Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Forward (+)

17765178 .. 17766888

Gene Structure 1711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCAAGAGTAAGTCCCAAGACTGTGGACGATGCAGTTAAGGCTCTGGTCAAAGAGGGAAACGAAAAATCAAGGACGGAGAAGCCACAGCTTCTAGAAGAAGACGGATTCTTTTACCTAGTCGTAGCCCTAAAGAAGATTCCACAGAGGAATTTTACGAACGCTTATCGTATTCCTCTCCCGCATCCGCTAATTAACACTACCGAAGACTCACCGGAGCTCTGTCTCATCATCGACGACAGACCTGAAAGTGGTCTCACCGAGGAAGATGCGAAGAAGAATATCAAATCAGAGAACATACCAATCACGAAAGTTGTTAAGCTTTCGAAGCTGAAATCGGATTATGGATCATTCGAATCGAAACGGAAGCTTTGTGATTCATACGATATGTTTTTCTCAGATCGGAGAGTGATTCCTATGTTGCCAAAATTGATTGGGAAGAAGTTCTTTCAGAGCAAGAAGACTCCTGTGGCTATTGATTTGAAGCATATGAATTGGAAAGAGCAGATTGAGAAAGCTTGTGGTGCTGCTATGTTCTTCATGAGGACTGGGTCTTGTAGTGCGATCAAAGTTGCGAAATTGTCCATGGAAAGCGATGATATCGTTGAGAATGTGACGGCGACTTTGAATGGTGTTGTTGATGTTTTGCCTAGTAGGTGGAAATACATAAGATCTTTGCATTTGAAGTTATCTGAGAGTTTATCTTTGCCATTATATCAGACAGTGCCTTATTTGCAGCTCAAGATTGATCCTTTAGGTGTTGAAGAAGTTAAGAATGGTGAAGGATTAGCTAAAAGTGATGTTGATGATAGTAGTAGTAAGAGTGTGAAGACAAAGAAGAAGAATGGAAAGATTCATGAGGTTAGATATATGGATAGTAATGTATCTGAGACTCTTGGTGATGATGAATTCGATAGGAGTGTTGGAGAAGATGAGGTTGCTGATGATCTCAATGCTTCTGGAGATAAGAAGAAGAGGAAGAAGATGAGTAGTAGTAAGTCTGCAGTGAGTGGGAAACCAGACATTGTGAAGAGTAAGAATGGGCAAAAGTCGAAAAAGCTAAAGAAGGACATTGATGAGTCTGGTGGTGGATTCAAAGCTAAGACTAAGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

372

Amino Acids

41.69

Weight (kDa)

9.3

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	32 - 233	2.2e-46	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	182, 188
AclWI	GGATC	2 cut(s)	355, 743
AcsI	RAATTY	2 cut(s)	151, 908
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	484, 628, 685, 764, 1096
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	230, 260, 884
AlwI	GGATC	2 cut(s)	355, 743
ApeKI	GCWGC	2 cut(s)	527, 736
ApoI	RAATTY	2 cut(s)	151, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	607, 639
Asp700I	GAANNNNTTC	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	204, 250, 791, 911
AsuII	TTCGAA	2 cut(s)	326, 354
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	4 cut(s)	108, 213, 467, 836
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	514, 748
BceAI	ACGGC	1 cut(s)	633
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BcoDI	GTCTC	3 cut(s)	230, 260, 884
BfaI	CTAG	3 cut(s)	95, 119, 651
BfmI	CTRYAG	1 cut(s)	1002
BglII	AGATCT	1 cut(s)	671
BisI	GCNGC	2 cut(s)	528, 737
BlsI	GCNGC	2 cut(s)	529, 738
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	3 cut(s)	22, 193, 259
BmuI	ACTGGG	1 cut(s)	558
BpiI	GAAGAC	4 cut(s)	108, 213, 467, 836
BpmI	CTGGAG	1 cut(s)	981
Bpu14I	TTCGAA	2 cut(s)	326, 354
BpuEI	CTTGAG	1 cut(s)	725
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	261, 585
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	553
BseDI	CCNNGG	2 cut(s)	261, 585
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	3 cut(s)	411, 684, 879
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	514, 748
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	3 cut(s)	230, 260, 884
Bso31I	GGTCTC	1 cut(s)	260
Bsp119I	TTCGAA	2 cut(s)	326, 354
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	6 cut(s)	347, 400, 564, 671, 748, 946
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	2 cut(s)	182, 188
BspCNI	CTCAG	3 cut(s)	410, 685, 880
BspHI	TCATGA	2 cut(s)	540, 856
BspMAI	CTGCAG	1 cut(s)	1006
BspPI	GGATC	2 cut(s)	355, 743
BspT104I	TTCGAA	2 cut(s)	326, 354
BspTNI	GGTCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	261, 585
BssMI	GATC	6 cut(s)	347, 400, 564, 671, 748, 946
BssT1I	CCWWGG	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	25, 724
Bst6I	CTCTTC	2 cut(s)	968, 1025
BstBI	TTCGAA	2 cut(s)	326, 354
BstDEI	CTNAG	5 cut(s)	397, 693, 888, 1101, 1107
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	6 cut(s)	350, 403, 567, 674, 751, 949
BstMAI	GTCTC	3 cut(s)	230, 260, 884
BstMBI	GATC	6 cut(s)	347, 400, 564, 671, 748, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 328, 524, 733
BstSFI	CTRYAG	1 cut(s)	1002
BstV1I	GCAGC	2 cut(s)	514, 748
BstV2I	GAAGAC	4 cut(s)	108, 213, 467, 836
BstX2I	RGATCY	1 cut(s)	671
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	671
BtgI	CCRYGG	1 cut(s)	585
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	2 cut(s)	729, 1011
CciI	TCATGA	2 cut(s)	540, 856
CviAII	CATG	3 cut(s)	541, 586, 857
DdeI	CTNAG	5 cut(s)	397, 693, 888, 1101, 1107
DpnI	GATC	6 cut(s)	349, 402, 566, 673, 750, 948
DpnII	GATC	6 cut(s)	347, 400, 564, 671, 748, 946
Eam1104I	CTCTTC	2 cut(s)	968, 1025
EarI	CTCTTC	2 cut(s)	968, 1025
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	908
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	3 cut(s)	544, 589, 860
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	3 cut(s)	540, 585, 856
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	489
Fnu4HI	GCNGC	2 cut(s)	528, 737
FokI	GGATG	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	528, 737
FspBI	CTAG	3 cut(s)	95, 119, 651
GluI	GCNGC	2 cut(s)	528, 737
GsuI	CTGGAG	1 cut(s)	981
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	3 cut(s)	544, 589, 860
HindIII	AAGCTT	3 cut(s)	320, 368, 516
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	4 cut(s)	204, 250, 791, 911
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	8 cut(s)	292, 340, 400, 405, 453, 694, 720, 889
Hpy188III	TCNNGA	7 cut(s)	6, 95, 307, 541, 742, 857, 960
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	776, 1060
HpyCH4III	ACNGT	2 cut(s)	25, 724
HpyCH4V	TGCA	4 cut(s)	35, 679, 736, 1004
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 328, 524, 733
HpyF3I	CTNAG	5 cut(s)	397, 693, 888, 1101, 1107
Hsp92II	CATG	3 cut(s)	544, 589, 860
Kzo9I	GATC	6 cut(s)	347, 400, 564, 671, 748, 946
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	32, 228, 258, 480, 534, 945, 1032, 1068
Lsp1109I	GCAGC	2 cut(s)	514, 748
LweI	GCATC	3 cut(s)	22, 193, 259
MaeI	CTAG	3 cut(s)	95, 119, 651
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	6 cut(s)	349, 402, 566, 673, 750, 948
MboI	GATC	6 cut(s)	347, 400, 564, 671, 748, 946
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	6 cut(s)	151, 192, 428, 493, 578, 908
MlyI	GAGTC	4 cut(s)	203, 457, 886, 1088
MmeI	TCCRAC	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	4 cut(s)	39, 195, 318, 771
MspI	CCGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	41, 328, 524, 733
NcoI	CCATGG	1 cut(s)	585
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	6 cut(s)	347, 400, 564, 671, 748, 946
NlaIII	CATG	3 cut(s)	544, 589, 860
NmuCI	GTSAC	1 cut(s)	613
NspV	TTCGAA	2 cut(s)	326, 354
PagI	TCATGA	2 cut(s)	540, 856
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	7 cut(s)	108, 139, 356, 377, 412, 853, 1092
PflFI	GACNNNGTC	1 cut(s)	550
PkrI	GCNGC	2 cut(s)	529, 738
PleI	GAGTC	4 cut(s)	203, 457, 886, 1087
PpsI	GAGTC	4 cut(s)	203, 457, 886, 1087
Psp124BI	GAGCTC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	1006
PsuI	RGATCY	1 cut(s)	671
PsyI	GACNNNGTC	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	39, 195, 318, 771
SatI	GCNGC	2 cut(s)	528, 737
Sau3AI	GATC	6 cut(s)	347, 400, 564, 671, 748, 946
SchI	GAGTC	4 cut(s)	203, 457, 886, 1088
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	3 cut(s)	22, 193, 259
SfcI	CTRYAG	1 cut(s)	1002
SfuI	TTCGAA	2 cut(s)	326, 354
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	6 cut(s)	151, 192, 428, 493, 578, 908
SsiI	CCGC	2 cut(s)	182, 188
SspMI	CTAG	3 cut(s)	95, 119, 651
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	25, 724
TaqI	TCGA	6 cut(s)	234, 326, 354, 359, 912, 1052
TasI	AATT	6 cut(s)	151, 192, 428, 493, 578, 908
TfiI	GAWTC	7 cut(s)	108, 139, 356, 377, 412, 853, 1092
Tru1I	TTAA	4 cut(s)	39, 195, 318, 771
Tru9I	TTAA	4 cut(s)	39, 195, 318, 771
TscAI	CASTG	2 cut(s)	729, 1011
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	2 cut(s)	527, 736
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	5 cut(s)	369, 506, 529, 845, 921
TspGWI	ACGGA	3 cut(s)	92, 120, 379
TspRI	CASTG	2 cut(s)	729, 1011
Tth111I	GACNNNGTC	1 cut(s)	550
XapI	RAATTY	2 cut(s)	151, 908
XbaI	TCTAGA	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	3 cut(s)	95, 119, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.