Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011080.1

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Forward (+)

37068 .. 38090

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011080.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggccgcgacccccgcagctcctccaccttccaaatccacacccaccaaactcaaccccaagaccgtacgaaaagccgtcaatgccctcctcaaatggcgaaattcccagacccagaaccccgacgatctcttagactcctccgacgaattcacctacctcgtcctcaccctcaagaaaatcccaccaaagggtcgcgtcaacgccttcaaaatccctctcccaaatcccctcctctccgaattcacccagttctgcctgatctacgacgacggccccaagtccaagctcaccaaggaccaaatcgacaagaggatcaaaacccacaacttacccatcaccaaaacactcaagctctccaagctcaagtccgatcacaagtcttttgaggccaagcggaagctgatggagtcgtatgatgcgtttctggctgataagcagattgtgccgttgcttcccaggcttttggggaagcagttcttcaagaagaagaggatgattccggtgccggtggacttgcaacagaagaactggaaggagcaggtggatagggttatccagtcggcgatgttgttcttgagtactgggacttgtagtgttgtgagggtggccaggacttcgatgagtgctgagcagattgttgagaatgtggttgccgcggttgatgggattgtggagattgttccgaggaattggggcggtgtgaggtcgtttcatttgaagctgttggagtcacttgcgctgccggtgtatcaggctgtgccggatgagacattgttgaagattgagggagttaaggggagtgagaaagaggttgtgaagaatgagaataaggatttgaagaatgagaaagtgggtaagaagaagggtaggattagcgaagtgaggtatatggatagaaatgttggggaggtgcttgatgaggatgagttaggtgatggtgtcattgtcgacaaggagaagaggaagagtgaagacgcaaagctgaagaaagctaagaggagtaagaatgcagcagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

340

Amino Acids

38.29

Weight (kDa)

9.7

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	951
AccII	CGCG	3 cut(s)	8, 198, 659
AciI	CCGC	6 cut(s)	6, 15, 397, 657, 659, 699
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	2 cut(s)	3, 609
AcsI	RAATTY	3 cut(s)	103, 149, 242
AcuI	CTGAAG	1 cut(s)	1007
AfaI	GTAC	2 cut(s)	69, 583
AfiI	CCNNNNNNNGG	2 cut(s)	190, 191
AgsI	TTSAA	5 cut(s)	211, 484, 721, 781, 841
AjnI	CCWGG	2 cut(s)	458, 611
AluBI	AGCT	8 cut(s)	20, 289, 355, 364, 403, 724, 985, 995
AluI	AGCT	8 cut(s)	20, 289, 355, 364, 403, 724, 985, 995
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	4 cut(s)	3, 274, 390, 609
ApeKI	GCWGC	3 cut(s)	17, 742, 1013
ApoI	RAATTY	3 cut(s)	103, 149, 242
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	275, 298
AsuHPI	GGTGA	6 cut(s)	145, 160, 238, 283, 331, 947
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	981
BbvI	GCAGC	2 cut(s)	29, 729
BccI	CCATC	4 cut(s)	344, 400, 659, 932
BceAI	ACGGC	3 cut(s)	62, 289, 433
BciT130I	CCWGG	2 cut(s)	460, 613
BcoDI	GTCTC	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	5 cut(s)	7, 19, 658, 744, 1015
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	460, 613
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	275, 298
BmiI	GGNNCC	2 cut(s)	277, 507
BmrFI	CCNGG	2 cut(s)	460, 613
BmrI	ACTGGG	2 cut(s)	244, 594
BmsI	GCATC	1 cut(s)	409
BmuI	ACTGGG	2 cut(s)	244, 594
BpiI	GAAGAC	1 cut(s)	981
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	4 cut(s)	158, 335, 350, 598
BsaJI	CCNNGG	4 cut(s)	294, 458, 657, 686
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 191
Bse118I	RCCGGY	2 cut(s)	508, 745
Bse1I	ACTGG	4 cut(s)	250, 536, 559, 589
BseBI	CCWGG	2 cut(s)	460, 613
BseDI	CCNNGG	4 cut(s)	294, 458, 657, 686
BseGI	GGATG	3 cut(s)	501, 772, 931
BseLI	CCNNNNNNNGG	2 cut(s)	190, 191
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	4 cut(s)	250, 536, 559, 589
BseRI	GAGGAG	5 cut(s)	12, 80, 130, 224, 1015
BseXI	GCAGC	2 cut(s)	29, 729
Bsh1236I	CGCG	3 cut(s)	8, 198, 659
BshFI	GGCC	4 cut(s)	5, 276, 392, 611
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	4 cut(s)	503, 509, 746, 764
BsiWI	CGTACG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	190, 191
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	1015
BsnI	GGCC	4 cut(s)	5, 276, 392, 611
Bsp143I	GATC	4 cut(s)	127, 261, 315, 373
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	6 cut(s)	6, 15, 397, 657, 659, 699
BspANI	GGCC	4 cut(s)	5, 276, 392, 611
BspCNI	CTCAG	1 cut(s)	622
BspFNI	CGCG	3 cut(s)	8, 198, 659
BspLI	GGNNCC	2 cut(s)	277, 507
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	508, 745
BsrI	ACTGG	4 cut(s)	250, 536, 559, 589
BssAI	RCCGGY	2 cut(s)	508, 745
BssECI	CCNNGG	4 cut(s)	294, 458, 657, 686
BssMI	GATC	4 cut(s)	127, 261, 315, 373
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	460, 613
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	3 cut(s)	485, 956, 962
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstDEI	CTNAG	3 cut(s)	133, 630, 996
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	501, 772, 931
BstFNI	CGCG	3 cut(s)	8, 198, 659
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	4 cut(s)	130, 264, 318, 376
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	4 cut(s)	127, 261, 315, 373
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
BstNI	CCWGG	2 cut(s)	460, 613
BstSCI	CCNGG	2 cut(s)	458, 611
BstUI	CGCG	3 cut(s)	8, 198, 659
BstV1I	GCAGC	2 cut(s)	29, 729
BstV2I	GAAGAC	1 cut(s)	981
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	4 cut(s)	5, 276, 392, 611
BtgI	CCRYGG	1 cut(s)	657
BtgZI	GCGATG	1 cut(s)	581
BtsCI	GGATG	3 cut(s)	501, 772, 931
BveI	ACCTGC	1 cut(s)	532
CfoI	GCGC	1 cut(s)	742
Cfr10I	RCCGGY	2 cut(s)	508, 745
Cfr13I	GGNCC	2 cut(s)	275, 298
Cfr42I	CCGCGG	1 cut(s)	660
CseI	GACGC	2 cut(s)	187, 986
Csp6I	GTAC	2 cut(s)	68, 582
CviQI	GTAC	2 cut(s)	68, 582
DdeI	CTNAG	3 cut(s)	133, 630, 996
DpnI	GATC	4 cut(s)	129, 263, 317, 375
DpnII	GATC	4 cut(s)	127, 261, 315, 373
EaeI	YGGCCR	2 cut(s)	3, 609
Eam1104I	CTCTTC	3 cut(s)	485, 956, 962
EarI	CTCTTC	3 cut(s)	485, 956, 962
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	1007
EcoRI	GAATTC	2 cut(s)	149, 242
EcoRII	CCWGG	2 cut(s)	458, 611
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaiI	YATR	3 cut(s)	417, 891, 893
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	601
FauI	CCCGC	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	951
Fnu4HI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
FokI	GGATG	3 cut(s)	508, 779, 938
Fsp4HI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
HaeIII	GGCC	4 cut(s)	5, 276, 392, 611
HapII	CCGG	4 cut(s)	503, 509, 746, 764
HgaI	GACGC	2 cut(s)	187, 986
HhaI	GCGC	1 cut(s)	742
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	2 cut(s)	202, 952
HindII	GTYRAC	2 cut(s)	202, 952
HinfI	GANTC	4 cut(s)	137, 410, 499, 731
HpaII	CCGG	4 cut(s)	503, 509, 746, 764
HphI	GGTGA	6 cut(s)	145, 160, 238, 283, 331, 947
Hpy166II	GTNNAC	3 cut(s)	202, 514, 952
Hpy188I	TCNGA	4 cut(s)	145, 241, 373, 687
Hpy188III	TCNNGA	3 cut(s)	175, 484, 577
Hpy8I	GTNNAC	3 cut(s)	202, 514, 952
Hpy99I	CGWCG	4 cut(s)	128, 149, 272, 275
HpyAV	CCTTC	4 cut(s)	39, 217, 529, 859
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	520, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
HpyF3I	CTNAG	3 cut(s)	133, 630, 996
HspAI	GCGC	1 cut(s)	740
KspI	CCGCGG	1 cut(s)	660
Kzo9I	GATC	4 cut(s)	127, 261, 315, 373
LmnI	GCTCC	2 cut(s)	25, 538
Lsp1109I	GCAGC	2 cut(s)	29, 729
LweI	GCATC	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	732
MalI	GATC	4 cut(s)	129, 263, 317, 375
MboI	GATC	4 cut(s)	127, 261, 315, 373
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	4 cut(s)	103, 149, 242, 691
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	3 cut(s)	131, 419, 740
MmeI	TCCRAC	2 cut(s)	168, 708
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	1 cut(s)	795
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	4 cut(s)	503, 509, 746, 764
MspR9I	CCNGG	2 cut(s)	460, 613
Mva1269I	GAATGC	1 cut(s)	1015
MvaI	CCWGG	2 cut(s)	460, 613
MvnI	CGCG	3 cut(s)	8, 198, 659
MwoI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
NdeII	GATC	4 cut(s)	127, 261, 315, 373
NlaIV	GGNNCC	2 cut(s)	277, 507
NmuCI	GTSAC	1 cut(s)	732
PaqCI	CACCTGC	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	1015
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	499
Pfl23II	CGTACG	1 cut(s)	67
PkrI	GCNGC	5 cut(s)	7, 19, 658, 744, 1015
PleI	GAGTC	3 cut(s)	131, 418, 739
PpsI	GAGTC	3 cut(s)	131, 418, 739
Psp6I	CCWGG	2 cut(s)	458, 611
PspGI	CCWGG	2 cut(s)	458, 611
PspLI	CGTACG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	277, 507
PspPI	GGNCC	2 cut(s)	275, 298
RsaI	GTAC	2 cut(s)	69, 583
RsaNI	GTAC	2 cut(s)	68, 582
SacII	CCGCGG	1 cut(s)	660
SalI	GTCGAC	1 cut(s)	950
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
Sau3AI	GATC	4 cut(s)	127, 261, 315, 373
Sau96I	GGNCC	2 cut(s)	275, 298
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	3 cut(s)	131, 419, 740
ScrFI	CCNGG	2 cut(s)	460, 613
SfaNI	GCATC	1 cut(s)	409
Sfr303I	CCGCGG	1 cut(s)	660
SgrBI	CCGCGG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	4 cut(s)	173, 350, 365, 577
SmoI	CTYRAG	4 cut(s)	173, 350, 365, 577
Sse9I	AATT	4 cut(s)	103, 149, 242, 691
SsiI	CCGC	6 cut(s)	6, 15, 397, 657, 659, 699
StyD4I	CCNGG	2 cut(s)	458, 611
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	306, 620, 951
TasI	AATT	4 cut(s)	103, 149, 242, 691
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	2 cut(s)	8, 659
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TseFI	GTSAC	1 cut(s)	732
TseI	GCWGC	3 cut(s)	17, 742, 1013
Tsp45I	GTSAC	1 cut(s)	732
TspDTI	ATGAA	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	3 cut(s)	103, 149, 242
XmiI	GTMKAC	1 cut(s)	951
XmnI	GAANNNNTTC	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.