Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Forward (+)

20896980 .. 20898367

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCGCGACCACCGCAGCTCCTCCTCCTCCCAAATCCAAACTCAACCCCAAAACCGTGCGCAAAGCCGTCAACGCCCTCCTGAAATGGCGAAACTCCGAGAACCCCGATCTCGTCGACTCCGATGAATTCACCTACCTAGTCCTCACCCTCAACAAAATCCCACCAAAAAGTCGCGTCAACGCCTTCAAAATCCCCCTCCCACATCCCCTCCTCCCCGAATCCACCCAGTTCTGCCTCATCTACGACGACCGCCGAACCTCCAATCTCACCATGGACCTAATCCAAAAGCGCATCAAGTCCCAGAACATACCCATCGCCAAGACACTGAAACTCTCCAAGCTCAAGTCCGACTACAAGTCCTTTGAAGACAAGCGCAAGTTGATGGAGTCGTATGATTGCTTTTTAGCGGATAACCGGATTGTGGAGCTGCTGCCGAGGTGTTTAGGGAAGGTGTTCTACAAGAACAAGAGGATGATTCCGGTGCCGGTGGACTTGGGAAAGAAGGACTGGAAGGGGCAGGTGGATAGTGTTATTGAGTCGGCGATGTTGTCTTTGAGTAGCGGGACTTGCAGTGTGGTGAGAGTGGGGAGGACTTCGATGAGTGGTGAGGAGATTGTGGAGAATGTGGTTGCCGCGGTTGAGGGGATTGTGGAGATTGTTCCGAGGAAGTGGGGCGGCGTGAGGTCGTTTCATTTGAAGCTGTTGGAGTCGTTTGCGCTGCCGGTGTATCAGGCTGTGCCGGATGAGACAATGGAGGGAGGTAAGGGGAGGGAGAGAGAGGTTGTTAAGGATGAGAATAAGGATATGAAGGAGAAGAGGAAGGGTGAGGAAGCAGAGCTTAAGAAAGCTAAGAGGGGTAAGAATGCAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

293

Amino Acids

32.9

Weight (kDa)

9.5

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	41 - 238	3e-43	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	511
Acc16I	TGCGCA	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	3 cut(s)	8, 177, 638
AciI	CCGC	8 cut(s)	6, 15, 253, 410, 564, 636, 638, 678
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	424
AflII	CTTAAG	1 cut(s)	842
AgsI	TTSAA	3 cut(s)	190, 368, 700
AhdI	GACNNNNNGTC	1 cut(s)	358
AluBI	AGCT	6 cut(s)	20, 343, 430, 703, 841, 851
AluI	AGCT	6 cut(s)	20, 343, 430, 703, 841, 851
Alw26I	GTCTC	1 cut(s)	743
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	17, 430, 433, 721, 869
ApoI	RAATTY	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	4 cut(s)	63, 294, 378, 721
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	6 cut(s)	124, 139, 262, 592, 620, 839
AvaII	GGWCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	484
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	29, 417, 420, 708
BccI	CCATC	2 cut(s)	323, 379
BceAI	ACGGC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	1 cut(s)	140
BfrI	CTTAAG	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	8 cut(s)	6, 18, 431, 434, 636, 679, 722, 870
BlsI	GCNGC	8 cut(s)	7, 19, 432, 435, 637, 680, 723, 871
Bme18I	GGWCC	1 cut(s)	277
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	486
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	4 cut(s)	273, 437, 636, 665
BsaWI	WCCGGW	2 cut(s)	417, 481
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse118I	RCCGGY	2 cut(s)	487, 724
Bse1I	ACTGG	2 cut(s)	229, 515
BseDI	CCNNGG	4 cut(s)	273, 437, 636, 665
BseGI	GGATG	4 cut(s)	205, 480, 751, 799
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseNI	ACTGG	2 cut(s)	229, 515
BseRI	GAGGAG	5 cut(s)	12, 15, 18, 203, 626
BseXI	GCAGC	4 cut(s)	29, 417, 420, 708
Bsh1236I	CGCG	3 cut(s)	8, 177, 638
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	5 cut(s)	418, 482, 488, 725, 743
BslFI	GGGAC	2 cut(s)	286, 580
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	2 cut(s)	286, 580
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	8 cut(s)	6, 15, 253, 410, 564, 636, 638, 678
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	3 cut(s)	8, 177, 638
BspLI	GGNNCC	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	842
BsrFI	RCCGGY	2 cut(s)	487, 724
BsrI	ACTGG	2 cut(s)	229, 515
BssAI	RCCGGY	2 cut(s)	487, 724
BssECI	CCNNGG	4 cut(s)	273, 437, 636, 665
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	812
BstAFI	CTTAAG	1 cut(s)	842
BstDEI	CTNAG	1 cut(s)	852
BstDSI	CCRYGG	2 cut(s)	273, 636
BstF5I	GGATG	4 cut(s)	205, 480, 751, 799
BstFNI	CGCG	3 cut(s)	8, 177, 638
BstHHI	GCGC	4 cut(s)	63, 294, 378, 721
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	1 cut(s)	109
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 74, 570
BstUI	CGCG	3 cut(s)	8, 177, 638
BstV1I	GCAGC	4 cut(s)	29, 417, 420, 708
BstV2I	GAAGAC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	273, 636
BtgZI	GCGATG	2 cut(s)	301, 560
BtsCI	GGATG	4 cut(s)	205, 480, 751, 799
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	326, 580
BveI	ACCTGC	1 cut(s)	511
CfoI	GCGC	4 cut(s)	63, 294, 378, 721
Cfr10I	RCCGGY	2 cut(s)	487, 724
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	639
CseI	GACGC	1 cut(s)	166
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	9 cut(s)	5, 20, 68, 343, 430, 703, 737, 841, 851
CviKI_1	RGCY	9 cut(s)	5, 20, 68, 343, 430, 703, 737, 841, 851
DdeI	CTNAG	1 cut(s)	852
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DriI	GACNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	812
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	277
FaiI	YATR	4 cut(s)	275, 311, 396, 809
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	2 cut(s)	286, 580
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	557
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	8 cut(s)	6, 18, 431, 434, 636, 679, 722, 870
FokI	GGATG	4 cut(s)	192, 487, 758, 806
Fsp4HI	GCNGC	8 cut(s)	6, 18, 431, 434, 636, 679, 722, 870
FspBI	CTAG	1 cut(s)	140
FspI	TGCGCA	1 cut(s)	62
GlaI	GCGC	4 cut(s)	62, 293, 377, 720
GluI	GCNGC	8 cut(s)	6, 18, 431, 434, 636, 679, 722, 870
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	418, 482, 488, 725, 743
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	4 cut(s)	63, 294, 378, 721
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	4 cut(s)	61, 292, 376, 719
HinP1I	GCGC	4 cut(s)	61, 292, 376, 719
HincII	GTYRAC	3 cut(s)	73, 118, 181
HindII	GTYRAC	3 cut(s)	73, 118, 181
HinfI	GANTC	6 cut(s)	119, 221, 389, 478, 539, 710
HpaII	CCGG	5 cut(s)	418, 482, 488, 725, 743
HphI	GGTGA	6 cut(s)	124, 139, 262, 592, 620, 839
Hpy166II	GTNNAC	4 cut(s)	73, 118, 181, 493
Hpy188I	TCNGA	4 cut(s)	100, 124, 352, 666
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	4 cut(s)	73, 118, 181, 493
Hpy99I	CGWCG	2 cut(s)	119, 251
HpyAV	CCTTC	6 cut(s)	196, 445, 499, 508, 805, 817
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	573, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 74, 570
HpyF3I	CTNAG	1 cut(s)	852
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	4 cut(s)	61, 292, 376, 719
KspI	CCGCGG	1 cut(s)	639
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	2 cut(s)	25, 427
Lsp1109I	GCAGC	4 cut(s)	29, 417, 420, 708
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	140
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	380, 829
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	4 cut(s)	113, 398, 548, 719
MmeI	TCCRAC	2 cut(s)	375, 687
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	2 cut(s)	789, 843
MspA1I	CMGCKG	1 cut(s)	638
MspCI	CTTAAG	1 cut(s)	842
MspI	CCGG	5 cut(s)	418, 482, 488, 725, 743
Mva1269I	GAATGC	1 cut(s)	871
MvnI	CGCG	3 cut(s)	8, 177, 638
MwoI	GCNNNNNNNGC	3 cut(s)	14, 74, 570
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	462
NsbI	TGCGCA	1 cut(s)	62
PaqCI	CACCTGC	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	221, 478
PkrI	GCNGC	8 cut(s)	7, 19, 432, 435, 637, 680, 723, 871
PleI	GAGTC	4 cut(s)	113, 397, 547, 718
PpsI	GAGTC	4 cut(s)	113, 397, 547, 718
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	277
SacII	CCGCGG	1 cut(s)	639
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	789, 843
SatI	GCNGC	8 cut(s)	6, 18, 431, 434, 636, 679, 722, 870
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	4 cut(s)	113, 398, 548, 719
SfaNI	GCATC	1 cut(s)	303
Sfr303I	CCGCGG	1 cut(s)	639
SgrBI	CCGCGG	1 cut(s)	639
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	344, 842
SmoI	CTYRAG	2 cut(s)	344, 842
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	8 cut(s)	6, 15, 253, 410, 564, 636, 638, 678
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	117, 599
TasI	AATT	1 cut(s)	128
TauI	GCSGC	3 cut(s)	8, 638, 681
TfiI	GAWTC	2 cut(s)	221, 478
Tru1I	TTAA	2 cut(s)	789, 843
Tru9I	TTAA	2 cut(s)	789, 843
TscAI	CASTG	2 cut(s)	333, 580
TseI	GCWGC	5 cut(s)	17, 430, 433, 721, 869
TspDTI	ATGAA	3 cut(s)	141, 683, 824
TspRI	CASTG	2 cut(s)	333, 580
Vha464I	CTTAAG	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.