FvH4_4g16970

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014605
Physical Location & Seq
Reverse (-)
20889809 .. 20891645
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16970.t1

Sequence Viewer

Length: 984 bp
ATGATGGCAAACGTAAAAGTTGTGCTGGTTTCTCTTCTTGTGTTTGTAGCTATTAGTTCTTGTAATGGAGGTCATGATCAGCTGAGTCCATGGTTCTATCGCAAGAGTTGCCAGCAATTTGAAAATATAGTGAGGAGCATTACATGGAGCAAAGTTGCAGCTAACCCTAACTTCGCGGCCAAGCTTCTAAGGCTGCATTACCATGATTGCTTTGTCCAGGGATGTGATGCATCGATACTGATAGATTCAACGGACGGCAACACGGCGGAGAAGGATGCAAGACCTAACCGGTCAGTTGAAGGTTATGAAATTATTGACGAAATAAAAGCCAAATTAGAAGAAGAGTGTCCCGATACCGTCTCGTGTGCTGATATTGTTGCTTTAGCAGCCAGAGATGCTGTTTCTTACCAATTTGGAAGGTCGATGTGGCTGGTATTTGGAGGGAGGAAAGATGGCAGAGTTTCACTTGCTACAGAGGCTACAAGAGACTTGCCTTCCGGAGGTGCAAACTACACCACACTCCGAGACCAATTTGCTGGTTTAGGGCTAAACTACATAGATCTTGTTGCCTTATCAGGGGCGCATACCCTCGGAGTAGCACACTGCGTGGTATTTGCAAGGAGACTGAACTTCACAGGAAAAGGGGACATAGACCCTTCACTTGATCCAGCATATGCAGAGTTCTTGAAAACACAGTGCCCCAGCAGTACTCCTAATCCGGCCACCACCGTTGAGCTTGACGAAAGTAGCTCAATCTCCTTCGACAGCCACTACTTTGTGGGTCTGAGGCACAAAAAAGGCCTGCTCGGATCAGATGCTGCCCTACTCACTGACCGGCGGGCGGCTTGGGTTGCAAGAAGCTTCCAAAATTTCCATGTCTTCATGGCTCACTTCGGTCAGTCGATGAAGAAAATGGGTGACATTGGAATCAAAACAGGAAATGATGGAGAAATTAGGAAGAATTGCCGAGTTATTAATGCTTAG

Protein Analysis

328

Amino Acids

35.8

Weight (kDa)

6.75

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 289 5.8e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39040
fragaria_vesca FvH4_4g16970
malus_domestica MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica Prupe.1G143900_v2.0.a1
pyrus_communis pycom13g15120
rosa_chinensis RchiOBHm_Chr4g0420641
rosa_laevigata RLG00000007745
rosa_multiflora Rmu_sc0011080.1_g000008
rosa_roxburghii Rroxscaffold_5G00363180
rosa_rugosa Rorug04G0165100
rosa_samantha Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 176
AccIII TCCGGA 1 cut(s) 497
AciI CCGC 4 cut(s) 176, 266, 838, 842
AclWI GGATC 2 cut(s) 659, 817
AcoI YGGCCR 2 cut(s) 177, 720
AcsI RAATTY 1 cut(s) 868
AdeI CACNNNGTG 1 cut(s) 607
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 3 cut(s) 500, 576, 841
AgeI ACCGGT 1 cut(s) 288
AgsI TTSAA 4 cut(s) 122, 249, 299, 688
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 7 cut(s) 50, 82, 161, 184, 736, 750, 861
AluI AGCT 7 cut(s) 50, 82, 161, 184, 736, 750, 861
Alw26I GTCTC 4 cut(s) 364, 480, 519, 616
AlwI GGATC 2 cut(s) 659, 817
AlwNI CAGNNNCTG 1 cut(s) 818
Aor13HI TCCGGA 1 cut(s) 497
AoxI GGCC 3 cut(s) 177, 720, 799
ApeKI GCWGC 4 cut(s) 158, 193, 386, 818
ApoI RAATTY 1 cut(s) 868
AseI ATTAAT 1 cut(s) 975
AsiGI ACCGGT 1 cut(s) 288
AspLEI GCGC 1 cut(s) 583
AsuHPI GGTGA 1 cut(s) 929
BaeGI GKGCMC 1 cut(s) 701
BauI CACGAG 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 871
BbvI GCAGC 4 cut(s) 170, 180, 398, 805
BccI CCATC 2 cut(s) 446, 938
BceAI ACGGC 2 cut(s) 271, 279
BciT130I CCWGG 1 cut(s) 218
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 4 cut(s) 364, 480, 519, 616
BfmI CTRYAG 1 cut(s) 471
BglII AGATCT 1 cut(s) 559
BisI GCNGC 6 cut(s) 159, 177, 194, 387, 819, 843
BlsI GCNGC 6 cut(s) 160, 178, 195, 388, 820, 844
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 5 cut(s) 217, 239, 265, 385, 805
BpiI GAAGAC 1 cut(s) 871
Bsa29I ATCGAT 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 89, 217, 589
BsaWI WCCGGW 2 cut(s) 288, 497
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 576, 841
Bse118I RCCGGY 2 cut(s) 288, 834
BseAI TCCGGA 1 cut(s) 497
BseBI CCWGG 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 89, 217, 589
BseGI GGATG 2 cut(s) 227, 280
BseLI CCNNNNNNNGG 3 cut(s) 500, 576, 841
BseMII CTCAG 2 cut(s) 74, 776
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 4 cut(s) 170, 180, 398, 805
BseYI CCCAGC 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 3 cut(s) 179, 722, 801
BshTI ACCGGT 1 cut(s) 288
BshVI ATCGAT 1 cut(s) 233
BsiSI CCGG 4 cut(s) 289, 498, 719, 835
BslFI GGGAC 2 cut(s) 333, 659
BslI CCNNNNNNNGG 3 cut(s) 500, 576, 841
BsmAI GTCTC 4 cut(s) 364, 480, 519, 616
BsmBI CGTCTC 1 cut(s) 364
BsmFI GGGAC 2 cut(s) 333, 659
BsnI GGCC 3 cut(s) 179, 722, 801
Bso31I GGTCTC 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 701
Bsp13I TCCGGA 1 cut(s) 497
Bsp143I GATC 4 cut(s) 76, 559, 664, 809
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 4 cut(s) 176, 266, 838, 842
BspANI GGCC 3 cut(s) 179, 722, 801
BspCNI CTCAG 2 cut(s) 75, 777
BspDI ATCGAT 1 cut(s) 233
BspEI TCCGGA 1 cut(s) 497
BspFNI CGCG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 73
BspPI GGATC 2 cut(s) 659, 817
BspTNI GGTCTC 1 cut(s) 519
BsrFI RCCGGY 2 cut(s) 288, 834
BssAI RCCGGY 2 cut(s) 288, 834
BssECI CCNNGG 3 cut(s) 89, 217, 589
BssMI GATC 4 cut(s) 76, 559, 664, 809
BssSI CACGAG 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 358, 696, 730
Bst6I CTCTTC 2 cut(s) 39, 336
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 113, 803, 840
BstDEI CTNAG 4 cut(s) 83, 188, 785, 981
BstDSI CCRYGG 1 cut(s) 89
BstENI CCTNNNNNAGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 227, 280
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 4 cut(s) 79, 562, 667, 812
BstMAI GTCTC 4 cut(s) 364, 480, 519, 616
BstMBI GATC 4 cut(s) 76, 559, 664, 809
BstMWI GCNNNNNNNGC 6 cut(s) 108, 190, 386, 395, 476, 851
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 701
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 4 cut(s) 170, 180, 398, 805
BstV2I GAAGAC 1 cut(s) 871
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 233
BsuRI GGCC 3 cut(s) 179, 722, 801
BsuTUI ATCGAT 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 89
BtsCI GGATG 2 cut(s) 227, 280
BtsI GCAGTG 1 cut(s) 601
BtsIMutI CAGTG 3 cut(s) 601, 701, 828
Cac8I GCNNGC 3 cut(s) 113, 803, 840
CaiI CAGNNNCTG 1 cut(s) 818
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 2 cut(s) 288, 834
ClaI ATCGAT 1 cut(s) 233
Csp6I GTAC 1 cut(s) 708
CspAI ACCGGT 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 6 cut(s) 74, 90, 144, 203, 875, 883
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 4 cut(s) 83, 188, 785, 981
DpnI GATC 4 cut(s) 78, 561, 666, 811
DpnII GATC 4 cut(s) 76, 559, 664, 809
DraIII CACNNNGTG 1 cut(s) 607
EaeI YGGCCR 2 cut(s) 177, 720
Eam1104I CTCTTC 2 cut(s) 39, 336
EarI CTCTTC 2 cut(s) 39, 336
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 801
Eco31I GGTCTC 1 cut(s) 519
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 6 cut(s) 77, 93, 147, 206, 878, 886
FaqI GGGAC 2 cut(s) 333, 659
FatI CATG 6 cut(s) 73, 89, 143, 202, 874, 882
FauI CCCGC 1 cut(s) 831
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 6 cut(s) 159, 177, 194, 387, 819, 843
FokI GGATG 2 cut(s) 234, 287
Fsp4HI GCNGC 6 cut(s) 159, 177, 194, 387, 819, 843
GlaI GCGC 1 cut(s) 582
GluI GCNGC 6 cut(s) 159, 177, 194, 387, 819, 843
GsaI CCCAGC 1 cut(s) 705
HaeIII GGCC 3 cut(s) 179, 722, 801
HapII CCGG 4 cut(s) 289, 498, 719, 835
HhaI GCGC 1 cut(s) 583
Hin1II CATG 6 cut(s) 77, 93, 147, 206, 878, 886
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HindIII AAGCTT 2 cut(s) 182, 859
HinfI GANTC 3 cut(s) 85, 245, 927
HpaII CCGG 4 cut(s) 289, 498, 719, 835
HphI GGTGA 1 cut(s) 929
Hpy188I TCNGA 5 cut(s) 524, 593, 786, 809, 814
Hpy188III TCNNGA 4 cut(s) 74, 350, 498, 685
HpyAV CCTTC 6 cut(s) 265, 293, 411, 504, 666, 769
HpyCH4III ACNGT 3 cut(s) 358, 696, 730
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 8 cut(s) 158, 196, 230, 278, 506, 617, 677, 854
HpyF10VI GCNNNNNNNGC 6 cut(s) 108, 190, 386, 395, 476, 851
HpyF3I CTNAG 4 cut(s) 83, 188, 785, 981
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 6 cut(s) 77, 93, 147, 206, 878, 886
HspAI GCGC 1 cut(s) 581
Kpn2I TCCGGA 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 559, 664, 809
LmnI GCTCC 2 cut(s) 135, 147
Lsp1109I GCAGC 4 cut(s) 170, 180, 398, 805
LweI GCATC 5 cut(s) 217, 239, 265, 385, 805
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 917
MalI GATC 4 cut(s) 78, 561, 666, 811
MboI GATC 4 cut(s) 76, 559, 664, 809
MboII GAAGA 6 cut(s) 26, 350, 353, 871, 919, 970
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 8 cut(s) 116, 309, 332, 410, 530, 868, 951, 961
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 8 cut(s) 62, 126, 434, 438, 469, 494, 599, 780
Mph1103I ATGCAT 1 cut(s) 232
MroI TCCGGA 1 cut(s) 497
MseI TTAA 1 cut(s) 975
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 4 cut(s) 289, 498, 719, 835
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 6 cut(s) 108, 190, 386, 395, 476, 851
NcoI CCATGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 673
NdeII GATC 4 cut(s) 76, 559, 664, 809
NlaIII CATG 6 cut(s) 77, 93, 147, 206, 878, 886
NmuCI GTSAC 1 cut(s) 917
NsiI ATGCAT 1 cut(s) 232
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 801
PfeI GAWTC 2 cut(s) 245, 927
PinAI ACCGGT 1 cut(s) 288
PkrI GCNGC 6 cut(s) 160, 178, 195, 388, 820, 844
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PshBI ATTAAT 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 216
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 975
SatI GCNGC 6 cut(s) 159, 177, 194, 387, 819, 843
Sau3AI GATC 4 cut(s) 76, 559, 664, 809
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 5 cut(s) 217, 239, 265, 385, 805
SfcI CTRYAG 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 8 cut(s) 116, 309, 332, 410, 530, 868, 951, 961
SseBI AGGCCT 1 cut(s) 801
SsiI CCGC 4 cut(s) 176, 266, 838, 842
StuI AGGCCT 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 3 cut(s) 358, 696, 730
TaiI ACGT 1 cut(s) 15
TaqI TCGA 4 cut(s) 233, 422, 762, 902
TaqII GACCGA 1 cut(s) 884
TasI AATT 8 cut(s) 116, 309, 332, 410, 530, 868, 951, 961
TatI WGTACW 1 cut(s) 707
TauI GCSGC 2 cut(s) 179, 845
TfiI GAWTC 2 cut(s) 245, 927
Tru1I TTAA 1 cut(s) 975
Tru9I TTAA 1 cut(s) 975
TscAI CASTG 3 cut(s) 608, 701, 835
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 4 cut(s) 158, 193, 386, 818
Tsp45I GTSAC 1 cut(s) 917
TspDTI ATGAA 3 cut(s) 321, 871, 920
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 3 cut(s) 608, 701, 835
VspI ATTAAT 1 cut(s) 975
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 1 cut(s) 868
ZrmI AGTACT 1 cut(s) 709
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.