Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011080.1

Orthogroup ID

OG0014605

Physical Location & Seq

Genomic Coordinates Reverse (-)

30064 .. 33519

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011080.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atgagggcaaacgtaaacgttgtgttggtttctcttcttgtttttttagctagtagttcttgtaatggaggtcagctgagtccggtgttctaccgcaagagttgcccgcaacttggaagaatagtgaggaacattacatggatcaaagttgcagcaaaccctaccttcgcagctaagcttctacggctgcattaccatgattgctttgtccagggatgtgatgcatcgctattgatagattcaacggacggcaacacggcggagaaggatgcaagaccaaaccggtcgattgaaggttatgaagttattgacgaaataaaagccaaattagaagaagagtgtcccgatatcgtgtcgtgtgctgatatagttgctttggcagccagagatgctgtttcttaccaatttggcaggcccatgtggcaggtttttggagggaggaaagatggaagagtttcacttgccgcggaggctgcaagggacttgccttccggaggtgcaaactacaccacactccaagaccaatttgctgatttagggctaaactacatagatcttgttgccttatcaggggcgcataccatcggagtagcacattgcgtagtatttgcaaggagactgaacttcacaggaaaaggggacatagacccctcacttgatccagcatatgcagagttcttgaaaacacaatgccccagcagacctaatccggctaccaccgtagagcttgacgaaaatagctcactttctttcgacagcaactactatgtgggtctgaggcagaacaaaggcctgctcggatcagatgctgccctgctcactgaccggcgggcggcttgggttgcaagaagattccaaaatttccatgtcttcatggctcgctttggcaagtcaatgatgaaaatgggtgacattggaatcaaaacaggagatttatctcagctgtctggcgttctccaacgacgccaccaccacagacttgatcgcttcgacctcgtcgccctcccttccaagctggtttcctccgattcacactgtacatggtggatcgaacctcgatttcacagcgcggcagacccgattggaactttcatttgcagcggtggtttggctcgaaaccacatgggttttgaagctctcctcttgctgattccacccataccagccttgcaactcgatttgaagtgtggagctccgattcccaatttgaaatgtttagctttcagcggggatctacgccaaattggccttagtcccagaggtatgaaagctgttcatcttaacttgatcttcattctagatggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

435

Amino Acids

47.63

Weight (kDa)

8.22

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39040
fragaria_vesca	FvH4_4g16970
malus_domestica	MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica	Prupe.1G143900_v2.0.a1
pyrus_communis	pycom13g15120
rosa_chinensis	RchiOBHm_Chr4g0420641
rosa_laevigata	RLG00000007745
rosa_multiflora	Rmu_sc0011080.1_g000008
rosa_roxburghii	Rroxscaffold_5G00363180
rosa_rugosa	Rorug04G0165100
rosa_samantha	Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana	Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccII	CGCG	2 cut(s)	467, 1070
AccIII	TCCGGA	1 cut(s)	491
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	5 cut(s)	149, 653, 808, 1055, 1239
AcsI	RAATTY	1 cut(s)	859
AcyI	GRCGYC	1 cut(s)	964
AfaI	GTAC	1 cut(s)	1039
AfiI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	6 cut(s)	243, 293, 682, 1133, 1183, 1210
AjnI	CCWGG	1 cut(s)	210
Alw21I	GWGCWC	1 cut(s)	1195
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	5 cut(s)	149, 653, 808, 1055, 1239
AlwNI	CAGNNNCTG	1 cut(s)	809
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	3 cut(s)	413, 790, 1246
ApeKI	GCWGC	7 cut(s)	152, 170, 187, 380, 473, 809, 1098
ApoI	RAATTY	1 cut(s)	859
AsiGI	ACCGGT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	454
AspLEI	GCGC	2 cut(s)	577, 1070
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	920
BanII	GRGCYC	1 cut(s)	1195
BbsI	GAAGAC	1 cut(s)	862
Bbv12I	GWGCWC	1 cut(s)	1195
BbvI	GCAGC	7 cut(s)	164, 174, 182, 392, 460, 796, 1110
BccI	CCATC	3 cut(s)	440, 590, 1295
BceAI	ACGGC	3 cut(s)	200, 265, 273
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	2 cut(s)	51, 1298
BfuAI	ACCTGC	1 cut(s)	415
BglI	GCCNNNNNGGC	3 cut(s)	421, 470, 1245
BglII	AGATCT	1 cut(s)	553
BlpI	GCTNAGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	5 cut(s)	211, 233, 259, 379, 796
BpiI	GAAGAC	1 cut(s)	862
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	964
BsaJI	CCNNGG	2 cut(s)	211, 465
BsaWI	WCCGGW	3 cut(s)	82, 282, 491
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
Bse118I	RCCGGY	2 cut(s)	282, 825
Bse3DI	GCAATG	1 cut(s)	595
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	211, 465
BseGI	GGATG	2 cut(s)	221, 274
BseLI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	3 cut(s)	68, 767, 953
BseRI	GAGGAG	1 cut(s)	1130
BseXI	GCAGC	7 cut(s)	164, 174, 182, 392, 460, 796, 1110
BseYI	CCCAGC	1 cut(s)	695
Bsh1236I	CGCG	2 cut(s)	467, 1070
Bsh1285I	CGRYCG	1 cut(s)	287
BshFI	GGCC	3 cut(s)	415, 792, 1248
BshTI	ACCGGT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	1195
BsiSI	CCGG	5 cut(s)	83, 283, 492, 710, 826
BslFI	GGGAC	4 cut(s)	327, 494, 653, 1239
BslI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
BsmAI	GTCTC	1 cut(s)	610
BsmFI	GGGAC	4 cut(s)	327, 494, 653, 1239
BsnI	GGCC	3 cut(s)	415, 792, 1248
Bsp1286I	GDGCHC	1 cut(s)	1195
Bsp13I	TCCGGA	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	1037
Bsp143I	GATC	8 cut(s)	141, 553, 658, 800, 982, 1047, 1231, 1287
Bsp1720I	GCTNAGC	1 cut(s)	174
BspANI	GGCC	3 cut(s)	415, 792, 1248
BspCNI	CTCAG	3 cut(s)	69, 768, 952
BspEI	TCCGGA	1 cut(s)	491
BspFNI	CGCG	2 cut(s)	467, 1070
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	5 cut(s)	149, 653, 808, 1055, 1239
BsrDI	GCAATG	1 cut(s)	595
BsrFI	RCCGGY	2 cut(s)	282, 825
BsrGI	TGTACA	1 cut(s)	1037
BssAI	RCCGGY	2 cut(s)	282, 825
BssECI	CCNNGG	2 cut(s)	211, 465
BssMI	GATC	8 cut(s)	141, 553, 658, 800, 982, 1047, 1231, 1287
BssNI	GRCGYC	1 cut(s)	964
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	721, 1037
Bst6I	CTCTTC	3 cut(s)	39, 330, 445
BstACI	GRCGYC	1 cut(s)	964
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	1037
BstC8I	GCNNGC	5 cut(s)	107, 413, 794, 831, 880
BstDEI	CTNAG	5 cut(s)	77, 174, 776, 939, 1250
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	221, 274
BstFNI	CGCG	2 cut(s)	467, 1070
BstHHI	GCGC	2 cut(s)	577, 1070
BstKTI	GATC	8 cut(s)	144, 556, 661, 803, 985, 1050, 1234, 1290
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	8 cut(s)	141, 553, 658, 800, 982, 1047, 1231, 1287
BstMCI	CGRYCG	1 cut(s)	287
BstMWI	GCNNNNNNNGC	9 cut(s)	102, 184, 380, 389, 421, 470, 473, 842, 1245
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	2 cut(s)	467, 1070
BstV1I	GCAGC	7 cut(s)	164, 174, 182, 392, 460, 796, 1110
BstV2I	GAAGAC	1 cut(s)	862
BstX2I	RGATCY	2 cut(s)	553, 1231
BstYI	RGATCY	2 cut(s)	553, 1231
BsuRI	GGCC	3 cut(s)	415, 792, 1248
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	221, 274
BtsIMutI	CAGTG	2 cut(s)	819, 1033
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	107, 413, 794, 831, 880
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	2 cut(s)	577, 1070
Cfr10I	RCCGGY	2 cut(s)	282, 825
Cfr13I	GGNCC	1 cut(s)	414
Cfr42I	CCGCGG	1 cut(s)	468
CseI	GACGC	1 cut(s)	972
Csp6I	GTAC	1 cut(s)	1038
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	7 cut(s)	138, 197, 418, 866, 874, 1041, 1123
CviQI	GTAC	1 cut(s)	1038
DdeI	CTNAG	5 cut(s)	77, 174, 776, 939, 1250
DpnI	GATC	8 cut(s)	143, 555, 660, 802, 984, 1049, 1233, 1289
DpnII	GATC	8 cut(s)	141, 553, 658, 800, 982, 1047, 1231, 1287
Eam1104I	CTCTTC	3 cut(s)	39, 330, 445
EarI	CTCTTC	3 cut(s)	39, 330, 445
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	1193
Eco147I	AGGCCT	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	1195
Eco32I	GATATC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	1193
EcoICRI	GAGCTC	1 cut(s)	1193
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	1195
FaeI	CATG	7 cut(s)	141, 200, 421, 869, 877, 1044, 1126
FaqI	GGGAC	4 cut(s)	327, 494, 653, 1239
FatI	CATG	7 cut(s)	137, 196, 417, 865, 873, 1040, 1122
FauI	CCCGC	3 cut(s)	114, 822, 1220
FauNDI	CATATG	1 cut(s)	667
FokI	GGATG	2 cut(s)	228, 281
FriOI	GRGCYC	1 cut(s)	1195
FspBI	CTAG	2 cut(s)	51, 1298
GlaI	GCGC	2 cut(s)	576, 1069
GsaI	CCCAGC	1 cut(s)	699
HaeIII	GGCC	3 cut(s)	415, 792, 1248
HapII	CCGG	5 cut(s)	83, 283, 492, 710, 826
HgaI	GACGC	1 cut(s)	972
HhaI	GCGC	2 cut(s)	577, 1070
Hin1I	GRCGYC	1 cut(s)	964
Hin1II	CATG	7 cut(s)	141, 200, 421, 869, 877, 1044, 1126
Hin6I	GCGC	2 cut(s)	575, 1068
HinP1I	GCGC	2 cut(s)	575, 1068
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	7 cut(s)	79, 239, 852, 918, 1028, 1150, 1198
HpaII	CCGG	5 cut(s)	83, 283, 492, 710, 826
HphI	GGTGA	1 cut(s)	920
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	6 cut(s)	587, 777, 800, 805, 1027, 1197
Hpy188III	TCNNGA	4 cut(s)	344, 492, 679, 1298
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	966, 1001
HpyAV	CCTTC	5 cut(s)	175, 259, 287, 498, 1017
HpyCH4III	ACNGT	2 cut(s)	721, 1037
HpyCH4IV	ACGT	2 cut(s)	12, 18
HpyF10VI	GCNNNNNNNGC	9 cut(s)	102, 184, 380, 389, 421, 470, 473, 842, 1245
HpyF3I	CTNAG	5 cut(s)	77, 174, 776, 939, 1250
HpySE526I	ACGT	2 cut(s)	12, 18
Hsp92I	GRCGYC	1 cut(s)	964
Hsp92II	CATG	7 cut(s)	141, 200, 421, 869, 877, 1044, 1126
HspAI	GCGC	2 cut(s)	575, 1068
Kpn2I	TCCGGA	1 cut(s)	491
KspI	CCGCGG	1 cut(s)	468
Kzo9I	GATC	8 cut(s)	141, 553, 658, 800, 982, 1047, 1231, 1287
LmnI	GCTCC	2 cut(s)	1190, 1198
Lsp1109I	GCAGC	7 cut(s)	164, 174, 182, 392, 460, 796, 1110
LweI	GCATC	5 cut(s)	211, 233, 259, 379, 796
MaeI	CTAG	2 cut(s)	51, 1298
MaeII	ACGT	2 cut(s)	12, 18
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	8 cut(s)	143, 555, 660, 802, 984, 1049, 1233, 1289
MboI	GATC	8 cut(s)	141, 553, 658, 800, 982, 1047, 1231, 1287
MboII	GAAGA	8 cut(s)	26, 129, 344, 347, 462, 861, 862, 1282
MflI	RGATCY	2 cut(s)	553, 1231
MhlI	GDGCHC	1 cut(s)	1195
MluCI	AATT	6 cut(s)	326, 404, 524, 859, 1204, 1242
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	982
Mph1103I	ATGCAT	1 cut(s)	226
MroI	TCCGGA	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	454
MseI	TTAA	1 cut(s)	1281
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	5 cut(s)	76, 467, 943, 1101, 1227
MspI	CCGG	5 cut(s)	83, 283, 492, 710, 826
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	2 cut(s)	467, 1070
MwoI	GCNNNNNNNGC	9 cut(s)	102, 184, 380, 389, 421, 470, 473, 842, 1245
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	8 cut(s)	141, 553, 658, 800, 982, 1047, 1231, 1287
NlaIII	CATG	7 cut(s)	141, 200, 421, 869, 877, 1044, 1126
NmuCI	GTSAC	1 cut(s)	908
NsiI	ATGCAT	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	6 cut(s)	239, 852, 918, 1028, 1150, 1198
PflFI	GACNNNGTC	1 cut(s)	995
PinAI	ACCGGT	1 cut(s)	282
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	1195
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	2 cut(s)	553, 1231
PsyI	GACNNNGTC	1 cut(s)	995
PvuII	CAGCTG	2 cut(s)	76, 943
RsaI	GTAC	1 cut(s)	1039
RsaNI	GTAC	1 cut(s)	1038
RseI	CAYNNNNRTG	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	1195
SacII	CCGCGG	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	1281
Sau3AI	GATC	8 cut(s)	141, 553, 658, 800, 982, 1047, 1231, 1287
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	1195
SfaNI	GCATC	5 cut(s)	211, 233, 259, 379, 796
Sfr303I	CCGCGG	1 cut(s)	468
SgrBI	CCGCGG	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	6 cut(s)	326, 404, 524, 859, 1204, 1242
SseBI	AGGCCT	1 cut(s)	792
SspMI	CTAG	2 cut(s)	51, 1298
SstI	GAGCTC	1 cut(s)	1195
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	721, 1037
TaiI	ACGT	2 cut(s)	15, 21
TaqI	TCGA	7 cut(s)	287, 753, 990, 1050, 1057, 1114, 1176
TasI	AATT	6 cut(s)	326, 404, 524, 859, 1204, 1242
TatI	WGTACW	1 cut(s)	1037
TauI	GCSGC	3 cut(s)	467, 836, 1073
TfiI	GAWTC	6 cut(s)	239, 852, 918, 1028, 1150, 1198
Tru1I	TTAA	1 cut(s)	1281
Tru9I	TTAA	1 cut(s)	1281
TscAI	CASTG	2 cut(s)	826, 1040
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	7 cut(s)	152, 170, 187, 380, 473, 809, 1098
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	7 cut(s)	315, 862, 914, 1081, 1265, 1280, 1282
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	2 cut(s)	826, 1040
Tth111I	GACNNNGTC	1 cut(s)	995
XagI	CCTNNNNNAGG	1 cut(s)	492
XapI	RAATTY	1 cut(s)	859
XbaI	TCTAGA	1 cut(s)	1297
XmnI	GAANNNNTTC	1 cut(s)	454
XspI	CTAG	2 cut(s)	51, 1298
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.