Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Reverse (-)

28894875 .. 28901371

Gene Structure 6497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2796 bp

ATGAAGAAAGTCTTTGATCAAACTGTCAGGGACCTAAAGAGAGGGGTGAACAAGAAAGTGCTTAAAGTTCCTGGAATTGAACAGAAGGTTCTCGATGCTACTAGTAATGAGCCGTGGGGTCCTCATGGATCACTTCTTGCTGATATTGCACAAGCAAGCAGAAACTATCATGAGTACCAAATGATTATGTCCGTGATTTGGAAGCGGCTTAGTGATACTGGGAAAAACTGGCGGCATGTCTACAAGGGTTTAACTGTATTGGAATACATGGTGGCCCATGGCTCGGAGCGTGTCATTGATGATATCAAGGAGCATGTATATCAAATATCGACATTGTCCGATTTCCAATACATCGATTCCAGTGGAAGGGACCAGGGAAGTAATGTCAGAAAGAAGTCTCAGAGTCTTGTGGCTCTTGTGAATGATAGGGAAAGGATAATTGAGGTTAGACAGAAAGCAGCTGCCAACAGGGACAAGTTTCGCAACACACCGTCATCTGGTGGAATGTATAGGCCCGGTTCTTATTCTGACAAAAATGAAGATGATCGTTATGGAGGCAGGGATGAAGATAGGAACGGTTATGGTTATGGAAAGGACAAAGAATGGGGTTATAAGGATGATGACCGTTATGGAAGAGCTGGGGATTCATATGGTCGTGATGGAGATCGTTATGGCAGAGAATATGATGAACGCAATGGCAGAGAAGGTTACAGAGATGATGATTACCGTGGAAGAAGCCGAAGTGTTGATGAATACCAGTATGGCTCTAGAAGTAGAAGCTCTGATAGAGAGAGAGAGCGTGCATATGATGATGATGGTCAATATTCATCTCGTGGCAGTGGTGCTAGAGCTGATGACCAATCTCAGGATGGAAGGCTAAGTAGGAAATTTTCGGAACAGAACATTGCTCCTCCTAGTTACGAAGAGGCTGTAAGTGAAACTCGAAGCCCTGTTCATAGTGAGAGGGATGGTGAACCTCCAGCAGTTTCTGCTCCCAGAGCTTCTTCTCCACCTGCAACCAGTAATCCAAGCCAAGCAACCACTGTTCAAGCTCCTGCTGCAAGCTATAATCCAAGCCAAGCAACTAGTGCTCCAGTTACTTATGCATCGCCTGTAAAACAGGAACCGGAGCCTTTTGATGAATTTGATCCACGTGGTTCTGTTTCGGGTGGTCCTTTTGGTTCTGTTTCAGCTGCCCCAACTACTTCAAACAATGCTGAGATGGACTTACTTGGTTCCCTATCAGAGTCATTTTCTTCAAACTCATTGGCCATTGTGCCAACTACATCTACTACTACTACATCTGAAGTTGATGGCCTTGTAAATTCTGCTCCAGTGACCACATTTATGGCAACTCCTCCAGTCTCTAATGTCATGAATCAGTCTTTTGAAGATCCATTTGGTGAAACCCCCTTTAAAGCTTTCCCTTCCAGTGAAACTGTGCAGTCTCAACCACAGACATCCACTTCTGCAGACGTTTTCCCGCCAACCACGAGTCAGAGTGCAGATACAGTCTCCAACTTTCCTTTTGGGGACTCATTTTCCGCTGTAACTTATTCTGCCTCTGGTGTTTCCAGTGTTCAAACTCCAGCCGATTCCCAGTTTTTACCTCAAGATCCGTCCACTGAAGACCAGAACACTGATATTCTAGCCGATATTCTCCCACCTTCTGGAGCTTCACAGCCATCATTTCCAGGTCCCGCAGGTCAACCTTCACAGCCAACTGCAAATATATATGGGAACTTTCAATCGCAGCCAGGACCTATGGTTCCTCAGACTCAAACTGGATTTTCTGGACAACACAGTGGTGGGGCTTTTCCATCGCAGGGAGGGCCGACAGCACCTATCACTTCACATGCGGCTCCTCAAATGCCAGCAGGACAAGCTTCACAGTATAATAATGGAAATTTCATGTCACAACAAGGTGGATATGCAGCTCCTAACAGTGGATATGCAGCTCCTAACAGTGGAAACTACTATTCACAGCAGGGAGGATCCACTGGTCCCATCACTCCTTACATTGCTTCTCAAAGTCAAACTGGAGCAGCTGCCCAGTATGGTGGTGGAAGCTATGTTGCGCAACAAGGTTCCGTCACTTCACAGGTTTCTCATCAAGCTCCAACTGGGCCAGCTCCGCAACACAACATTGATGCTCTGGGTAACCTTCTTCCCCAAGGAGGATCAACTACTCTGACATCGACAACAGGGGCACTAGCTTTAGTTGAACAACCACCTAAAGAAAACAAGTTTGAGACCAAATCAGCAGTTTGGGCTGATACACTGAGTAGAGGGCTAGTTAACTTGAACATATCTGGAGCTAAGATTAATCCGTTGAATGATATTGGAATTGATTTTGATGCCATTAATCGGAAGGAAAAGAGGATGGAGAGGCAGCCAGCAACTTCTGCAACATCTACTATTTCCATGGGTAAAGCCATGGGATCTGGTTCTGGTATGGGCCGTGCCGGTGCAAGTGTTCTTAGGGCTCCAGCAAACCCTATGGTGGGTTCTGGTATGGGCATGGGTATGGGTCCGGGTCAGGGTCCGGGGATGGGGATGGGTATGGGCATGGGTGGTGGTCCTGGTGGGGGAATGGGCATGGGTGGTTATGGAGGCATGAATCAACCCATGGGTGCCGGAATGGGAATGGGAATGAACATGGGTATGGGAATGAATATGGGCATGGGCATGCAACGGCCAACTGGATTACCTCCCGGGTCAAACATGCCCAATGGTTATAACCCTATGATGGGCCAAGGTGGTTATCCTCAGCAACCATATGGCGGCTACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

931

Amino Acids

98.6

Weight (kDa)

5.35

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ENTH	PF01417	26 - 146	3.2e-48	ENTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	612, 2739
AarI	CACCTGC	1 cut(s)	1021
Acc16I	TGCGCA	1 cut(s)	2079
Acc36I	ACCTGC	2 cut(s)	1021, 1694
AccB1I	GGYRCC	1 cut(s)	2633
AccB7I	CCANNNNNTGG	1 cut(s)	1670
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	8 cut(s)	205, 232, 1484, 1545, 1701, 1859, 2135, 2784
AclWI	GGATC	8 cut(s)	136, 1142, 1388, 1610, 1989, 2002, 2188, 2449
AcoI	YGGCCR	2 cut(s)	1269, 2696
AcsI	RAATTY	4 cut(s)	887, 1142, 1324, 1906
AcuI	CTGAAG	2 cut(s)	1326, 1647
AcvI	CACGTG	1 cut(s)	1154
AfaI	GTAC	1 cut(s)	176
AhlI	ACTAGT	2 cut(s)	101, 1085
AjnI	CCWGG	5 cut(s)	70, 372, 1693, 1756, 2581
AjuI	GAANNNNNNNTTGG	2 cut(s)	1383, 1415
AleI	CACNNNNGTG	1 cut(s)	1806
AloI	GAACNNNNNNTCC	2 cut(s)	1752, 1784
Alw21I	GWGCWC	1 cut(s)	1093
Alw26I	GTCTC	5 cut(s)	402, 1369, 1452, 1519, 2246
AlwI	GGATC	8 cut(s)	136, 1142, 1388, 1610, 1989, 2002, 2188, 2449
AlwNI	CAGNNNCTG	1 cut(s)	989
Ama87I	CYCGRG	1 cut(s)	2714
AoxI	GGCC	9 cut(s)	273, 512, 1269, 1315, 1832, 2126, 2458, 2696, 2752
ApoI	RAATTY	4 cut(s)	887, 1142, 1324, 1906
AseI	ATTAAT	2 cut(s)	2325, 2364
AspLEI	GCGC	1 cut(s)	2080
AsuC2I	CCSGG	5 cut(s)	516, 2535, 2547, 2715, 2716
AsuHPI	GGTGA	3 cut(s)	58, 983, 1415
AvaI	CYCGRG	1 cut(s)	2714
BaeGI	GKGCMC	1 cut(s)	2212
BalI	TGGCCA	1 cut(s)	1271
BamHI	GGATCC	1 cut(s)	1994
BanI	GGYRCC	1 cut(s)	2633
BanII	GRGCYC	1 cut(s)	2488
BauI	CACGAG	2 cut(s)	831, 1492
BbrPI	CACGTG	1 cut(s)	1154
BbsI	GAAGAC	1 cut(s)	1635
Bbv12I	GWGCWC	1 cut(s)	1093
BbvCI	CCTCAGC	1 cut(s)	2769
BceAI	ACGGC	3 cut(s)	97, 2445, 2711
BciT130I	CCWGG	5 cut(s)	72, 374, 1695, 1758, 2583
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	5 cut(s)	516, 2535, 2547, 2715, 2716
BcoDI	GTCTC	5 cut(s)	402, 1369, 1452, 1519, 2246
BcuI	ACTAGT	2 cut(s)	101, 1085
BfaI	CTAG	8 cut(s)	102, 768, 846, 915, 1086, 1649, 2213, 2294
BfmI	CTRYAG	1 cut(s)	1470
BfuAI	ACCTGC	2 cut(s)	1021, 1694
BmeT110I	CYCGRG	1 cut(s)	2714
BmrI	ACTGGG	4 cut(s)	228, 1594, 2047, 2133
BmsI	GCATC	4 cut(s)	85, 1115, 2140, 2347
BmuI	ACTGGG	4 cut(s)	228, 1594, 2047, 2133
BpiI	GAAGAC	1 cut(s)	1635
BpmI	CTGGAG	9 cut(s)	963, 1077, 1317, 1344, 1572, 1692, 2061, 2334, 2472
Bpu10I	CCTNAGC	1 cut(s)	2769
BpuEI	CTTGAG	1 cut(s)	1596
BpuMI	CCSGG	5 cut(s)	516, 2535, 2547, 2715, 2716
Bsa29I	ATCGAT	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	1154
BsaBI	GATNNNNATC	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	2246
BsaWI	WCCGGW	1 cut(s)	1126
BsaXI	ACNNNNNCTCC	2 cut(s)	1075, 1105
Bse118I	RCCGGY	1 cut(s)	2465
Bse3DI	GCAATG	3 cut(s)	700, 903, 2019
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	5 cut(s)	72, 374, 1695, 1758, 2583
BseCI	ATCGAT	1 cut(s)	354
BseGI	GGATG	8 cut(s)	568, 622, 874, 973, 1460, 2388, 2556, 2562
BseJI	GATNNNNATC	1 cut(s)	663
BseMI	GCAATG	3 cut(s)	700, 903, 2019
BseMII	CTCAG	6 cut(s)	413, 878, 1209, 1787, 2273, 2783
BseRI	GAGGAG	3 cut(s)	900, 1347, 1854
BseSI	GKGCMC	1 cut(s)	2212
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	2 cut(s)	1463, 1524
BshFI	GGCC	9 cut(s)	275, 514, 1271, 1317, 1834, 2128, 2460, 2698, 2754
BshNI	GGYRCC	1 cut(s)	2633
BshVI	ATCGAT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	1093
BsiHKCI	CYCGRG	1 cut(s)	2714
BsiSI	CCGG	7 cut(s)	516, 1127, 2466, 2534, 2546, 2637, 2715
BslFI	GGGAC	6 cut(s)	44, 383, 485, 1547, 1683, 1989
BsmAI	GTCTC	5 cut(s)	402, 1369, 1452, 1519, 2246
BsmFI	GGGAC	6 cut(s)	44, 383, 485, 1547, 1683, 1989
BsnI	GGCC	9 cut(s)	275, 514, 1271, 1317, 1834, 2128, 2460, 2698, 2754
Bso31I	GGTCTC	1 cut(s)	2246
BsoBI	CYCGRG	1 cut(s)	2714
Bsp1286I	GDGCHC	3 cut(s)	1093, 2212, 2488
Bsp19I	CCATGG	4 cut(s)	277, 2424, 2436, 2628
BspACI	CCGC	8 cut(s)	205, 232, 1484, 1545, 1701, 1859, 2135, 2784
BspANI	GGCC	9 cut(s)	275, 514, 1271, 1317, 1834, 2128, 2460, 2698, 2754
BspCNI	CTCAG	6 cut(s)	412, 877, 1210, 1786, 2274, 2782
BspDI	ATCGAT	1 cut(s)	354
BspHI	TCATGA	2 cut(s)	169, 1374
BspMAI	CTGCAG	1 cut(s)	1474
BspMI	ACCTGC	2 cut(s)	1021, 1694
BspPI	GGATC	8 cut(s)	136, 1142, 1388, 1610, 1989, 2002, 2188, 2449
BspQI	GCTCTTC	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	2633
BspTNI	GGTCTC	1 cut(s)	2246
BsrDI	GCAATG	3 cut(s)	700, 903, 2019
BsrFI	RCCGGY	1 cut(s)	2465
BssAI	RCCGGY	1 cut(s)	2465
BssSI	CACGAG	2 cut(s)	831, 1492
BssT1I	CCWWGG	6 cut(s)	277, 2173, 2424, 2436, 2628, 2755
Bst2BI	CACGAG	2 cut(s)	831, 1492
Bst2UI	CCWGG	5 cut(s)	72, 374, 1695, 1758, 2583
Bst6I	CTCTTC	2 cut(s)	628, 918
BstAPI	GCANNNNNTGC	3 cut(s)	989, 1088, 2405
BstBAI	YACGTR	1 cut(s)	1154
BstC8I	GCNNGC	7 cut(s)	157, 801, 1063, 1875, 2130, 2397, 2690
BstDSI	CCRYGG	6 cut(s)	113, 277, 727, 2424, 2436, 2628
BstEII	GGTNACC	1 cut(s)	2159
BstF5I	GGATG	8 cut(s)	568, 622, 874, 973, 1460, 2388, 2556, 2562
BstHHI	GCGC	1 cut(s)	2080
BstMAI	GTCTC	5 cut(s)	402, 1369, 1452, 1519, 2246
BstNI	CCWGG	5 cut(s)	72, 374, 1695, 1758, 2583
BstNSI	RCATGY	5 cut(s)	239, 317, 1859, 2692, 2728
BstPI	GGTNACC	1 cut(s)	2159
BstSFI	CTRYAG	1 cut(s)	1470
BstSLI	GKGCMC	1 cut(s)	2212
BstV2I	GAAGAC	1 cut(s)	1635
BstX2I	RGATCY	4 cut(s)	1393, 1615, 1994, 2441
BstXI	CCANNNNNNTGG	2 cut(s)	1348, 2060
BstYI	RGATCY	4 cut(s)	1393, 1615, 1994, 2441
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	9 cut(s)	275, 514, 1271, 1317, 1834, 2128, 2460, 2698, 2754
BsuTUI	ATCGAT	1 cut(s)	354
BtgI	CCRYGG	6 cut(s)	113, 277, 727, 2424, 2436, 2628
BtgZI	GCGATG	2 cut(s)	1092, 1806
BtsCI	GGATG	8 cut(s)	568, 622, 874, 973, 1460, 2388, 2556, 2562
BtsI	GCAGTG	1 cut(s)	844
BveI	ACCTGC	2 cut(s)	1021, 1694
Cac8I	GCNNGC	7 cut(s)	157, 801, 1063, 1875, 2130, 2397, 2690
CaiI	CAGNNNCTG	1 cut(s)	989
CciI	TCATGA	2 cut(s)	169, 1374
CfoI	GCGC	1 cut(s)	2080
Cfr10I	RCCGGY	1 cut(s)	2465
Cfr9I	CCCGGG	1 cut(s)	2714
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	175
CviQI	GTAC	1 cut(s)	175
DraI	TTTAAA	1 cut(s)	1417
EaeI	YGGCCR	2 cut(s)	1269, 2696
Eam1104I	CTCTTC	2 cut(s)	628, 918
EarI	CTCTTC	2 cut(s)	628, 918
Eco130I	CCWWGG	6 cut(s)	277, 2173, 2424, 2436, 2628, 2755
Eco24I	GRGCYC	1 cut(s)	2488
Eco31I	GGTCTC	1 cut(s)	2246
Eco32I	GATATC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	1326, 1647
Eco72I	CACGTG	1 cut(s)	1154
Eco88I	CYCGRG	1 cut(s)	2714
Eco91I	GGTNACC	1 cut(s)	2159
EcoO109I	RGGNCCY	4 cut(s)	31, 119, 1697, 1760
EcoO65I	GGTNACC	1 cut(s)	2159
EcoRII	CCWGG	5 cut(s)	70, 372, 1693, 1756, 2581
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	6 cut(s)	277, 2173, 2424, 2436, 2628, 2755
EcoT22I	ATGCAT	1 cut(s)	1108
EcoT38I	GRGCYC	1 cut(s)	2488
ErhI	CCWWGG	6 cut(s)	277, 2173, 2424, 2436, 2628, 2755
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	6 cut(s)	44, 383, 485, 1547, 1683, 1989
FauI	CCCGC	2 cut(s)	1491, 1708
FauNDI	CATATG	3 cut(s)	649, 805, 2779
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	240
FokI	GGATG	8 cut(s)	575, 629, 881, 980, 1447, 2395, 2563, 2569
FriOI	GRGCYC	1 cut(s)	2488
FspBI	CTAG	8 cut(s)	102, 768, 846, 915, 1086, 1649, 2213, 2294
FspI	TGCGCA	1 cut(s)	2079
GlaI	GCGC	1 cut(s)	2079
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	9 cut(s)	963, 1077, 1317, 1344, 1572, 1692, 2061, 2334, 2472
HaeIII	GGCC	9 cut(s)	275, 514, 1271, 1317, 1834, 2128, 2460, 2698, 2754
HapII	CCGG	7 cut(s)	516, 1127, 2466, 2534, 2546, 2637, 2715
HhaI	GCGC	1 cut(s)	2080
Hin6I	GCGC	1 cut(s)	2078
HinP1I	GCGC	1 cut(s)	2078
HincII	GTYRAC	2 cut(s)	1709, 2299
HindII	GTYRAC	2 cut(s)	1709, 2299
HindIII	AAGCTT	2 cut(s)	1419, 1884
HpaI	GTTAAC	1 cut(s)	2299
HpaII	CCGG	7 cut(s)	516, 1127, 2466, 2534, 2546, 2637, 2715
HphI	GGTGA	3 cut(s)	58, 983, 1415
Hpy166II	GTNNAC	6 cut(s)	49, 241, 974, 1623, 1709, 2299
Hpy8I	GTNNAC	6 cut(s)	49, 241, 974, 1623, 1709, 2299
HpyAV	CCTTC	9 cut(s)	79, 360, 698, 867, 1437, 1677, 1722, 2174, 2365
HpyCH4IV	ACGT	2 cut(s)	1153, 1476
HpySE526I	ACGT	2 cut(s)	1153, 1476
HspAI	GCGC	1 cut(s)	2078
Ksp22I	TGATCA	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	2299
LguI	GCTCTTC	1 cut(s)	628
LweI	GCATC	4 cut(s)	85, 1115, 2140, 2347
MaeI	CTAG	8 cut(s)	102, 768, 846, 915, 1086, 1649, 2213, 2294
MaeII	ACGT	2 cut(s)	1153, 1476
MaeIII	GTNAC	8 cut(s)	707, 917, 1096, 1336, 1549, 1914, 2092, 2159
MflI	RGATCY	4 cut(s)	1393, 1615, 1994, 2441
MhlI	GDGCHC	3 cut(s)	1093, 2212, 2488
MlsI	TGGCCA	1 cut(s)	1271
MluCI	AATT	7 cut(s)	75, 438, 887, 1142, 1324, 1906, 2346
MluNI	TGGCCA	1 cut(s)	1271
MlyI	GAGTC	5 cut(s)	412, 1256, 1504, 1529, 1771
MmeI	TCCRAC	2 cut(s)	1542, 2144
Mox20I	TGGCCA	1 cut(s)	1271
Mph1103I	ATGCAT	1 cut(s)	1108
MscI	TGGCCA	1 cut(s)	1271
MseI	TTAA	6 cut(s)	63, 251, 1416, 2298, 2325, 2364
MslI	CAYNNNNRTG	5 cut(s)	1346, 1806, 2525, 2663, 2687
Msp20I	TGGCCA	1 cut(s)	1271
MspA1I	CMGCKG	4 cut(s)	461, 1193, 1547, 2048
MspI	CCGG	7 cut(s)	516, 1127, 2466, 2534, 2546, 2637, 2715
MvaI	CCWGG	5 cut(s)	72, 374, 1695, 1758, 2583
NciI	CCSGG	5 cut(s)	516, 2535, 2547, 2715, 2716
NcoI	CCATGG	4 cut(s)	277, 2424, 2436, 2628
NdeI	CATATG	3 cut(s)	649, 805, 2779
NmuCI	GTSAC	3 cut(s)	1336, 1914, 2092
NsbI	TGCGCA	1 cut(s)	2079
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	5 cut(s)	239, 317, 1859, 2692, 2728
OliI	CACNNNNGTG	1 cut(s)	1806
PaeI	GCATGC	1 cut(s)	2692
PagI	TCATGA	2 cut(s)	169, 1374
PaqCI	CACCTGC	1 cut(s)	1021
PciSI	GCTCTTC	1 cut(s)	628
PfeI	GAWTC	5 cut(s)	356, 644, 1378, 1595, 2620
PflFI	GACNNNGTC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	1670
PfoI	TCCNGGA	1 cut(s)	70
PleI	GAGTC	5 cut(s)	411, 1255, 1503, 1529, 1771
PmaCI	CACGTG	1 cut(s)	1154
PmlI	CACGTG	1 cut(s)	1154
PpsI	GAGTC	5 cut(s)	411, 1255, 1503, 1529, 1771
Ppu21I	YACGTR	1 cut(s)	1154
PpuMI	RGGWCCY	4 cut(s)	31, 119, 1697, 1760
PshBI	ATTAAT	2 cut(s)	2325, 2364
PsiI	TTATAA	2 cut(s)	612, 2739
Psp5II	RGGWCCY	4 cut(s)	31, 119, 1697, 1760
Psp6I	CCWGG	5 cut(s)	70, 372, 1693, 1756, 2581
PspCI	CACGTG	1 cut(s)	1154
PspEI	GGTNACC	1 cut(s)	2159
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	5 cut(s)	70, 372, 1693, 1756, 2581
PspPPI	RGGWCCY	4 cut(s)	31, 119, 1697, 1760
PstI	CTGCAG	1 cut(s)	1474
PstNI	CAGNNNCTG	1 cut(s)	989
PsuI	RGATCY	4 cut(s)	1393, 1615, 1994, 2441
PsyI	GACNNNGTC	1 cut(s)	334
PvuII	CAGCTG	3 cut(s)	461, 1193, 2048
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	5 cut(s)	1346, 1806, 2525, 2663, 2687
SapI	GCTCTTC	1 cut(s)	628
SaqAI	TTAA	6 cut(s)	63, 251, 1416, 2298, 2325, 2364
SchI	GAGTC	5 cut(s)	412, 1256, 1504, 1529, 1771
SduI	GDGCHC	3 cut(s)	1093, 2212, 2488
SfaNI	GCATC	4 cut(s)	85, 1115, 2140, 2347
SfcI	CTRYAG	1 cut(s)	1470
SmaI	CCCGGG	1 cut(s)	2716
SmiMI	CAYNNNNRTG	5 cut(s)	1346, 1806, 2525, 2663, 2687
SmlI	CTYRAG	1 cut(s)	1611
SmoI	CTYRAG	1 cut(s)	1611
SpeI	ACTAGT	2 cut(s)	101, 1085
SphI	GCATGC	1 cut(s)	2692
Sse9I	AATT	7 cut(s)	75, 438, 887, 1142, 1324, 1906, 2346
SsiI	CCGC	8 cut(s)	205, 232, 1484, 1545, 1701, 1859, 2135, 2784
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	8 cut(s)	102, 768, 846, 915, 1086, 1649, 2213, 2294
StyI	CCWWGG	6 cut(s)	277, 2173, 2424, 2436, 2628, 2755
TaiI	ACGT	2 cut(s)	1156, 1479
TaqI	TCGA	5 cut(s)	93, 329, 354, 943, 2198
TasI	AATT	7 cut(s)	75, 438, 887, 1142, 1324, 1906, 2346
TauI	GCSGC	4 cut(s)	208, 235, 1862, 2787
TfiI	GAWTC	5 cut(s)	356, 644, 1378, 1595, 2620
Tru1I	TTAA	6 cut(s)	63, 251, 1416, 2298, 2325, 2364
Tru9I	TTAA	6 cut(s)	63, 251, 1416, 2298, 2325, 2364
TseFI	GTSAC	3 cut(s)	1336, 1914, 2092
Tsp45I	GTSAC	3 cut(s)	1336, 1914, 2092
TspGWI	ACGGA	4 cut(s)	181, 1608, 2080, 2319
TspMI	CCCGGG	1 cut(s)	2714
Tth111I	GACNNNGTC	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	1670
VspI	ATTAAT	2 cut(s)	2325, 2364
XapI	RAATTY	4 cut(s)	887, 1142, 1324, 1906
XbaI	TCTAGA	1 cut(s)	767
XceI	RCATGY	5 cut(s)	239, 317, 1859, 2692, 2728
XcmI	CCANNNNNNNNNTGG	2 cut(s)	866, 2060
XmaI	CCCGGG	1 cut(s)	2714
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	8 cut(s)	102, 768, 846, 915, 1086, 1649, 2213, 2294
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.