pycom09g07150

Ribosomal L1 domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
5362821 .. 5368765
5945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07150.2

Sequence Viewer

Length: 1674 bp
ATGGCCGCCACCACTATAGCGCCTCCACCTTCCGCCACAAAACCCACCAAATCGATCACCAAGACGGTGAGGAAAGCCGTAAACGCCCTCATCAAATGGCGGAACGACAAGCTGCAGACCCAGAACCCCGATCTCTTGGAATCTGACGAGTTCGCCTACCTGGTTCTTACCCTCAAGAAAATCCCCCCAAAGGGTCGCGTCAACGCCTACAAAATCCCCCTCCCAAATCCCCTCCATTCCCAACTCTCCGAGCTCTGCCTCATATACGACGACGGTCCCAAGTCCAACCTCACTAAGGACTTCATCGAGAAGAAAATCAAGGCCGAAAACATAACCGTGTCGAAAATCTTGAAGCTTTCGAAGCTCAAGAGCGATTACGTGCCCTTTGAGGCCAAGAGGAAGCTGATGTATTCGTATGATATGTTTCTGGCTGATAAGCGGATTGTGCCGTTGCTGCCAAAGTTTTTGGGGAAGCATTTCTTTAAGAAGAAGAAGATTCCGGTGCCAGTGGACTTGGAGCACAAGAATTGGAAGGAGCAGGTGGATAAGATTTGTGGGTCGGCTTTGTTGTACTTGAGTACAGGGACGTGTAGCGTGGTGAGGGTAGCGAAGGTTTCGATGAGCGTTGATGAGATTGTGGCGAATGTGGTTGCGGCGATTGATGGGATTGTGGAGATTGTGCCTAAAAACTGGGGAGGTGTGAGGTCTTTTCATTTGAAGTTGTTGGAATCGCTTGCATTGCCAGTTTATCAGGCGGTTCCGGATGTGACATTGAAGATTGAGGAAGAGAAGGGTGTTGAGGAAGGTGCAGAGGAGGTGAAGGAGGTTGTTAAGAATGAGAGTAAGGATTTGAAGAGTGAGAAGAAGAGTAAGAAGAAGGGTAGGATTCATGAAGTGAGATATTTGGATAGCAATGTCAGCGAGGTGCTTGATGATGATGAATTGGGTATTGTTGGTGATGTGGATATTGGGGAAGGGAAGCAGAGCGAGAATGATGAACCAGGTAGTGGCGAATTGGGGAAGAAGAAGAGGAAGAAGGAAAAGGTTGGTGGTGAGTCTAAGGGTGAGAAAAGGTTGAAGAAGTCGGCTAAGGCGAAAGATGATGCTGAGTTAAATGGGGAAAAGGTTCTTGGTGAGAAAAACAGTGAGAAGAAGTTGAAAAGGTCGGCAAAGGCAGAAGAAGAGGACGGCGCCATTGTCAAGAATGAGAAAGATGGGTTGTCTTGGAAAGAGAAGAAAAAAGACGCTACAAAGAAGAAAGCAGATGATTTGTCGGCCAAAGGCGAAGAGTCCGTTGGAAAGAAGGAGAAGAGGAAGAGTGAAGAGTCTGCTGGAAAGAAGGAGAAGAGGAAGAGTGAAGATGAAAAGTTGAAGGGCACAGAAGCAAAGCTGAAGAAGTCTAAGAGAAGTAAGAAAGCAGCAGAGGAGGAATCAAATCAAGGGAAAAAAAGACAAAAGGACGCAATGATGGTAGTTGTTGCTGCAGCTCCAACCCAAGCGGCTCCTCATGGCTCTTGTTCCTCGTACCGGAGGCACATCTCATCGGAGATTCGTTTCCACTCCTTAACAAGAGGGTGCAGTGATGCTTGCTTGATGGACTTCGCACTGTTCAAGTTTCACGCAGGAGTAAAATCGCCGTTCTGCACATTGCTGCTGGAGTACAATAGCCGCTAA

Protein Analysis

558

Amino Acids

62.07

Weight (kDa)

9.44

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
Acc36I ACCTGC 1 cut(s) 529
AccB1I GGYRCC 2 cut(s) 502, 1190
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccII CGCG 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 8 cut(s) 6, 33, 100, 439, 653, 755, 1499, 1669
AcoI YGGCCR 2 cut(s) 3, 1275
AcuI CTGAAG 1 cut(s) 1412
AcyI GRCGYC 1 cut(s) 1191
AfaI GTAC 4 cut(s) 572, 580, 1526, 1661
AfiI CCNNNNNNNGG 5 cut(s) 190, 191, 295, 1007, 1527
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 8 cut(s) 352, 718, 775, 853, 1078, 1159, 1372, 1612
AjiI CACGTC 1 cut(s) 588
AjnI CCWGG 2 cut(s) 159, 1000
AjuI GAANNNNNNNTTGG 4 cut(s) 1113, 1145, 1278, 1310
AluBI AGCT 7 cut(s) 112, 253, 355, 364, 403, 1390, 1487
AluI AGCT 7 cut(s) 112, 253, 355, 364, 403, 1390, 1487
Alw21I GWGCWC 2 cut(s) 255, 522
Aor13HI TCCGGA 1 cut(s) 760
AoxI GGCC 4 cut(s) 3, 321, 390, 1275
ApeKI GCWGC 6 cut(s) 112, 454, 1418, 1481, 1484, 1651
Asp700I GAANNNNTTC 2 cut(s) 476, 1125
AspLEI GCGC 2 cut(s) 22, 1193
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 8 cut(s) 49, 79, 610, 829, 968, 1064, 1076, 1145
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 2 cut(s) 384, 1379
BanI GGYRCC 2 cut(s) 502, 1190
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 522
BbvI GCAGC 6 cut(s) 99, 441, 1430, 1468, 1496, 1638
BccI CCATC 4 cut(s) 656, 1208, 1462, 1588
BceAI ACGGC 4 cut(s) 62, 433, 1204, 1621
BciT130I CCWGG 2 cut(s) 161, 1002
BfmI CTRYAG 3 cut(s) 15, 113, 1482
BfoI RGCGCY 2 cut(s) 23, 1194
BfuAI ACCTGC 1 cut(s) 529
Bme1390I CCNGG 2 cut(s) 161, 1002
Bme18I GGWCC 1 cut(s) 275
BmgBI CACGTC 1 cut(s) 588
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 5 cut(s) 277, 504, 759, 1192, 1503
BmrFI CCNGG 2 cut(s) 161, 1002
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 2 cut(s) 1093, 1573
BmuI ACTGGG 1 cut(s) 700
BoxI GACNNNNGTC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 1089
Bpu14I TTCGAA 1 cut(s) 359
BpuEI CTTGAG 3 cut(s) 158, 350, 595
Bsa29I ATCGAT 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 1191
BsaWI WCCGGW 3 cut(s) 499, 760, 1527
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 191, 295, 1007, 1527
Bse1I ACTGG 3 cut(s) 506, 695, 743
Bse3DI GCAATG 4 cut(s) 737, 919, 1470, 1646
BseAI TCCGGA 1 cut(s) 760
BseBI CCWGG 2 cut(s) 161, 1002
BseCI ATCGAT 1 cut(s) 53
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 5 cut(s) 190, 191, 295, 1007, 1527
BseMI GCAATG 4 cut(s) 737, 919, 1470, 1646
BseMII CTCAG 1 cut(s) 1098
BseNI ACTGG 3 cut(s) 506, 695, 743
BseRI GAGGAG 3 cut(s) 827, 1439, 1494
BseSI GKGCMC 2 cut(s) 384, 1379
BseXI GCAGC 6 cut(s) 99, 441, 1430, 1468, 1496, 1638
BsgI GTGCAG 3 cut(s) 828, 1597, 1627
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 4 cut(s) 5, 323, 392, 1277
BshNI GGYRCC 2 cut(s) 502, 1190
BshVI ATCGAT 1 cut(s) 53
BsiHKAI GWGCWC 2 cut(s) 255, 522
BsiSI CCGG 3 cut(s) 500, 761, 1528
BslFI GGGAC 2 cut(s) 261, 598
BslI CCNNNNNNNGG 5 cut(s) 190, 191, 295, 1007, 1527
BsmFI GGGAC 2 cut(s) 261, 598
BsnI GGCC 4 cut(s) 5, 323, 392, 1277
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 4 cut(s) 255, 384, 522, 1379
Bsp13I TCCGGA 1 cut(s) 760
Bsp143I GATC 2 cut(s) 54, 130
BspACI CCGC 8 cut(s) 6, 33, 100, 439, 653, 755, 1499, 1669
BspANI GGCC 4 cut(s) 5, 323, 392, 1277
BspCNI CTCAG 1 cut(s) 1099
BspDI ATCGAT 1 cut(s) 53
BspEI TCCGGA 1 cut(s) 760
BspFNI CGCG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 5 cut(s) 277, 504, 759, 1192, 1503
BspMAI CTGCAG 2 cut(s) 117, 1486
BspMI ACCTGC 1 cut(s) 529
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 2 cut(s) 502, 1190
BsrDI GCAATG 4 cut(s) 737, 919, 1470, 1646
BsrI ACTGG 3 cut(s) 506, 695, 743
BssMI GATC 2 cut(s) 54, 130
BssNI GRCGYC 1 cut(s) 1191
Bst2UI CCWGG 2 cut(s) 161, 1002
Bst4CI ACNGT 5 cut(s) 67, 275, 337, 1145, 1608
BstACI GRCGYC 1 cut(s) 1191
BstBAI YACGTR 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 735, 1588
BstDEI CTNAG 5 cut(s) 294, 1059, 1089, 1107, 1401
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 1 cut(s) 198
BstH2I RGCGCY 2 cut(s) 23, 1194
BstHHI GCGC 2 cut(s) 22, 1193
BstKTI GATC 2 cut(s) 57, 133
BstMBI GATC 2 cut(s) 54, 130
BstMWI GCNNNNNNNGC 6 cut(s) 83, 361, 445, 454, 739, 918
BstNI CCWGG 2 cut(s) 161, 1002
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 159, 1000
BstSFI CTRYAG 3 cut(s) 15, 113, 1482
BstSLI GKGCMC 2 cut(s) 384, 1379
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 6 cut(s) 99, 441, 1430, 1468, 1496, 1638
Bsu15I ATCGAT 1 cut(s) 53
BsuRI GGCC 4 cut(s) 5, 323, 392, 1277
BsuTUI ATCGAT 1 cut(s) 53
BtrI CACGTC 1 cut(s) 588
BtsCI GGATG 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 1585
BtsIMutI CAGTG 4 cut(s) 513, 1150, 1585, 1604
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 735, 1588
CciI TCATGA 1 cut(s) 889
CfoI GCGC 2 cut(s) 22, 1193
Cfr13I GGNCC 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 53
CseI GACGC 3 cut(s) 187, 1253, 1469
CsiI ACCWGGT 2 cut(s) 159, 1000
Csp6I GTAC 4 cut(s) 571, 579, 1525, 1660
CviAII CATG 2 cut(s) 890, 1508
CviQI GTAC 4 cut(s) 571, 579, 1525, 1660
DdeI CTNAG 5 cut(s) 294, 1059, 1089, 1107, 1401
DinI GGCGCC 1 cut(s) 1192
DpnI GATC 2 cut(s) 56, 132
DpnII GATC 2 cut(s) 54, 130
EaeI YGGCCR 2 cut(s) 3, 1275
EciI GGCGGA 2 cut(s) 22, 115
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 1412
EcoICRI GAGCTC 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 159, 1000
EcoT38I GRGCYC 1 cut(s) 255
EgeI GGCGCC 1 cut(s) 1192
EheI GGCGCC 1 cut(s) 1192
FaeI CATG 2 cut(s) 893, 1511
FaiI YATR 8 cut(s) 17, 263, 265, 332, 417, 422, 891, 1509
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 2 cut(s) 261, 598
FatI CATG 2 cut(s) 889, 1507
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 255
GlaI GCGC 2 cut(s) 21, 1192
HaeII RGCGCY 2 cut(s) 23, 1194
HaeIII GGCC 4 cut(s) 5, 323, 392, 1277
HapII CCGG 3 cut(s) 500, 761, 1528
HgaI GACGC 3 cut(s) 187, 1253, 1469
HhaI GCGC 2 cut(s) 22, 1193
Hin1I GRCGYC 1 cut(s) 1191
Hin1II CATG 2 cut(s) 893, 1511
Hin6I GCGC 2 cut(s) 20, 1191
HinP1I GCGC 2 cut(s) 20, 1191
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 9 cut(s) 140, 496, 728, 886, 1055, 1289, 1325, 1430, 1549
HpaII CCGG 3 cut(s) 500, 761, 1528
HphI GGTGA 8 cut(s) 49, 79, 610, 829, 968, 1064, 1076, 1145
Hpy166II GTNNAC 3 cut(s) 82, 202, 511
Hpy188I TCNGA 3 cut(s) 145, 250, 1546
Hpy188III TCNNGA 7 cut(s) 175, 307, 349, 367, 761, 890, 1201
Hpy8I GTNNAC 3 cut(s) 82, 202, 511
Hpy99I CGWCG 2 cut(s) 272, 275
HpyCH4III ACNGT 5 cut(s) 67, 275, 337, 1145, 1608
HpyCH4IV ACGT 2 cut(s) 378, 587
HpyCH4V TGCA 6 cut(s) 115, 737, 809, 1484, 1578, 1644
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 361, 445, 454, 739, 918
HpyF3I CTNAG 5 cut(s) 294, 1059, 1089, 1107, 1401
HpySE526I ACGT 2 cut(s) 378, 587
Hsp92I GRCGYC 1 cut(s) 1191
Hsp92II CATG 2 cut(s) 893, 1511
HspAI GCGC 2 cut(s) 20, 1191
KasI GGCGCC 1 cut(s) 1190
Kpn2I TCCGGA 1 cut(s) 760
Kzo9I GATC 2 cut(s) 54, 130
LmnI GCTCC 4 cut(s) 517, 535, 1492, 1507
Lsp1109I GCAGC 6 cut(s) 99, 441, 1430, 1468, 1496, 1638
LweI GCATC 2 cut(s) 1093, 1573
MabI ACCWGGT 2 cut(s) 159, 1000
MaeII ACGT 2 cut(s) 378, 587
MaeIII GTNAC 1 cut(s) 766
MalI GATC 2 cut(s) 56, 132
MboI GATC 2 cut(s) 54, 130
MhlI GDGCHC 4 cut(s) 255, 384, 522, 1379
MluCI AATT 3 cut(s) 526, 941, 1013
Mly113I GGCGCC 1 cut(s) 1191
MlyI GAGTC 3 cut(s) 1064, 1298, 1334
MmeI TCCRAC 4 cut(s) 309, 705, 1276, 1514
MroI TCCGGA 1 cut(s) 760
MroXI GAANNNNTTC 2 cut(s) 476, 1125
MseI TTAA 4 cut(s) 483, 831, 1112, 1565
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 3 cut(s) 500, 761, 1528
MspR9I CCNGG 2 cut(s) 161, 1002
MvaI CCWGG 2 cut(s) 161, 1002
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 6 cut(s) 83, 361, 445, 454, 739, 918
NarI GGCGCC 1 cut(s) 1191
NdeII GATC 2 cut(s) 54, 130
NlaIII CATG 2 cut(s) 893, 1511
NlaIV GGNNCC 5 cut(s) 277, 504, 759, 1192, 1503
NmuCI GTSAC 1 cut(s) 766
NspV TTCGAA 1 cut(s) 359
PagI TCATGA 1 cut(s) 889
PaqCI CACCTGC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 1091
PdmI GAANNNNTTC 2 cut(s) 476, 1125
PfeI GAWTC 6 cut(s) 140, 496, 728, 886, 1430, 1549
PflMI CCANNNNNTGG 1 cut(s) 1007
PleI GAGTC 3 cut(s) 1063, 1297, 1333
PluTI GGCGCC 1 cut(s) 1194
PpsI GAGTC 3 cut(s) 1063, 1297, 1333
Ppu21I YACGTR 1 cut(s) 379
PshAI GACNNNNGTC 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 159, 1000
PspGI CCWGG 2 cut(s) 159, 1000
PspN4I GGNNCC 5 cut(s) 277, 504, 759, 1192, 1503
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 2 cut(s) 117, 1486
RsaI GTAC 4 cut(s) 572, 580, 1526, 1661
RsaNI GTAC 4 cut(s) 571, 579, 1525, 1660
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 4 cut(s) 483, 831, 1112, 1565
Sau3AI GATC 2 cut(s) 54, 130
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 3 cut(s) 1064, 1298, 1334
ScrFI CCNGG 2 cut(s) 161, 1002
SduI GDGCHC 4 cut(s) 255, 384, 522, 1379
SexAI ACCWGGT 2 cut(s) 159, 1000
SfaNI GCATC 2 cut(s) 1093, 1573
SfcI CTRYAG 3 cut(s) 15, 113, 1482
SfoI GGCGCC 1 cut(s) 1192
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 3 cut(s) 173, 365, 574
SmoI CTYRAG 3 cut(s) 173, 365, 574
Sse9I AATT 3 cut(s) 526, 941, 1013
SsiI CCGC 8 cut(s) 6, 33, 100, 439, 653, 755, 1499, 1669
SspDI GGCGCC 1 cut(s) 1190
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 159, 1000
TaaI ACNGT 5 cut(s) 67, 275, 337, 1145, 1608
TaiI ACGT 2 cut(s) 381, 590
TaqI TCGA 5 cut(s) 53, 306, 341, 359, 617
TasI AATT 3 cut(s) 526, 941, 1013
TatI WGTACW 3 cut(s) 570, 578, 1659
TauI GCSGC 4 cut(s) 8, 656, 1502, 1671
TfiI GAWTC 6 cut(s) 140, 496, 728, 886, 1430, 1549
Tru1I TTAA 4 cut(s) 483, 831, 1112, 1565
Tru9I TTAA 4 cut(s) 483, 831, 1112, 1565
TscAI CASTG 4 cut(s) 513, 1150, 1585, 1611
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 6 cut(s) 112, 454, 1418, 1481, 1484, 1651
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 7 cut(s) 292, 701, 878, 906, 954, 1011, 1377
TspGWI ACGGA 1 cut(s) 1282
TspRI CASTG 4 cut(s) 513, 1150, 1585, 1611
Van91I CCANNNNNTGG 1 cut(s) 1007
VpaK11BI GGWCC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 293
XmnI GAANNNNTTC 2 cut(s) 476, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.