Prupe.1G143900_v2.0.a1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014605
Physical Location & Seq
Forward (+)
11325235 .. 11326783
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G143900.1

Sequence Viewer

Length: 993 bp
ATGAGGCTTGTCAATTTAAATGTTGTGTTTCTTTCTCTTCTTGTGCTCATAGAGGTTGTTAGTGTTTGCAATGGACGTGTCCTGAGCCCGGCCTTCTATCGCAAGAGCTGCCCTCAAATTGGAAGAATAGTGAGGAGCATTACATGGAGCAAGGTTGCAGCAAATCCTACCTTGGCAGCCAAGCTTCTAAGGCTCCACTACCATGATTGCTTTGTTAGGGGATGTGATGCATCAATATTGATAGACTCAACGAGTGGTAACACGGCGGAAAAGGATGCAATACCAAACAGGTCCATTGGAGGTTATGATGTTATTGATGAAATCAAAACCAAATTAGAAGAAGAATGTCTCGACATCGTCTCATGTGCTGATATTGTTGCCTTGGCTGCCAGGGATGCAGTTTCTTACCAATTTGGGAGGCCCATGTGGCAGGTTTTGACCGGCAGAAAAGATGGAAGAGTCTCACTTGCCTCAGAGGCTTCAAGGGACTTGCCCTCCGGAAATGCAAACTTCACCACCCTCCAACAGCAATTTGCTGGTCTTGGCCTAAACATCATAGATCTTGTCGCCTTATCAGGGGCACATACAATTGGAGTGGCACATTGCGCTGTATTTCAAAGGAGACTGAATGCGACAGGCAAAGGTGACGCCGACCCTTCACTTGATCCAGAATACGCACAGTTCTTGAGAACGCAATGCACCACCCCGCCTAACCCGGCGGTCGCAGTGGCATTGGACGCCAACAGCTCAGTTTCCTTTGACAGCCATTACTTTGCGGGTTTGAGGCACAACAAAGGGCTCTTGAGATCAGATGCAGCCCTACTCACTGACCCACGTTCGGCTAGAGTTGTAAAAAGCTTTCAAGGGTTCCACGTTTTCATGGCTAACTTTGGGCTTTCAATGAAGAAAATGGGTGCCATTGGTGTCAAAAAAGGTGCCCGGGATGATGGAGAGATTAGGAAGAATTGCAGGGTTGTTAATGCAGCTAATTAA

Protein Analysis

331

Amino Acids

35.67

Weight (kDa)

9.06

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39040
fragaria_vesca FvH4_4g16970
malus_domestica MD13G1175300.v1.1 MD16G1177000.v1.1
prunus_persica Prupe.1G143900_v2.0.a1
pyrus_communis pycom13g15120
rosa_chinensis RchiOBHm_Chr4g0420641
rosa_laevigata RLG00000007745
rosa_multiflora Rmu_sc0011080.1_g000008
rosa_roxburghii Rroxscaffold_5G00363180
rosa_rugosa Rorug04G0165100
rosa_samantha Rh4AG226600 Rh4BG229200 Rh4CG241500 Rh4DG224900
rosa_wichuraiana Rw4G019590 Rw4G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 421
AccB1I GGYRCC 2 cut(s) 914, 935
AccIII TCCGGA 1 cut(s) 497
AciI CCGC 4 cut(s) 266, 707, 719, 776
AclWI GGATC 1 cut(s) 659
AcyI GRCGYC 2 cut(s) 648, 738
AfiI CCNNNNNNNGG 4 cut(s) 88, 119, 576, 838
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 4 cut(s) 483, 617, 863, 900
AjiI CACGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 389
AluBI AGCT 5 cut(s) 108, 184, 747, 858, 986
AluI AGCT 5 cut(s) 108, 184, 747, 858, 986
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 4 cut(s) 353, 364, 466, 616
AlwI GGATC 1 cut(s) 659
Ama87I CYCGRG 1 cut(s) 939
Aor13HI TCCGGA 1 cut(s) 497
AoxI GGCC 3 cut(s) 90, 419, 544
ApeKI GCWGC 6 cut(s) 108, 158, 176, 386, 815, 983
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 291, 420
AsuC2I CCSGG 4 cut(s) 89, 716, 940, 941
AsuHPI GGTGA 2 cut(s) 505, 656
AvaI CYCGRG 1 cut(s) 939
AvaII GGWCC 1 cut(s) 291
BaeGI GKGCMC 2 cut(s) 583, 940
BanI GGYRCC 2 cut(s) 914, 935
BanII GRGCYC 2 cut(s) 89, 801
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 5 cut(s) 95, 170, 188, 373, 827
BccI CCATC 2 cut(s) 446, 941
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 391
BcnI CCSGG 4 cut(s) 89, 716, 940, 941
BcoDI GTCTC 4 cut(s) 353, 364, 466, 616
BfaI CTAG 1 cut(s) 843
BfuAI ACCTGC 1 cut(s) 421
BglI GCCNNNNNGGC 2 cut(s) 427, 476
BglII AGATCT 1 cut(s) 559
BisI GCNGC 6 cut(s) 109, 159, 177, 387, 816, 984
BlsI GCNGC 6 cut(s) 110, 160, 178, 388, 817, 985
Bme1390I CCNGG 5 cut(s) 89, 391, 716, 940, 941
Bme18I GGWCC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 939
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 291, 420
BmiI GGNNCC 4 cut(s) 194, 869, 916, 937
BmrFI CCNGG 5 cut(s) 89, 391, 716, 940, 941
BmsI GCATC 5 cut(s) 217, 239, 265, 385, 802
BplI GAGNNNNNCTC 2 cut(s) 97, 129
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 706, 823
BpuMI CCSGG 4 cut(s) 89, 716, 940, 941
BsaHI GRCGYC 2 cut(s) 648, 738
BsaJI CCNNGG 4 cut(s) 171, 381, 390, 939
BsaWI WCCGGW 1 cut(s) 497
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 119, 576, 838
Bse118I RCCGGY 1 cut(s) 440
Bse3DI GCAATG 3 cut(s) 76, 601, 701
BseAI TCCGGA 1 cut(s) 497
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 4 cut(s) 171, 381, 390, 939
BseGI GGATG 4 cut(s) 227, 280, 400, 949
BseLI CCNNNNNNNGG 4 cut(s) 88, 119, 576, 838
BseMI GCAATG 3 cut(s) 76, 601, 701
BseMII CTCAG 3 cut(s) 74, 486, 762
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 2 cut(s) 583, 940
BseXI GCAGC 5 cut(s) 95, 170, 188, 373, 827
Bsh1285I CGRYCG 1 cut(s) 723
BshFI GGCC 3 cut(s) 92, 421, 546
BshNI GGYRCC 2 cut(s) 914, 935
BsiEI CGRYCG 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 939
BsiSI CCGG 5 cut(s) 89, 441, 498, 716, 940
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 4 cut(s) 88, 119, 576, 838
BsmAI GTCTC 4 cut(s) 353, 364, 466, 616
BsmBI CGTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 3 cut(s) 92, 421, 546
BsoBI CYCGRG 1 cut(s) 939
Bsp1286I GDGCHC 5 cut(s) 48, 89, 583, 801, 940
Bsp13I TCCGGA 1 cut(s) 497
Bsp143I GATC 3 cut(s) 559, 664, 806
BspACI CCGC 4 cut(s) 266, 707, 719, 776
BspANI GGCC 3 cut(s) 92, 421, 546
BspCNI CTCAG 3 cut(s) 75, 485, 761
BspEI TCCGGA 1 cut(s) 497
BspLI GGNNCC 4 cut(s) 194, 869, 916, 937
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 1 cut(s) 659
BspT107I GGYRCC 2 cut(s) 914, 935
BsrDI GCAATG 3 cut(s) 76, 601, 701
BsrFI RCCGGY 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 4 cut(s) 171, 381, 390, 939
BssMI GATC 3 cut(s) 559, 664, 806
BssNI GRCGYC 2 cut(s) 648, 738
BssT1I CCWWGG 2 cut(s) 171, 381
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 2 cut(s) 42, 451
BstACI GRCGYC 2 cut(s) 648, 738
BstAPI GCANNNNNTGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 83, 188, 472, 748
BstF5I GGATG 4 cut(s) 227, 280, 400, 949
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 3 cut(s) 562, 667, 809
BstMAI GTCTC 4 cut(s) 353, 364, 466, 616
BstMBI GATC 3 cut(s) 559, 664, 806
BstMCI CGRYCG 1 cut(s) 723
BstMWI GCNNNNNNNGC 8 cut(s) 108, 190, 386, 395, 427, 476, 605, 737
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 5 cut(s) 87, 389, 714, 938, 939
BstSLI GKGCMC 2 cut(s) 583, 940
BstV1I GCAGC 5 cut(s) 95, 170, 188, 373, 827
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 3 cut(s) 92, 421, 546
BtrI CACGTC 1 cut(s) 77
BtsCI GGATG 4 cut(s) 227, 280, 400, 949
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 2 cut(s) 732, 825
BveI ACCTGC 1 cut(s) 421
CfoI GCGC 1 cut(s) 608
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 291, 420
Cfr9I CCCGGG 1 cut(s) 939
CseI GACGC 2 cut(s) 656, 746
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 5 cut(s) 144, 203, 363, 424, 880
DdeI CTNAG 4 cut(s) 83, 188, 472, 748
DpnI GATC 3 cut(s) 561, 666, 808
DpnII GATC 3 cut(s) 559, 664, 806
DraI TTTAAA 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 42, 451
EarI CTCTTC 2 cut(s) 42, 451
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 2 cut(s) 171, 381
Eco24I GRGCYC 2 cut(s) 89, 801
Eco47I GGWCC 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 939
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 2 cut(s) 171, 381
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 89, 801
ErhI CCWWGG 2 cut(s) 171, 381
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 5 cut(s) 147, 206, 366, 427, 883
FaiI YATR 9 cut(s) 50, 145, 204, 306, 364, 425, 557, 585, 881
FaqI GGGAC 1 cut(s) 500
FatI CATG 5 cut(s) 143, 202, 362, 423, 879
FauI CCCGC 2 cut(s) 714, 769
Fnu4HI GCNGC 6 cut(s) 109, 159, 177, 387, 816, 984
FokI GGATG 4 cut(s) 234, 287, 407, 956
FriOI GRGCYC 2 cut(s) 89, 801
Fsp4HI GCNGC 6 cut(s) 109, 159, 177, 387, 816, 984
FspBI CTAG 1 cut(s) 843
GlaI GCGC 1 cut(s) 607
GluI GCNGC 6 cut(s) 109, 159, 177, 387, 816, 984
HaeIII GGCC 3 cut(s) 92, 421, 546
HapII CCGG 5 cut(s) 89, 441, 498, 716, 940
HgaI GACGC 2 cut(s) 656, 746
HhaI GCGC 1 cut(s) 608
Hin1I GRCGYC 2 cut(s) 648, 738
Hin1II CATG 5 cut(s) 147, 206, 366, 427, 883
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HindIII AAGCTT 2 cut(s) 182, 856
HinfI GANTC 2 cut(s) 245, 459
HpaII CCGG 5 cut(s) 89, 441, 498, 716, 940
HphI GGTGA 2 cut(s) 505, 656
Hpy188I TCNGA 2 cut(s) 475, 811
Hpy188III TCNNGA 6 cut(s) 82, 350, 498, 668, 685, 802
HpyAV CCTTC 2 cut(s) 103, 666
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4IV ACGT 3 cut(s) 76, 835, 873
HpyF10VI GCNNNNNNNGC 8 cut(s) 108, 190, 386, 395, 427, 476, 605, 737
HpyF3I CTNAG 4 cut(s) 83, 188, 472, 748
HpySE526I ACGT 3 cut(s) 76, 835, 873
Hsp92I GRCGYC 2 cut(s) 648, 738
Hsp92II CATG 5 cut(s) 147, 206, 366, 427, 883
HspAI GCGC 1 cut(s) 606
Kpn2I TCCGGA 1 cut(s) 497
Kzo9I GATC 3 cut(s) 559, 664, 806
LmnI GCTCC 3 cut(s) 135, 147, 198
Lsp1109I GCAGC 5 cut(s) 95, 170, 188, 373, 827
LweI GCATC 5 cut(s) 217, 239, 265, 385, 802
MaeI CTAG 1 cut(s) 843
MaeII ACGT 3 cut(s) 76, 835, 873
MaeIII GTNAC 2 cut(s) 257, 644
MalI GATC 3 cut(s) 561, 666, 808
MboI GATC 3 cut(s) 559, 664, 806
MboII GAAGA 7 cut(s) 29, 135, 350, 353, 468, 916, 973
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 5 cut(s) 48, 89, 583, 801, 940
MluCI AATT 8 cut(s) 13, 117, 332, 410, 530, 588, 964, 988
MlyI GAGTC 2 cut(s) 239, 468
MmeI TCCRAC 1 cut(s) 547
Mph1103I ATGCAT 1 cut(s) 232
MroI TCCGGA 1 cut(s) 497
MseI TTAA 3 cut(s) 17, 978, 991
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 5 cut(s) 89, 441, 498, 716, 940
MspR9I CCNGG 5 cut(s) 89, 391, 716, 940, 941
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 1 cut(s) 391
MwoI GCNNNNNNNGC 8 cut(s) 108, 190, 386, 395, 427, 476, 605, 737
NciI CCSGG 4 cut(s) 89, 716, 940, 941
NdeII GATC 3 cut(s) 559, 664, 806
NlaIII CATG 5 cut(s) 147, 206, 366, 427, 883
NlaIV GGNNCC 4 cut(s) 194, 869, 916, 937
NmuCI GTSAC 1 cut(s) 644
NsiI ATGCAT 1 cut(s) 232
PctI GAATGC 1 cut(s) 634
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 6 cut(s) 110, 160, 178, 388, 817, 985
PleI GAGTC 2 cut(s) 239, 467
PpsI GAGTC 2 cut(s) 239, 467
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 4 cut(s) 194, 869, 916, 937
PspPI GGNCC 2 cut(s) 291, 420
PsuI RGATCY 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 3 cut(s) 17, 978, 991
SatI GCNGC 6 cut(s) 109, 159, 177, 387, 816, 984
Sau3AI GATC 3 cut(s) 559, 664, 806
Sau96I GGNCC 2 cut(s) 291, 420
SchI GAGTC 2 cut(s) 239, 468
ScrFI CCNGG 5 cut(s) 89, 391, 716, 940, 941
SduI GDGCHC 5 cut(s) 48, 89, 583, 801, 940
SfaNI GCATC 5 cut(s) 217, 239, 265, 385, 802
SinI GGWCC 1 cut(s) 291
SmaI CCCGGG 1 cut(s) 941
SmiI ATTTAAAT 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 685, 802
SmoI CTYRAG 2 cut(s) 685, 802
Sse9I AATT 8 cut(s) 13, 117, 332, 410, 530, 588, 964, 988
SsiI CCGC 4 cut(s) 266, 707, 719, 776
SspI AATATT 1 cut(s) 237
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 5 cut(s) 87, 389, 714, 938, 939
StyI CCWWGG 2 cut(s) 171, 381
SwaI ATTTAAAT 1 cut(s) 18
TaaI ACNGT 1 cut(s) 681
TaiI ACGT 3 cut(s) 79, 838, 876
TaqI TCGA 1 cut(s) 351
TasI AATT 8 cut(s) 13, 117, 332, 410, 530, 588, 964, 988
Tru1I TTAA 3 cut(s) 17, 978, 991
Tru9I TTAA 3 cut(s) 17, 978, 991
TscAI CASTG 2 cut(s) 732, 832
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 6 cut(s) 108, 158, 176, 386, 815, 983
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 3 cut(s) 333, 868, 917
TspMI CCCGGG 1 cut(s) 939
TspRI CASTG 2 cut(s) 732, 832
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 291
XmaI CCCGGG 1 cut(s) 939
XspI CTAG 1 cut(s) 843
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.