Ribosomal L1 domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06380 AT2G42650 AT3G58660 |
| fragaria_vesca | FvH4_4g16980 FvH4_6g38200 |
| malus_domestica | MD09G1152200.v1.1 MD17G1139700.v1.1 |
| prunus_persica | Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1 |
| pyrus_communis | pycom09g07150 pycom17g13280 |
| rosa_chinensis | RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651 |
| rosa_laevigata | RLG00000007744 RLG00000020550 |
| rosa_multiflora | Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010 |
| rosa_roxburghii | Rroxscaffold_2G00096450 Rroxscaffold_5G00363190 |
| rosa_rugosa | Rorug02G0426100 Rorug04G0165100 |
| rosa_samantha | Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000 |
| rosa_wichuraiana | Rw2G039910 Rw4G019600 Rw4G019620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 529 |
| Acc36I | ACCTGC | 1 cut(s) | 529 |
| AccB1I | GGYRCC | 2 cut(s) | 502, 1190 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1007 |
| AccII | CGCG | 1 cut(s) | 198 |
| AccIII | TCCGGA | 1 cut(s) | 760 |
| AciI | CCGC | 8 cut(s) | 6, 33, 100, 439, 653, 755, 1499, 1669 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1275 |
| AcuI | CTGAAG | 1 cut(s) | 1412 |
| AcyI | GRCGYC | 1 cut(s) | 1191 |
| AfaI | GTAC | 4 cut(s) | 572, 580, 1526, 1661 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 190, 191, 295, 1007, 1527 |
| AflIII | ACRYGT | 1 cut(s) | 587 |
| AgsI | TTSAA | 8 cut(s) | 352, 718, 775, 853, 1078, 1159, 1372, 1612 |
| AjiI | CACGTC | 1 cut(s) | 588 |
| AjnI | CCWGG | 2 cut(s) | 159, 1000 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1113, 1145, 1278, 1310 |
| AluBI | AGCT | 7 cut(s) | 112, 253, 355, 364, 403, 1390, 1487 |
| AluI | AGCT | 7 cut(s) | 112, 253, 355, 364, 403, 1390, 1487 |
| Alw21I | GWGCWC | 2 cut(s) | 255, 522 |
| Aor13HI | TCCGGA | 1 cut(s) | 760 |
| AoxI | GGCC | 4 cut(s) | 3, 321, 390, 1275 |
| ApeKI | GCWGC | 6 cut(s) | 112, 454, 1418, 1481, 1484, 1651 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 476, 1125 |
| AspLEI | GCGC | 2 cut(s) | 22, 1193 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| AsuHPI | GGTGA | 8 cut(s) | 49, 79, 610, 829, 968, 1064, 1076, 1145 |
| AsuII | TTCGAA | 1 cut(s) | 359 |
| AvaII | GGWCC | 1 cut(s) | 275 |
| BaeGI | GKGCMC | 2 cut(s) | 384, 1379 |
| BanI | GGYRCC | 2 cut(s) | 502, 1190 |
| BanII | GRGCYC | 1 cut(s) | 255 |
| Bbv12I | GWGCWC | 2 cut(s) | 255, 522 |
| BbvI | GCAGC | 6 cut(s) | 99, 441, 1430, 1468, 1496, 1638 |
| BccI | CCATC | 4 cut(s) | 656, 1208, 1462, 1588 |
| BceAI | ACGGC | 4 cut(s) | 62, 433, 1204, 1621 |
| BciT130I | CCWGG | 2 cut(s) | 161, 1002 |
| BfmI | CTRYAG | 3 cut(s) | 15, 113, 1482 |
| BfoI | RGCGCY | 2 cut(s) | 23, 1194 |
| BfuAI | ACCTGC | 1 cut(s) | 529 |
| Bme1390I | CCNGG | 2 cut(s) | 161, 1002 |
| Bme18I | GGWCC | 1 cut(s) | 275 |
| BmgBI | CACGTC | 1 cut(s) | 588 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmiI | GGNNCC | 5 cut(s) | 277, 504, 759, 1192, 1503 |
| BmrFI | CCNGG | 2 cut(s) | 161, 1002 |
| BmrI | ACTGGG | 1 cut(s) | 700 |
| BmsI | GCATC | 2 cut(s) | 1093, 1573 |
| BmuI | ACTGGG | 1 cut(s) | 700 |
| BoxI | GACNNNNGTC | 1 cut(s) | 273 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1089 |
| Bpu14I | TTCGAA | 1 cut(s) | 359 |
| BpuEI | CTTGAG | 3 cut(s) | 158, 350, 595 |
| Bsa29I | ATCGAT | 1 cut(s) | 53 |
| BsaAI | YACGTR | 1 cut(s) | 379 |
| BsaHI | GRCGYC | 1 cut(s) | 1191 |
| BsaWI | WCCGGW | 3 cut(s) | 499, 760, 1527 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 190, 191, 295, 1007, 1527 |
| Bse1I | ACTGG | 3 cut(s) | 506, 695, 743 |
| Bse3DI | GCAATG | 4 cut(s) | 737, 919, 1470, 1646 |
| BseAI | TCCGGA | 1 cut(s) | 760 |
| BseBI | CCWGG | 2 cut(s) | 161, 1002 |
| BseCI | ATCGAT | 1 cut(s) | 53 |
| BseGI | GGATG | 1 cut(s) | 769 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 190, 191, 295, 1007, 1527 |
| BseMI | GCAATG | 4 cut(s) | 737, 919, 1470, 1646 |
| BseMII | CTCAG | 1 cut(s) | 1098 |
| BseNI | ACTGG | 3 cut(s) | 506, 695, 743 |
| BseRI | GAGGAG | 3 cut(s) | 827, 1439, 1494 |
| BseSI | GKGCMC | 2 cut(s) | 384, 1379 |
| BseXI | GCAGC | 6 cut(s) | 99, 441, 1430, 1468, 1496, 1638 |
| BsgI | GTGCAG | 3 cut(s) | 828, 1597, 1627 |
| Bsh1236I | CGCG | 1 cut(s) | 198 |
| BshFI | GGCC | 4 cut(s) | 5, 323, 392, 1277 |
| BshNI | GGYRCC | 2 cut(s) | 502, 1190 |
| BshVI | ATCGAT | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 2 cut(s) | 255, 522 |
| BsiSI | CCGG | 3 cut(s) | 500, 761, 1528 |
| BslFI | GGGAC | 2 cut(s) | 261, 598 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 190, 191, 295, 1007, 1527 |
| BsmFI | GGGAC | 2 cut(s) | 261, 598 |
| BsnI | GGCC | 4 cut(s) | 5, 323, 392, 1277 |
| Bsp119I | TTCGAA | 1 cut(s) | 359 |
| Bsp1286I | GDGCHC | 4 cut(s) | 255, 384, 522, 1379 |
| Bsp13I | TCCGGA | 1 cut(s) | 760 |
| Bsp143I | GATC | 2 cut(s) | 54, 130 |
| BspACI | CCGC | 8 cut(s) | 6, 33, 100, 439, 653, 755, 1499, 1669 |
| BspANI | GGCC | 4 cut(s) | 5, 323, 392, 1277 |
| BspCNI | CTCAG | 1 cut(s) | 1099 |
| BspDI | ATCGAT | 1 cut(s) | 53 |
| BspEI | TCCGGA | 1 cut(s) | 760 |
| BspFNI | CGCG | 1 cut(s) | 198 |
| BspHI | TCATGA | 1 cut(s) | 889 |
| BspLI | GGNNCC | 5 cut(s) | 277, 504, 759, 1192, 1503 |
| BspMAI | CTGCAG | 2 cut(s) | 117, 1486 |
| BspMI | ACCTGC | 1 cut(s) | 529 |
| BspT104I | TTCGAA | 1 cut(s) | 359 |
| BspT107I | GGYRCC | 2 cut(s) | 502, 1190 |
| BsrDI | GCAATG | 4 cut(s) | 737, 919, 1470, 1646 |
| BsrI | ACTGG | 3 cut(s) | 506, 695, 743 |
| BssMI | GATC | 2 cut(s) | 54, 130 |
| BssNI | GRCGYC | 1 cut(s) | 1191 |
| Bst2UI | CCWGG | 2 cut(s) | 161, 1002 |
| Bst4CI | ACNGT | 5 cut(s) | 67, 275, 337, 1145, 1608 |
| BstACI | GRCGYC | 1 cut(s) | 1191 |
| BstBAI | YACGTR | 1 cut(s) | 379 |
| BstBI | TTCGAA | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 2 cut(s) | 735, 1588 |
| BstDEI | CTNAG | 5 cut(s) | 294, 1059, 1089, 1107, 1401 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 1 cut(s) | 769 |
| BstFNI | CGCG | 1 cut(s) | 198 |
| BstH2I | RGCGCY | 2 cut(s) | 23, 1194 |
| BstHHI | GCGC | 2 cut(s) | 22, 1193 |
| BstKTI | GATC | 2 cut(s) | 57, 133 |
| BstMBI | GATC | 2 cut(s) | 54, 130 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 83, 361, 445, 454, 739, 918 |
| BstNI | CCWGG | 2 cut(s) | 161, 1002 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 273 |
| BstSCI | CCNGG | 2 cut(s) | 159, 1000 |
| BstSFI | CTRYAG | 3 cut(s) | 15, 113, 1482 |
| BstSLI | GKGCMC | 2 cut(s) | 384, 1379 |
| BstUI | CGCG | 1 cut(s) | 198 |
| BstV1I | GCAGC | 6 cut(s) | 99, 441, 1430, 1468, 1496, 1638 |
| Bsu15I | ATCGAT | 1 cut(s) | 53 |
| BsuRI | GGCC | 4 cut(s) | 5, 323, 392, 1277 |
| BsuTUI | ATCGAT | 1 cut(s) | 53 |
| BtrI | CACGTC | 1 cut(s) | 588 |
| BtsCI | GGATG | 1 cut(s) | 769 |
| BtsI | GCAGTG | 1 cut(s) | 1585 |
| BtsIMutI | CAGTG | 4 cut(s) | 513, 1150, 1585, 1604 |
| BveI | ACCTGC | 1 cut(s) | 529 |
| Cac8I | GCNNGC | 2 cut(s) | 735, 1588 |
| CciI | TCATGA | 1 cut(s) | 889 |
| CfoI | GCGC | 2 cut(s) | 22, 1193 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| ClaI | ATCGAT | 1 cut(s) | 53 |
| CseI | GACGC | 3 cut(s) | 187, 1253, 1469 |
| CsiI | ACCWGGT | 2 cut(s) | 159, 1000 |
| Csp6I | GTAC | 4 cut(s) | 571, 579, 1525, 1660 |
| CviAII | CATG | 2 cut(s) | 890, 1508 |
| CviQI | GTAC | 4 cut(s) | 571, 579, 1525, 1660 |
| DdeI | CTNAG | 5 cut(s) | 294, 1059, 1089, 1107, 1401 |
| DinI | GGCGCC | 1 cut(s) | 1192 |
| DpnI | GATC | 2 cut(s) | 56, 132 |
| DpnII | GATC | 2 cut(s) | 54, 130 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1275 |
| EciI | GGCGGA | 2 cut(s) | 22, 115 |
| Ecl136II | GAGCTC | 1 cut(s) | 253 |
| Eco24I | GRGCYC | 1 cut(s) | 255 |
| Eco47I | GGWCC | 1 cut(s) | 275 |
| Eco53kI | GAGCTC | 1 cut(s) | 253 |
| Eco57I | CTGAAG | 1 cut(s) | 1412 |
| EcoICRI | GAGCTC | 1 cut(s) | 253 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 293 |
| EcoRII | CCWGG | 2 cut(s) | 159, 1000 |
| EcoT38I | GRGCYC | 1 cut(s) | 255 |
| EgeI | GGCGCC | 1 cut(s) | 1192 |
| EheI | GGCGCC | 1 cut(s) | 1192 |
| FaeI | CATG | 2 cut(s) | 893, 1511 |
| FaiI | YATR | 8 cut(s) | 17, 263, 265, 332, 417, 422, 891, 1509 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 464, 496 |
| FaqI | GGGAC | 2 cut(s) | 261, 598 |
| FatI | CATG | 2 cut(s) | 889, 1507 |
| FokI | GGATG | 1 cut(s) | 776 |
| FriOI | GRGCYC | 1 cut(s) | 255 |
| GlaI | GCGC | 2 cut(s) | 21, 1192 |
| HaeII | RGCGCY | 2 cut(s) | 23, 1194 |
| HaeIII | GGCC | 4 cut(s) | 5, 323, 392, 1277 |
| HapII | CCGG | 3 cut(s) | 500, 761, 1528 |
| HgaI | GACGC | 3 cut(s) | 187, 1253, 1469 |
| HhaI | GCGC | 2 cut(s) | 22, 1193 |
| Hin1I | GRCGYC | 1 cut(s) | 1191 |
| Hin1II | CATG | 2 cut(s) | 893, 1511 |
| Hin6I | GCGC | 2 cut(s) | 20, 1191 |
| HinP1I | GCGC | 2 cut(s) | 20, 1191 |
| HincII | GTYRAC | 1 cut(s) | 202 |
| HindII | GTYRAC | 1 cut(s) | 202 |
| HindIII | AAGCTT | 1 cut(s) | 353 |
| HinfI | GANTC | 9 cut(s) | 140, 496, 728, 886, 1055, 1289, 1325, 1430, 1549 |
| HpaII | CCGG | 3 cut(s) | 500, 761, 1528 |
| HphI | GGTGA | 8 cut(s) | 49, 79, 610, 829, 968, 1064, 1076, 1145 |
| Hpy166II | GTNNAC | 3 cut(s) | 82, 202, 511 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 250, 1546 |
| Hpy188III | TCNNGA | 7 cut(s) | 175, 307, 349, 367, 761, 890, 1201 |
| Hpy8I | GTNNAC | 3 cut(s) | 82, 202, 511 |
| Hpy99I | CGWCG | 2 cut(s) | 272, 275 |
| HpyCH4III | ACNGT | 5 cut(s) | 67, 275, 337, 1145, 1608 |
| HpyCH4IV | ACGT | 2 cut(s) | 378, 587 |
| HpyCH4V | TGCA | 6 cut(s) | 115, 737, 809, 1484, 1578, 1644 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 83, 361, 445, 454, 739, 918 |
| HpyF3I | CTNAG | 5 cut(s) | 294, 1059, 1089, 1107, 1401 |
| HpySE526I | ACGT | 2 cut(s) | 378, 587 |
| Hsp92I | GRCGYC | 1 cut(s) | 1191 |
| Hsp92II | CATG | 2 cut(s) | 893, 1511 |
| HspAI | GCGC | 2 cut(s) | 20, 1191 |
| KasI | GGCGCC | 1 cut(s) | 1190 |
| Kpn2I | TCCGGA | 1 cut(s) | 760 |
| Kzo9I | GATC | 2 cut(s) | 54, 130 |
| LmnI | GCTCC | 4 cut(s) | 517, 535, 1492, 1507 |
| Lsp1109I | GCAGC | 6 cut(s) | 99, 441, 1430, 1468, 1496, 1638 |
| LweI | GCATC | 2 cut(s) | 1093, 1573 |
| MabI | ACCWGGT | 2 cut(s) | 159, 1000 |
| MaeII | ACGT | 2 cut(s) | 378, 587 |
| MaeIII | GTNAC | 1 cut(s) | 766 |
| MalI | GATC | 2 cut(s) | 56, 132 |
| MboI | GATC | 2 cut(s) | 54, 130 |
| MhlI | GDGCHC | 4 cut(s) | 255, 384, 522, 1379 |
| MluCI | AATT | 3 cut(s) | 526, 941, 1013 |
| Mly113I | GGCGCC | 1 cut(s) | 1191 |
| MlyI | GAGTC | 3 cut(s) | 1064, 1298, 1334 |
| MmeI | TCCRAC | 4 cut(s) | 309, 705, 1276, 1514 |
| MroI | TCCGGA | 1 cut(s) | 760 |
| MroXI | GAANNNNTTC | 2 cut(s) | 476, 1125 |
| MseI | TTAA | 4 cut(s) | 483, 831, 1112, 1565 |
| MslI | CAYNNNNRTG | 1 cut(s) | 335 |
| MspI | CCGG | 3 cut(s) | 500, 761, 1528 |
| MspR9I | CCNGG | 2 cut(s) | 161, 1002 |
| MvaI | CCWGG | 2 cut(s) | 161, 1002 |
| MvnI | CGCG | 1 cut(s) | 198 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 83, 361, 445, 454, 739, 918 |
| NarI | GGCGCC | 1 cut(s) | 1191 |
| NdeII | GATC | 2 cut(s) | 54, 130 |
| NlaIII | CATG | 2 cut(s) | 893, 1511 |
| NlaIV | GGNNCC | 5 cut(s) | 277, 504, 759, 1192, 1503 |
| NmuCI | GTSAC | 1 cut(s) | 766 |
| NspV | TTCGAA | 1 cut(s) | 359 |
| PagI | TCATGA | 1 cut(s) | 889 |
| PaqCI | CACCTGC | 1 cut(s) | 529 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1091 |
| PdmI | GAANNNNTTC | 2 cut(s) | 476, 1125 |
| PfeI | GAWTC | 6 cut(s) | 140, 496, 728, 886, 1430, 1549 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1007 |
| PleI | GAGTC | 3 cut(s) | 1063, 1297, 1333 |
| PluTI | GGCGCC | 1 cut(s) | 1194 |
| PpsI | GAGTC | 3 cut(s) | 1063, 1297, 1333 |
| Ppu21I | YACGTR | 1 cut(s) | 379 |
| PshAI | GACNNNNGTC | 1 cut(s) | 273 |
| Psp124BI | GAGCTC | 1 cut(s) | 255 |
| Psp6I | CCWGG | 2 cut(s) | 159, 1000 |
| PspGI | CCWGG | 2 cut(s) | 159, 1000 |
| PspN4I | GGNNCC | 5 cut(s) | 277, 504, 759, 1192, 1503 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| PstI | CTGCAG | 2 cut(s) | 117, 1486 |
| RsaI | GTAC | 4 cut(s) | 572, 580, 1526, 1661 |
| RsaNI | GTAC | 4 cut(s) | 571, 579, 1525, 1660 |
| RseI | CAYNNNNRTG | 1 cut(s) | 335 |
| SacI | GAGCTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 4 cut(s) | 483, 831, 1112, 1565 |
| Sau3AI | GATC | 2 cut(s) | 54, 130 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| SchI | GAGTC | 3 cut(s) | 1064, 1298, 1334 |
| ScrFI | CCNGG | 2 cut(s) | 161, 1002 |
| SduI | GDGCHC | 4 cut(s) | 255, 384, 522, 1379 |
| SexAI | ACCWGGT | 2 cut(s) | 159, 1000 |
| SfaNI | GCATC | 2 cut(s) | 1093, 1573 |
| SfcI | CTRYAG | 3 cut(s) | 15, 113, 1482 |
| SfoI | GGCGCC | 1 cut(s) | 1192 |
| SfuI | TTCGAA | 1 cut(s) | 359 |
| SinI | GGWCC | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 335 |
| SmlI | CTYRAG | 3 cut(s) | 173, 365, 574 |
| SmoI | CTYRAG | 3 cut(s) | 173, 365, 574 |
| Sse9I | AATT | 3 cut(s) | 526, 941, 1013 |
| SsiI | CCGC | 8 cut(s) | 6, 33, 100, 439, 653, 755, 1499, 1669 |
| SspDI | GGCGCC | 1 cut(s) | 1190 |
| SstI | GAGCTC | 1 cut(s) | 255 |
| StyD4I | CCNGG | 2 cut(s) | 159, 1000 |
| TaaI | ACNGT | 5 cut(s) | 67, 275, 337, 1145, 1608 |
| TaiI | ACGT | 2 cut(s) | 381, 590 |
| TaqI | TCGA | 5 cut(s) | 53, 306, 341, 359, 617 |
| TasI | AATT | 3 cut(s) | 526, 941, 1013 |
| TatI | WGTACW | 3 cut(s) | 570, 578, 1659 |
| TauI | GCSGC | 4 cut(s) | 8, 656, 1502, 1671 |
| TfiI | GAWTC | 6 cut(s) | 140, 496, 728, 886, 1430, 1549 |
| Tru1I | TTAA | 4 cut(s) | 483, 831, 1112, 1565 |
| Tru9I | TTAA | 4 cut(s) | 483, 831, 1112, 1565 |
| TscAI | CASTG | 4 cut(s) | 513, 1150, 1585, 1611 |
| TseFI | GTSAC | 1 cut(s) | 766 |
| TseI | GCWGC | 6 cut(s) | 112, 454, 1418, 1481, 1484, 1651 |
| Tsp45I | GTSAC | 1 cut(s) | 766 |
| TspDTI | ATGAA | 7 cut(s) | 292, 701, 878, 906, 954, 1011, 1377 |
| TspGWI | ACGGA | 1 cut(s) | 1282 |
| TspRI | CASTG | 4 cut(s) | 513, 1150, 1585, 1611 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1007 |
| VpaK11BI | GGWCC | 1 cut(s) | 275 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 293 |
| XmnI | GAANNNNTTC | 2 cut(s) | 476, 1125 |