Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014605

Physical Location & Seq

Genomic Coordinates Reverse (-)

43056264 .. 43071275

Gene Structure 15012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G019610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAGGGCAAACGTAAACGTTGTGTTGGTTTCTCTTCTTGTTTTTTTAGCTGTTAATTCTTGTAATGGAGGTCAGCTGAGTCCTGTGTTCTACCGCAAGAGTTGCCCGCAACTTGAAAGAATAGTGAGGAACATTACATGGAGCAAAGTTGCAGCAAACCCTACCTTCGCAGCTAAGCTTCTACGGCTGCATTACCATGATTGCTTTGTCCAGGGATGTGATGCATCGCTATTGATAGATTCAACGGACGGCAACACGGCGGAGAAGGATGGTTATGAAGTTATTGACGAAATAAAAGCCAAATTAGAAGAGGAATTAAATATTTACATAATATTCTACATCTCGTGTGCTGATATAGTTGCTTTGGCAGCCAGAGGTGCTGTTTCTTACCAATTTGGCAGGTCCATGTGGCAGGTTTTTGGAGGGAGGAAAGATGGAAGAGTTTCAGTTGTCGCGGAGGCTGCAAGGGACTTGCCTTCCGGAGGTGCAAACTACACCACACTCCAAGACCAATTTGCTGGTTTAGGGCTAAACTACATAGATCTTGTTGCCTTATCAGTAGCATATTGCGTAGTATTTGCAAGGAGACCGAACTTCACAGGAAAAGGGGACATAGACCCCTCACTTGATCCAGCATATGCAGAGTTCCTGAAAACACAATGCCCCAGCAGACCTAATCTGCTACGACTGCCTACTTTCGACAGTGACTACTATGTGGGTCTGAGGCAGAACAAAGGCCTACTCGGATCAGATGCTGCCAGGGGCGGATCTACATATCCGTCCAATGGTTCAATCCTGGATCCGCCCCTGGATGCTGCCCTGCTCACTAACTGGCGGGCGGCTTGGGTTGCAAGAAGATTCCAAAATTTCCATGTCTTCTTGGCTCGCTTTGGTAAGTCAATGATGAAAATTGGTGACATTGGAATCCAAACAGGAGATGATGGAGAAATTAGGAAGAATTGCAGAGTTATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

325

Amino Acids

35.76

Weight (kDa)

8.35

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 254	9.2e-47	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39040
fragaria_vesca	FvH4_4g16970
malus_domestica	MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica	Prupe.1G143900_v2.0.a1
pyrus_communis	pycom13g15120
rosa_chinensis	RchiOBHm_Chr4g0420641
rosa_laevigata	RLG00000007745
rosa_multiflora	Rmu_sc0011080.1_g000008
rosa_roxburghii	Rroxscaffold_5G00363180
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana	Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	390, 403
AccII	CGCG	1 cut(s)	455
AccIII	TCCGGA	1 cut(s)	479
AciI	CCGC	8 cut(s)	94, 107, 260, 455, 765, 803, 835, 839
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	5 cut(s)	623, 754, 775, 794, 807
AcsI	RAATTY	1 cut(s)	865
AfiI	CCNNNNNNNGG	2 cut(s)	482, 785
AgsI	TTSAA	3 cut(s)	116, 243, 792
AjnI	CCWGG	4 cut(s)	210, 758, 795, 807
AluBI	AGCT	4 cut(s)	50, 76, 173, 178
AluI	AGCT	4 cut(s)	50, 76, 173, 178
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	5 cut(s)	623, 754, 775, 794, 807
AlwNI	CAGNNNCTG	1 cut(s)	755
Aor13HI	TCCGGA	1 cut(s)	479
AoxI	GGCC	1 cut(s)	736
ApeKI	GCWGC	7 cut(s)	152, 170, 187, 368, 461, 755, 815
ApoI	RAATTY	1 cut(s)	865
AseI	ATTAAT	1 cut(s)	972
Asp700I	GAANNNNTTC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	799
BauI	CACGAG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	868
BbvI	GCAGC	7 cut(s)	164, 174, 182, 380, 448, 742, 802
BccI	CCATC	3 cut(s)	263, 428, 935
BceAI	ACGGC	3 cut(s)	200, 265, 273
BciT130I	CCWGG	4 cut(s)	212, 760, 797, 809
BcoDI	GTCTC	1 cut(s)	580
BfuAI	ACCTGC	2 cut(s)	390, 403
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	8 cut(s)	153, 171, 188, 369, 462, 756, 816, 840
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	8 cut(s)	154, 172, 189, 370, 463, 757, 817, 841
Bme1390I	CCNGG	4 cut(s)	212, 760, 797, 809
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	801
BmrFI	CCNGG	4 cut(s)	212, 760, 797, 809
BmsI	GCATC	4 cut(s)	211, 233, 742, 802
BpiI	GAAGAC	1 cut(s)	868
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	580
BsaJI	CCNNGG	3 cut(s)	211, 759, 807
BsaWI	WCCGGW	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 785
Bse1I	ACTGG	1 cut(s)	836
BseAI	TCCGGA	1 cut(s)	479
BseBI	CCWGG	4 cut(s)	212, 760, 797, 809
BseDI	CCNNGG	3 cut(s)	211, 759, 807
BseGI	GGATG	3 cut(s)	221, 274, 817
BseLI	CCNNNNNNNGG	2 cut(s)	482, 785
BseMII	CTCAG	2 cut(s)	68, 713
BseNI	ACTGG	1 cut(s)	836
BseXI	GCAGC	7 cut(s)	164, 174, 182, 380, 448, 742, 802
BseYI	CCCAGC	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	2 cut(s)	482, 623
BslI	CCNNNNNNNGG	2 cut(s)	482, 785
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	2 cut(s)	482, 623
BsnI	GGCC	1 cut(s)	738
Bso31I	GGTCTC	1 cut(s)	580
Bsp13I	TCCGGA	1 cut(s)	479
Bsp143I	GATC	5 cut(s)	541, 628, 746, 767, 799
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	8 cut(s)	94, 107, 260, 455, 765, 803, 835, 839
BspANI	GGCC	1 cut(s)	738
BspCNI	CTCAG	2 cut(s)	69, 714
BspEI	TCCGGA	1 cut(s)	479
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	1 cut(s)	801
BspMI	ACCTGC	2 cut(s)	390, 403
BspPI	GGATC	5 cut(s)	623, 754, 775, 794, 807
BspTNI	GGTCTC	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	836
BssECI	CCNNGG	3 cut(s)	211, 759, 807
BssMI	GATC	5 cut(s)	541, 628, 746, 767, 799
BssSI	CACGAG	1 cut(s)	343
Bst2BI	CACGAG	1 cut(s)	343
Bst2UI	CCWGG	4 cut(s)	212, 760, 797, 809
Bst4CI	ACNGT	1 cut(s)	704
Bst6I	CTCTTC	3 cut(s)	39, 303, 433
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	107, 837, 886
BstDEI	CTNAG	3 cut(s)	77, 174, 722
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	3 cut(s)	221, 274, 817
BstFNI	CGCG	1 cut(s)	455
BstKTI	GATC	5 cut(s)	544, 631, 749, 770, 802
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	5 cut(s)	541, 628, 746, 767, 799
BstMWI	GCNNNNNNNGC	7 cut(s)	102, 184, 368, 377, 461, 688, 848
BstNI	CCWGG	4 cut(s)	212, 760, 797, 809
BstSCI	CCNGG	4 cut(s)	210, 758, 795, 807
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	7 cut(s)	164, 174, 182, 380, 448, 742, 802
BstV2I	GAAGAC	1 cut(s)	868
BstX2I	RGATCY	3 cut(s)	541, 767, 799
BstXI	CCANNNNNNTGG	1 cut(s)	518
BstYI	RGATCY	3 cut(s)	541, 767, 799
BsuRI	GGCC	1 cut(s)	738
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	221, 274, 817
BtsIMutI	CAGTG	1 cut(s)	709
BveI	ACCTGC	2 cut(s)	390, 403
Cac8I	GCNNGC	3 cut(s)	107, 837, 886
CaiI	CAGNNNCTG	1 cut(s)	755
Cfr13I	GGNCC	1 cut(s)	402
CviAII	CATG	4 cut(s)	138, 197, 406, 872
DdeI	CTNAG	3 cut(s)	77, 174, 722
DpnI	GATC	5 cut(s)	543, 630, 748, 769, 801
DpnII	GATC	5 cut(s)	541, 628, 746, 767, 799
Eam1104I	CTCTTC	3 cut(s)	39, 303, 433
EarI	CTCTTC	3 cut(s)	39, 303, 433
EciI	GGCGGA	3 cut(s)	275, 780, 792
Eco147I	AGGCCT	1 cut(s)	738
Eco31I	GGTCTC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	402
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoRII	CCWGG	4 cut(s)	210, 758, 795, 807
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	4 cut(s)	141, 200, 409, 875
FaqI	GGGAC	2 cut(s)	482, 623
FatI	CATG	4 cut(s)	137, 196, 405, 871
FauI	CCCGC	2 cut(s)	114, 828
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	8 cut(s)	153, 171, 188, 369, 462, 756, 816, 840
FokI	GGATG	3 cut(s)	228, 281, 824
Fsp4HI	GCNGC	8 cut(s)	153, 171, 188, 369, 462, 756, 816, 840
GluI	GCNGC	8 cut(s)	153, 171, 188, 369, 462, 756, 816, 840
GsaI	CCCAGC	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	738
HapII	CCGG	1 cut(s)	480
Hin1II	CATG	4 cut(s)	141, 200, 409, 875
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	79, 239, 858, 924
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	926
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	723, 746, 751
Hpy188III	TCNNGA	2 cut(s)	480, 649
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	175, 259, 486
HpyCH4III	ACNGT	1 cut(s)	704
HpyCH4IV	ACGT	2 cut(s)	12, 18
HpyCH4V	TGCA	9 cut(s)	152, 190, 224, 464, 488, 581, 641, 851, 963
HpyF10VI	GCNNNNNNNGC	7 cut(s)	102, 184, 368, 377, 461, 688, 848
HpyF3I	CTNAG	3 cut(s)	77, 174, 722
HpySE526I	ACGT	2 cut(s)	12, 18
Hsp92II	CATG	4 cut(s)	141, 200, 409, 875
Kpn2I	TCCGGA	1 cut(s)	479
Kzo9I	GATC	5 cut(s)	541, 628, 746, 767, 799
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	7 cut(s)	164, 174, 182, 380, 448, 742, 802
LweI	GCATC	4 cut(s)	211, 233, 742, 802
MaeII	ACGT	2 cut(s)	12, 18
MaeIII	GTNAC	2 cut(s)	704, 914
MalI	GATC	5 cut(s)	543, 630, 748, 769, 801
MboI	GATC	5 cut(s)	541, 628, 746, 767, 799
MboII	GAAGA	6 cut(s)	26, 320, 450, 867, 868, 967
MflI	RGATCY	3 cut(s)	541, 767, 799
MlyI	GAGTC	1 cut(s)	88
Mph1103I	ATGCAT	1 cut(s)	226
MroI	TCCGGA	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	4 cut(s)	54, 317, 972, 976
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	4 cut(s)	212, 760, 797, 809
MvaI	CCWGG	4 cut(s)	212, 760, 797, 809
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	7 cut(s)	102, 184, 368, 377, 461, 688, 848
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	5 cut(s)	541, 628, 746, 767, 799
NlaIII	CATG	4 cut(s)	141, 200, 409, 875
NlaIV	GGNNCC	1 cut(s)	801
NmuCI	GTSAC	2 cut(s)	704, 914
NsiI	ATGCAT	1 cut(s)	226
PacI	TTAATTAA	1 cut(s)	976
PceI	AGGCCT	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	3 cut(s)	239, 858, 924
PfoI	TCCNGGA	1 cut(s)	795
PkrI	GCNGC	8 cut(s)	154, 172, 189, 370, 463, 757, 817, 841
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	972
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	4 cut(s)	210, 758, 795, 807
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	4 cut(s)	210, 758, 795, 807
PspN4I	GGNNCC	1 cut(s)	801
PspPI	GGNCC	1 cut(s)	402
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	3 cut(s)	541, 767, 799
PvuII	CAGCTG	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	4 cut(s)	54, 317, 972, 976
SatI	GCNGC	8 cut(s)	153, 171, 188, 369, 462, 756, 816, 840
Sau3AI	GATC	5 cut(s)	541, 628, 746, 767, 799
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	4 cut(s)	212, 760, 797, 809
SfaNI	GCATC	4 cut(s)	211, 233, 742, 802
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	195
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	8 cut(s)	94, 107, 260, 455, 765, 803, 835, 839
SspI	AATATT	2 cut(s)	322, 333
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	4 cut(s)	210, 758, 795, 807
TaaI	ACNGT	1 cut(s)	704
TaiI	ACGT	2 cut(s)	15, 21
TaqI	TCGA	1 cut(s)	699
TaqII	GACCGA	1 cut(s)	604
TauI	GCSGC	1 cut(s)	842
TfiI	GAWTC	3 cut(s)	239, 858, 924
Tru1I	TTAA	4 cut(s)	54, 317, 972, 976
Tru9I	TTAA	4 cut(s)	54, 317, 972, 976
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	2 cut(s)	704, 914
TseI	GCWGC	7 cut(s)	152, 170, 187, 368, 461, 755, 815
Tsp45I	GTSAC	2 cut(s)	704, 914
TspDTI	ATGAA	2 cut(s)	291, 920
TspGWI	ACGGA	2 cut(s)	260, 768
TspRI	CASTG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	402
VspI	ATTAAT	1 cut(s)	972
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	865
XmnI	GAANNNNTTC	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.