DpnI	GATC	5 cut(s)	555, 660, 802, 1104, 1263
DpnII	GATC	5 cut(s)	553, 658, 800, 1102, 1261
Eam1104I	CTCTTC	3 cut(s)	39, 330, 445
EarI	CTCTTC	3 cut(s)	39, 330, 445
EciI	GGCGGA	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	1250
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	2 cut(s)	414, 1048
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	974
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	349
EcoT22I	ATGCAT	2 cut(s)	226, 1003
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	8 cut(s)	141, 200, 421, 869, 877, 1005, 1069, 1240
FaqI	GGGAC	3 cut(s)	327, 494, 653
FatI	CATG	8 cut(s)	137, 196, 417, 865, 873, 1001, 1065, 1236
FauI	CCCGC	2 cut(s)	114, 822
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	8 cut(s)	153, 171, 188, 381, 474, 810, 834, 1249
FokI	GGATG	4 cut(s)	228, 281, 1208, 1215
Fsp4HI	GCNGC	8 cut(s)	153, 171, 188, 381, 474, 810, 834, 1249
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	8 cut(s)	153, 171, 188, 381, 474, 810, 834, 1249
GsaI	CCCAGC	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	4 cut(s)	83, 492, 710, 826
HgaI	GACGC	1 cut(s)	1179
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	8 cut(s)	141, 200, 421, 869, 877, 1005, 1069, 1240
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	5 cut(s)	79, 239, 852, 918, 1291
HpaII	CCGG	4 cut(s)	83, 492, 710, 826
HphI	GGTGA	1 cut(s)	920
Hpy166II	GTNNAC	2 cut(s)	16, 1048
Hpy188I	TCNGA	5 cut(s)	587, 777, 800, 805, 1195
Hpy188III	TCNNGA	5 cut(s)	308, 344, 492, 679, 1106
Hpy8I	GTNNAC	2 cut(s)	16, 1048
Hpy99I	CGWCG	1 cut(s)	1195
HpyAV	CCTTC	5 cut(s)	175, 259, 287, 498, 1193
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	12, 18
HpyF10VI	GCNNNNNNNGC	6 cut(s)	102, 184, 380, 389, 470, 842
HpyF3I	CTNAG	4 cut(s)	77, 174, 776, 1127
HpySE526I	ACGT	2 cut(s)	12, 18
Hsp92II	CATG	8 cut(s)	141, 200, 421, 869, 877, 1005, 1069, 1240
HspAI	GCGC	1 cut(s)	575
Kpn2I	TCCGGA	1 cut(s)	491
Kzo9I	GATC	5 cut(s)	553, 658, 800, 1102, 1261
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	7 cut(s)	164, 174, 182, 392, 460, 796, 1235
LweI	GCATC	6 cut(s)	211, 233, 259, 379, 796, 1177
MaeII	ACGT	2 cut(s)	12, 18
MaeIII	GTNAC	3 cut(s)	908, 1087, 1266
MalI	GATC	5 cut(s)	555, 660, 802, 1104, 1263
MboI	GATC	5 cut(s)	553, 658, 800, 1102, 1261
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	8 cut(s)	326, 404, 524, 859, 942, 974, 1204, 1221
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	1173
MnlI	CCTC	8 cut(s)	62, 120, 428, 432, 463, 488, 661, 771
Mph1103I	ATGCAT	2 cut(s)	226, 1003
MroI	TCCGGA	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	454
MseI	TTAA	1 cut(s)	1220
MslI	CAYNNNNRTG	2 cut(s)	195, 996
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	4 cut(s)	83, 492, 710, 826
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	6 cut(s)	102, 184, 380, 389, 470, 842
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	5 cut(s)	553, 658, 800, 1102, 1261
NlaIII	CATG	8 cut(s)	141, 200, 421, 869, 877, 1005, 1069, 1240
NmuCI	GTSAC	1 cut(s)	908
NsiI	ATGCAT	2 cut(s)	226, 1003
NspI	RCATGY	1 cut(s)	1005
PceI	AGGCCT	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	4 cut(s)	239, 852, 918, 1291
PkrI	GCNGC	8 cut(s)	154, 172, 189, 382, 475, 811, 835, 1250
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	1220
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	414, 1048
PstI	CTGCAG	1 cut(s)	959
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	76
RseI	CAYNNNNRTG	2 cut(s)	195, 996
SaqAI	TTAA	1 cut(s)	1220
SatI	GCNGC	8 cut(s)	153, 171, 188, 381, 474, 810, 834, 1249
Sau3AI	GATC	5 cut(s)	553, 658, 800, 1102, 1261
Sau96I	GGNCC	2 cut(s)	414, 1048
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	212
SfaNI	GCATC	6 cut(s)	211, 233, 259, 379, 796, 1177
SfcI	CTRYAG	1 cut(s)	955
SinI	GGWCC	2 cut(s)	414, 1048
SmiMI	CAYNNNNRTG	2 cut(s)	195, 996
Sse9I	AATT	8 cut(s)	326, 404, 524, 859, 942, 974, 1204, 1221
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	5 cut(s)	94, 107, 260, 829, 833
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	15, 21
TaqI	TCGA	2 cut(s)	287, 753
TaqII	GACCGA	1 cut(s)	1274
TasI	AATT	8 cut(s)	326, 404, 524, 859, 942, 974, 1204, 1221
TauI	GCSGC	1 cut(s)	836
TfiI	GAWTC	4 cut(s)	239, 852, 918, 1291
Tru1I	TTAA	1 cut(s)	1220
Tru9I	TTAA	1 cut(s)	1220
TscAI	CASTG	2 cut(s)	826, 998
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	7 cut(s)	152, 170, 187, 380, 473, 809, 1248
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	6 cut(s)	315, 862, 914, 1082, 1212, 1217
TspGWI	ACGGA	2 cut(s)	260, 482
TspRI	CASTG	2 cut(s)	826, 998
VpaK11BI	GGWCC	2 cut(s)	414, 1048
VspI	ATTAAT	1 cut(s)	1220
XagI	CCTNNNNNAGG	1 cut(s)	492
XapI	RAATTY	2 cut(s)	859, 974
XceI	RCATGY	1 cut(s)	1005
XmnI	GAANNNNTTC	1 cut(s)	454
Zsp2I	ATGCAT	2 cut(s)	226, 1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.