Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014605

Physical Location & Seq

Genomic Coordinates Forward (+)

14485822 .. 14487459

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1175300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGCCTAGCATAAATGCGGTGTTAGTTTCTCTTCTTCTGCTCATTGACGTTGTTAGCGTTTGTCATGGCGGTGGGCTGAGTCCGGTGTTCTATGAAAAGAGTTGCCCTCAAATTGACAGAATAGTGAGGAACATCACATGGAGCAAGGTTGCAGAAAATTCTACCATGGCACCGAAGCTTCTACGGATGCACTACCATGACTGTTTTGTTAGGGGATGTGATGCATCATTATTGCTAGATTCAACCAGCGGGAACCCGGCGGAGAAGGAAGCAATACAAAACAGTAATATTAGAGGTTATGAGGTTATTGATGAAATAAAAACCAGATTAGAACAAGAGTGTCCCGGCATCGTCTCATGTGCTGATATTGTTGCCTTGTTTGGAAGGCCCATGTGGCAGGTTTTAACCGGGAGAAAAGATGGAAAAGTCTCCCTTTCGTCAGAGGCTTCAATAAACTTACCCTCCGCAGGTGCAAACTTCACCACACTCTACCAGCAATTTATTGGTTTGGGGCTGAACATCATAGATCTTGTGGCTTTATCAGGTATGAGCACATACAATTGGAGTGGCACATTGCGCAGTATTTCAAAGGAGACTGACGTAACCGGAAAGGGTGACATAGACCCTACACTTGATCCAGAATACGCAGAGTTCGTGAGAACACAATGCACCAACCCGGGCGTCGCCGTGGCACTGGACGCCAACAGCTCAGCTTCCTTTGACAGCCATTACTTTGCGGGGTTGAGGCAAAACAAAGGCCTCTTGAGATCAGATGCTGCGCTGCTCACTGACCGGCGTTCGGCTCACATTGTAAGACGTTTTGAGAAGTTCCCTGTTTTCATGACCTACTTTGGGAATTCAATGAAGAAAATGGGTTCCATTGGAGTCATAACACGAGAAGAGGATGGCGGAGAGATTAGAAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

311

Amino Acids

33.97

Weight (kDa)

6.53

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	43 - 276	1.1e-58	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39040
fragaria_vesca	FvH4_4g16970
malus_domestica	MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica	Prupe.1G143900_v2.0.a1
pyrus_communis	pycom13g15120
rosa_chinensis	RchiOBHm_Chr4g0420641
rosa_laevigata	RLG00000007745
rosa_multiflora	Rmu_sc0011080.1_g000008
rosa_roxburghii	Rroxscaffold_5G00363180
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana	Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc16I	TGCGCA	1 cut(s)	581
Acc36I	ACCTGC	2 cut(s)	391, 461
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	7 cut(s)	20, 72, 252, 263, 468, 740, 912
AclWI	GGATC	1 cut(s)	632
AcsI	RAATTY	2 cut(s)	160, 859
AcyI	GRCGYC	2 cut(s)	684, 702
AfiI	CCNNNNNNNGG	3 cut(s)	470, 802, 855
AgsI	TTSAA	4 cut(s)	246, 453, 591, 864
AluBI	AGCT	3 cut(s)	181, 711, 716
AluI	AGCT	3 cut(s)	181, 711, 716
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	3 cut(s)	361, 436, 590
AlwI	GGATC	1 cut(s)	632
AlwNI	CAGNNNCTG	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	679
AoxI	GGCC	2 cut(s)	389, 760
ApeKI	GCWGC	2 cut(s)	779, 784
ApoI	RAATTY	2 cut(s)	160, 859
AspLEI	GCGC	2 cut(s)	582, 784
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	5 cut(s)	260, 348, 412, 680, 681
AsuHPI	GGTGA	2 cut(s)	475, 629
AvaI	CYCGRG	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	2 cut(s)	766, 771
BccI	CCATC	2 cut(s)	416, 902
BceAI	ACGGC	1 cut(s)	674
BcnI	CCSGG	5 cut(s)	260, 348, 412, 680, 681
BcoDI	GTCTC	3 cut(s)	361, 436, 590
BfaI	CTAG	2 cut(s)	9, 239
BfuAI	ACCTGC	2 cut(s)	391, 461
BglI	GCCNNNNNGGC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	2 cut(s)	780, 785
BlpI	GCTNAGC	1 cut(s)	712
BlsI	GCNGC	2 cut(s)	781, 786
Bme1390I	CCNGG	5 cut(s)	260, 348, 412, 680, 681
BmeT110I	CYCGRG	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	3 cut(s)	174, 257, 880
BmrFI	CCNGG	5 cut(s)	260, 348, 412, 680, 681
BmsI	GCATC	5 cut(s)	180, 214, 236, 360, 766
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
Bpu1102I	GCTNAGC	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	787
BpuMI	CCSGG	5 cut(s)	260, 348, 412, 680, 681
BsaHI	GRCGYC	2 cut(s)	684, 702
BsaJI	CCNNGG	3 cut(s)	168, 679, 690
BsaWI	WCCGGW	2 cut(s)	85, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	470, 802, 855
Bse118I	RCCGGY	1 cut(s)	795
Bse1I	ACTGG	1 cut(s)	702
Bse3DI	GCAATG	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	168, 679, 690
BseGI	GGATG	3 cut(s)	195, 224, 913
BseLI	CCNNNNNNNGG	3 cut(s)	470, 802, 855
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	71, 726
BseNI	ACTGG	1 cut(s)	702
BseXI	GCAGC	2 cut(s)	766, 771
BshFI	GGCC	2 cut(s)	391, 762
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	679
BsiSI	CCGG	7 cut(s)	86, 260, 348, 411, 609, 680, 796
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	470, 802, 855
BsmAI	GTCTC	3 cut(s)	361, 436, 590
BsmBI	CGTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	391, 762
BsoBI	CYCGRG	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	529, 637, 770
Bsp1720I	GCTNAGC	1 cut(s)	712
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	7 cut(s)	20, 72, 252, 263, 468, 740, 912
BspANI	GGCC	2 cut(s)	391, 762
BspCNI	CTCAG	2 cut(s)	72, 725
BspHI	TCATGA	1 cut(s)	843
BspLI	GGNNCC	3 cut(s)	174, 257, 880
BspMI	ACCTGC	2 cut(s)	391, 461
BspPI	GGATC	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	795
BsrI	ACTGG	1 cut(s)	702
BssAI	RCCGGY	1 cut(s)	795
BssECI	CCNNGG	3 cut(s)	168, 679, 690
BssMI	GATC	3 cut(s)	529, 637, 770
BssNI	GRCGYC	2 cut(s)	684, 702
BssSI	CACGAG	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	897
Bst4CI	ACNGT	2 cut(s)	206, 287
Bst6I	CTCTTC	2 cut(s)	39, 897
BstACI	GRCGYC	2 cut(s)	684, 702
BstDEI	CTNAG	2 cut(s)	80, 712
BstDSI	CCRYGG	2 cut(s)	168, 690
BstF5I	GGATG	3 cut(s)	195, 224, 913
BstHHI	GCGC	2 cut(s)	582, 784
BstKTI	GATC	3 cut(s)	532, 640, 773
BstMAI	GTCTC	3 cut(s)	361, 436, 590
BstMBI	GATC	3 cut(s)	529, 637, 770
BstMWI	GCNNNNNNNGC	3 cut(s)	397, 579, 701
BstSCI	CCNGG	5 cut(s)	258, 346, 410, 678, 679
BstV1I	GCAGC	2 cut(s)	766, 771
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	391, 762
BtgI	CCRYGG	2 cut(s)	168, 690
BtsCI	GGATG	3 cut(s)	195, 224, 913
BtsIMutI	CAGTG	2 cut(s)	695, 789
BveI	ACCTGC	2 cut(s)	391, 461
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	1 cut(s)	843
CfoI	GCGC	2 cut(s)	582, 784
Cfr10I	RCCGGY	1 cut(s)	795
Cfr13I	GGNCC	1 cut(s)	390
Cfr9I	CCCGGG	1 cut(s)	679
CseI	GACGC	2 cut(s)	673, 710
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	7 cut(s)	68, 141, 169, 200, 360, 394, 844
DdeI	CTNAG	2 cut(s)	80, 712
DpnI	GATC	3 cut(s)	531, 639, 772
DpnII	GATC	3 cut(s)	529, 637, 770
Eam1104I	CTCTTC	2 cut(s)	39, 897
EarI	CTCTTC	2 cut(s)	39, 897
EciI	GGCGGA	2 cut(s)	278, 927
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	679
EcoRI	GAATTC	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	7 cut(s)	71, 144, 172, 203, 363, 397, 847
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	7 cut(s)	67, 140, 168, 199, 359, 393, 843
FauI	CCCGC	2 cut(s)	245, 733
Fnu4HI	GCNGC	2 cut(s)	780, 785
FokI	GGATG	3 cut(s)	202, 231, 920
Fsp4HI	GCNGC	2 cut(s)	780, 785
FspBI	CTAG	2 cut(s)	9, 239
FspI	TGCGCA	1 cut(s)	581
GlaI	GCGC	2 cut(s)	581, 783
GluI	GCNGC	2 cut(s)	780, 785
HaeIII	GGCC	2 cut(s)	391, 762
HapII	CCGG	7 cut(s)	86, 260, 348, 411, 609, 680, 796
HgaI	GACGC	2 cut(s)	673, 710
HhaI	GCGC	2 cut(s)	582, 784
Hin1I	GRCGYC	2 cut(s)	684, 702
Hin1II	CATG	7 cut(s)	71, 144, 172, 203, 363, 397, 847
Hin6I	GCGC	2 cut(s)	580, 782
HinP1I	GCGC	2 cut(s)	580, 782
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	82, 242, 888
HpaII	CCGG	7 cut(s)	86, 260, 348, 411, 609, 680, 796
HphI	GGTGA	2 cut(s)	475, 629
Hpy188I	TCNGA	2 cut(s)	445, 775
Hpy188III	TCNNGA	4 cut(s)	641, 658, 766, 844
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	2 cut(s)	262, 381
HpyCH4III	ACNGT	2 cut(s)	206, 287
HpyCH4IV	ACGT	3 cut(s)	51, 603, 820
HpyCH4V	TGCA	5 cut(s)	155, 193, 227, 476, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	397, 579, 701
HpyF3I	CTNAG	2 cut(s)	80, 712
HpySE526I	ACGT	3 cut(s)	51, 603, 820
Hsp92I	GRCGYC	2 cut(s)	684, 702
Hsp92II	CATG	7 cut(s)	71, 144, 172, 203, 363, 397, 847
HspAI	GCGC	2 cut(s)	580, 782
Kzo9I	GATC	3 cut(s)	529, 637, 770
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	2 cut(s)	766, 771
LweI	GCATC	5 cut(s)	180, 214, 236, 360, 766
MaeI	CTAG	2 cut(s)	9, 239
MaeII	ACGT	3 cut(s)	51, 603, 820
MaeIII	GTNAC	2 cut(s)	604, 617
MalI	GATC	3 cut(s)	531, 639, 772
MboI	GATC	3 cut(s)	529, 637, 770
MboII	GAAGA	4 cut(s)	26, 29, 880, 914
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	6 cut(s)	114, 160, 500, 562, 859, 928
MlyI	GAGTC	2 cut(s)	91, 897
MnlI	CCTC	9 cut(s)	120, 123, 290, 298, 439, 475, 741, 773, 898
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	2 cut(s)	72, 198
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	7 cut(s)	86, 260, 348, 411, 609, 680, 796
MspR9I	CCNGG	5 cut(s)	260, 348, 412, 680, 681
MunI	CAATTG	1 cut(s)	562
MwoI	GCNNNNNNNGC	3 cut(s)	397, 579, 701
NciI	CCSGG	5 cut(s)	260, 348, 412, 680, 681
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	529, 637, 770
NlaIII	CATG	7 cut(s)	71, 144, 172, 203, 363, 397, 847
NlaIV	GGNNCC	3 cut(s)	174, 257, 880
NmuCI	GTSAC	1 cut(s)	617
NsbI	TGCGCA	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	229
PagI	TCATGA	1 cut(s)	843
PaqCI	CACCTGC	1 cut(s)	461
PceI	AGGCCT	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 654
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	781, 786
PleI	GAGTC	2 cut(s)	90, 896
PpsI	GAGTC	2 cut(s)	90, 896
PspN4I	GGNNCC	3 cut(s)	174, 257, 880
PspPI	GGNCC	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	529
RseI	CAYNNNNRTG	2 cut(s)	72, 198
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	780, 785
Sau3AI	GATC	3 cut(s)	529, 637, 770
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	2 cut(s)	91, 897
ScrFI	CCNGG	5 cut(s)	260, 348, 412, 680, 681
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	5 cut(s)	180, 214, 236, 360, 766
SmaI	CCCGGG	1 cut(s)	681
SmiMI	CAYNNNNRTG	2 cut(s)	72, 198
SmlI	CTYRAG	1 cut(s)	766
SmoI	CTYRAG	1 cut(s)	766
Sse9I	AATT	6 cut(s)	114, 160, 500, 562, 859, 928
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	7 cut(s)	20, 72, 252, 263, 468, 740, 912
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	9, 239
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	5 cut(s)	258, 346, 410, 678, 679
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	206, 287
TaiI	ACGT	3 cut(s)	54, 606, 823
TasI	AATT	6 cut(s)	114, 160, 500, 562, 859, 928
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	2 cut(s)	702, 796
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	2 cut(s)	779, 784
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	5 cut(s)	17, 111, 330, 832, 881
TspGWI	ACGGA	1 cut(s)	202
TspMI	CCCGGG	1 cut(s)	679
TspRI	CASTG	2 cut(s)	702, 796
XapI	RAATTY	2 cut(s)	160, 859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XmaI	CCCGGG	1 cut(s)	679
XspI	CTAG	2 cut(s)	9, 239
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.