Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014605

Physical Location & Seq

Genomic Coordinates Reverse (-)

42920818 .. 42922350

Gene Structure 1533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG224900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGGGCAAACGTAAACGTTGTGTTGGTTTCTCTTCTTGTTTTTTTAGCTATTAGTTCTTGTAATGGAGGTCAGCTGAGTCCGGTGTTCTACCGCAAGAGTTGCCCGCAACTTGGAAGAATAGTGAGGAACATTACATGGATCAAAGTTGCAGCAAACCCTACCTTCGCAGCTAAGCTTCTACGGCTGCATTACCATGATTGCTTTGTCCAGGGATGTGATGCATCGCTATTGATAGATTCAACGGACGGCAACACGGCGGAGAAGGATGCAAGACCAAACCGGTCGATTGAAGGTTATGAAGTTATTGACGAAATAAAAGCCAAATTAGAAGAAGAGTGTCCCGATATCGTCTCGTGTGCTGATATAGTTGCTTTGGCAGCCAGAGATGCTGTTTCTTACCAATTTGGCAGGCCCATGTGGCAGGTTTTTGGAGGGAGGAAAGATGGAAGAGTTTCACTTGCCGCGGAGGCTGCAAGGGACTTGCCTTCCGGAGGTGCAAACTACACCACACTCCAAGACCAATTTGCTGGTTTAGGGCTAAACTACATAGATCTTGTTGCCTTATCAGGGGCGCATACCATCGGAGTAGCACATTGCGTAGTATTTGCAAGGAGACTGAACTTCACAGGAAAAGGGGACATAGACCCCTCACTTGATCCAGCATATGCAGAGTTCTTGAAAACACAATGCCCCAGCAGACCTAATCCGGCTACCACCGTAGAGCTTGACGAAAATAGCTCACTTTCTTTCGACAGCAACTACTATGTGGGTCTGAGGCAGAACAAAGGCCTGCTCGGATCAGATGCTGCCCTGCTCACTGACCGGCGGGCGGCTTGGGTTGCAAGAAGATTCCAAAATTTCCATGTCTTCATGGCTCGCTTTGGCAAGTCAATGATGAAAATGGGTGACATTGGAATCAAAACAGGAGGTGATGGAGAGATTAGGAAGAATTGCAGAGTTATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

323

Amino Acids

35.31

Weight (kDa)

8.33

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	48 - 286	1.7e-78	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39040
fragaria_vesca	FvH4_4g16970
malus_domestica	MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica	Prupe.1G143900_v2.0.a1
pyrus_communis	pycom13g15120
rosa_chinensis	RchiOBHm_Chr4g0420641
rosa_laevigata	RLG00000007745
rosa_multiflora	Rmu_sc0011080.1_g000008
rosa_roxburghii	Rroxscaffold_5G00363180
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana	Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccII	CGCG	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	7 cut(s)	94, 107, 260, 465, 467, 829, 833
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	3 cut(s)	149, 653, 808
AcsI	RAATTY	1 cut(s)	859
AfiI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	243, 293, 682
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	6 cut(s)	50, 76, 173, 178, 727, 741
AluI	AGCT	6 cut(s)	50, 76, 173, 178, 727, 741
Alw26I	GTCTC	2 cut(s)	358, 610
AlwI	GGATC	3 cut(s)	149, 653, 808
AlwNI	CAGNNNCTG	1 cut(s)	809
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	2 cut(s)	413, 790
ApeKI	GCWGC	6 cut(s)	152, 170, 187, 380, 473, 809
ApoI	RAATTY	1 cut(s)	859
AseI	ATTAAT	1 cut(s)	966
AsiGI	ACCGGT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	920, 944
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	862
BbvI	GCAGC	6 cut(s)	164, 174, 182, 392, 460, 796
BccI	CCATC	3 cut(s)	440, 590, 929
BceAI	ACGGC	3 cut(s)	200, 265, 273
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	358, 610
BfuAI	ACCTGC	1 cut(s)	415
BglI	GCCNNNNNGGC	2 cut(s)	421, 470
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	8 cut(s)	153, 171, 188, 381, 465, 474, 810, 834
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	8 cut(s)	154, 172, 189, 382, 466, 475, 811, 835
Bme1390I	CCNGG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	5 cut(s)	211, 233, 259, 379, 796
BpiI	GAAGAC	1 cut(s)	862
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	211, 465
BsaWI	WCCGGW	3 cut(s)	82, 282, 491
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
Bse118I	RCCGGY	2 cut(s)	282, 825
Bse3DI	GCAATG	1 cut(s)	595
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	211, 465
BseGI	GGATG	2 cut(s)	221, 274
BseLI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	68, 767
BseXI	GCAGC	6 cut(s)	164, 174, 182, 392, 460, 796
BseYI	CCCAGC	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	415, 792
BshTI	ACCGGT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	287
BsiSI	CCGG	5 cut(s)	83, 283, 492, 710, 826
BslFI	GGGAC	3 cut(s)	327, 494, 653
BslI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
BsmAI	GTCTC	2 cut(s)	358, 610
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	3 cut(s)	327, 494, 653
BsnI	GGCC	2 cut(s)	415, 792
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	4 cut(s)	141, 553, 658, 800
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	7 cut(s)	94, 107, 260, 465, 467, 829, 833
BspANI	GGCC	2 cut(s)	415, 792
BspCNI	CTCAG	2 cut(s)	69, 768
BspEI	TCCGGA	1 cut(s)	491
BspFNI	CGCG	1 cut(s)	467
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	3 cut(s)	149, 653, 808
BsrDI	GCAATG	1 cut(s)	595
BsrFI	RCCGGY	2 cut(s)	282, 825
BssAI	RCCGGY	2 cut(s)	282, 825
BssECI	CCNNGG	2 cut(s)	211, 465
BssMI	GATC	4 cut(s)	141, 553, 658, 800
BssSI	CACGAG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	3 cut(s)	39, 330, 445
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	5 cut(s)	107, 413, 794, 831, 880
BstDEI	CTNAG	3 cut(s)	77, 174, 776
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	221, 274
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	4 cut(s)	144, 556, 661, 803
BstMAI	GTCTC	2 cut(s)	358, 610
BstMBI	GATC	4 cut(s)	141, 553, 658, 800
BstMCI	CGRYCG	1 cut(s)	287
BstMWI	GCNNNNNNNGC	8 cut(s)	102, 184, 380, 389, 421, 470, 473, 842
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	6 cut(s)	164, 174, 182, 392, 460, 796
BstV2I	GAAGAC	1 cut(s)	862
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	415, 792
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	221, 274
BtsIMutI	CAGTG	1 cut(s)	819
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	107, 413, 794, 831, 880
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	2 cut(s)	282, 825
Cfr13I	GGNCC	1 cut(s)	414
Cfr42I	CCGCGG	1 cut(s)	468
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	5 cut(s)	138, 197, 418, 866, 874
DdeI	CTNAG	3 cut(s)	77, 174, 776
DpnI	GATC	4 cut(s)	143, 555, 660, 802
DpnII	GATC	4 cut(s)	141, 553, 658, 800
Eam1104I	CTCTTC	3 cut(s)	39, 330, 445
EarI	CTCTTC	3 cut(s)	39, 330, 445
EciI	GGCGGA	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	792
Eco32I	GATATC	1 cut(s)	349
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	5 cut(s)	141, 200, 421, 869, 877
FaqI	GGGAC	3 cut(s)	327, 494, 653
FatI	CATG	5 cut(s)	137, 196, 417, 865, 873
FauI	CCCGC	2 cut(s)	114, 822
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	8 cut(s)	153, 171, 188, 381, 465, 474, 810, 834
FokI	GGATG	2 cut(s)	228, 281
Fsp4HI	GCNGC	8 cut(s)	153, 171, 188, 381, 465, 474, 810, 834
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	8 cut(s)	153, 171, 188, 381, 465, 474, 810, 834
GsaI	CCCAGC	1 cut(s)	699
HaeIII	GGCC	2 cut(s)	415, 792
HapII	CCGG	5 cut(s)	83, 283, 492, 710, 826
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	5 cut(s)	141, 200, 421, 869, 877
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	79, 239, 852, 918
HpaII	CCGG	5 cut(s)	83, 283, 492, 710, 826
HphI	GGTGA	2 cut(s)	920, 944
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	587, 777, 800, 805
Hpy188III	TCNNGA	3 cut(s)	344, 492, 679
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	175, 259, 287, 498
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	12, 18
HpyF10VI	GCNNNNNNNGC	8 cut(s)	102, 184, 380, 389, 421, 470, 473, 842
HpyF3I	CTNAG	3 cut(s)	77, 174, 776
HpySE526I	ACGT	2 cut(s)	12, 18
Hsp92II	CATG	5 cut(s)	141, 200, 421, 869, 877
HspAI	GCGC	1 cut(s)	575
Kpn2I	TCCGGA	1 cut(s)	491
KspI	CCGCGG	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	141, 553, 658, 800
Lsp1109I	GCAGC	6 cut(s)	164, 174, 182, 392, 460, 796
LweI	GCATC	5 cut(s)	211, 233, 259, 379, 796
MaeII	ACGT	2 cut(s)	12, 18
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	4 cut(s)	143, 555, 660, 802
MboI	GATC	4 cut(s)	141, 553, 658, 800
MboII	GAAGA	8 cut(s)	26, 129, 344, 347, 462, 861, 862, 961
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	6 cut(s)	326, 404, 524, 859, 952, 967
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	62, 120, 428, 432, 463, 488, 661, 771, 923
Mph1103I	ATGCAT	1 cut(s)	226
MroI	TCCGGA	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	454
MseI	TTAA	2 cut(s)	966, 970
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	76, 467
MspI	CCGG	5 cut(s)	83, 283, 492, 710, 826
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	8 cut(s)	102, 184, 380, 389, 421, 470, 473, 842
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	4 cut(s)	141, 553, 658, 800
NlaIII	CATG	5 cut(s)	141, 200, 421, 869, 877
NmuCI	GTSAC	1 cut(s)	908
NsiI	ATGCAT	1 cut(s)	226
PacI	TTAATTAA	1 cut(s)	970
PceI	AGGCCT	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	3 cut(s)	239, 852, 918
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	8 cut(s)	154, 172, 189, 382, 466, 475, 811, 835
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	966
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	195
SacII	CCGCGG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	966, 970
SatI	GCNGC	8 cut(s)	153, 171, 188, 381, 465, 474, 810, 834
Sau3AI	GATC	4 cut(s)	141, 553, 658, 800
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	212
SfaNI	GCATC	5 cut(s)	211, 233, 259, 379, 796
Sfr303I	CCGCGG	1 cut(s)	468
SgrBI	CCGCGG	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	6 cut(s)	326, 404, 524, 859, 952, 967
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	7 cut(s)	94, 107, 260, 465, 467, 829, 833
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	15, 21
TaqI	TCGA	2 cut(s)	287, 753
TasI	AATT	6 cut(s)	326, 404, 524, 859, 952, 967
TauI	GCSGC	2 cut(s)	467, 836
TfiI	GAWTC	3 cut(s)	239, 852, 918
Tru1I	TTAA	2 cut(s)	966, 970
Tru9I	TTAA	2 cut(s)	966, 970
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	6 cut(s)	152, 170, 187, 380, 473, 809
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	3 cut(s)	315, 862, 914
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	826
VspI	ATTAAT	1 cut(s)	966
XagI	CCTNNNNNAGG	1 cut(s)	492
XapI	RAATTY	1 cut(s)	859
XmnI	GAANNNNTTC	1 cut(s)	454
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.