Ribosomal L1 domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06380 AT2G42650 AT3G58660 |
| fragaria_vesca | FvH4_4g16980 FvH4_6g38200 |
| malus_domestica | MD09G1152200.v1.1 MD17G1139700.v1.1 |
| prunus_persica | Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1 |
| pyrus_communis | pycom09g07150 pycom17g13280 |
| rosa_chinensis | RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651 |
| rosa_laevigata | RLG00000007744 RLG00000020550 |
| rosa_multiflora | Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010 |
| rosa_roxburghii | Rroxscaffold_2G00096450 Rroxscaffold_5G00363190 |
| rosa_rugosa | Rorug02G0426100 Rorug04G0165100 |
| rosa_samantha | Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000 |
| rosa_wichuraiana | Rw2G039910 Rw4G019600 Rw4G019620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1887 |
| AarI | CACCTGC | 1 cut(s) | 916 |
| Acc36I | ACCTGC | 1 cut(s) | 916 |
| AccB1I | GGYRCC | 2 cut(s) | 889, 1565 |
| AccII | CGCG | 1 cut(s) | 585 |
| AcoI | YGGCCR | 1 cut(s) | 389 |
| AcsI | RAATTY | 4 cut(s) | 131, 212, 1848, 1954 |
| AcuI | CTGAAG | 2 cut(s) | 401, 1787 |
| AfaI | GTAC | 3 cut(s) | 59, 162, 967 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 325, 577, 578, 682, 1771 |
| AflIII | ACRYGT | 1 cut(s) | 974 |
| AjiI | CACGTC | 1 cut(s) | 975 |
| AjnI | CCWGG | 1 cut(s) | 522 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1370, 1402, 1500, 1532 |
| AluBI | AGCT | 6 cut(s) | 499, 751, 790, 1475, 1652, 1785 |
| AluI | AGCT | 6 cut(s) | 499, 751, 790, 1475, 1652, 1785 |
| Alw21I | GWGCWC | 1 cut(s) | 1754 |
| Alw26I | GTCTC | 1 cut(s) | 352 |
| AoxI | GGCC | 3 cut(s) | 218, 389, 708 |
| ApeKI | GCWGC | 3 cut(s) | 499, 841, 904 |
| ApoI | RAATTY | 4 cut(s) | 131, 212, 1848, 1954 |
| AseI | ATTAAT | 2 cut(s) | 36, 1047 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 863 |
| AspLEI | GCGC | 1 cut(s) | 408 |
| AspS9I | GGNCC | 2 cut(s) | 218, 662 |
| AsuII | TTCGAA | 1 cut(s) | 746 |
| AvaII | GGWCC | 1 cut(s) | 662 |
| BaeGI | GKGCMC | 2 cut(s) | 180, 771 |
| BanI | GGYRCC | 2 cut(s) | 889, 1565 |
| Bbv12I | GWGCWC | 1 cut(s) | 1754 |
| BbvI | GCAGC | 3 cut(s) | 486, 828, 916 |
| BccI | CCATC | 2 cut(s) | 1556, 1930 |
| BceAI | ACGGC | 2 cut(s) | 449, 820 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 563, 597, 1626, 1660 |
| BciT130I | CCWGG | 1 cut(s) | 524 |
| BcoDI | GTCTC | 1 cut(s) | 352 |
| BfaI | CTAG | 1 cut(s) | 548 |
| BfmI | CTRYAG | 2 cut(s) | 500, 1936 |
| BfoI | RGCGCY | 1 cut(s) | 409 |
| BfuAI | ACCTGC | 1 cut(s) | 916 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 388 |
| BisI | GCNGC | 5 cut(s) | 392, 500, 842, 905, 1041 |
| BlsI | GCNGC | 5 cut(s) | 393, 501, 843, 906, 1042 |
| Bme1390I | CCNGG | 1 cut(s) | 524 |
| Bme18I | GGWCC | 1 cut(s) | 662 |
| BmgBI | CACGTC | 1 cut(s) | 975 |
| BmgT120I | GGNCC | 2 cut(s) | 218, 662 |
| BmiI | GGNNCC | 4 cut(s) | 664, 891, 1146, 1567 |
| BmrFI | CCNGG | 1 cut(s) | 524 |
| BmsI | GCATC | 1 cut(s) | 1480 |
| BoxI | GACNNNNGTC | 1 cut(s) | 667 |
| BpmI | CTGGAG | 1 cut(s) | 386 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1476 |
| Bpu14I | TTCGAA | 1 cut(s) | 746 |
| BpuEI | CTTGAG | 5 cut(s) | 545, 737, 757, 982, 1638 |
| Bsa29I | ATCGAT | 1 cut(s) | 439 |
| BsaAI | YACGTR | 1 cut(s) | 766 |
| BsaJI | CCNNGG | 3 cut(s) | 386, 636, 681 |
| BsaWI | WCCGGW | 1 cut(s) | 886 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 325, 577, 578, 682, 1771 |
| Bse118I | RCCGGY | 2 cut(s) | 892, 1129 |
| Bse3DI | GCAATG | 1 cut(s) | 1306 |
| BseBI | CCWGG | 1 cut(s) | 524 |
| BseCI | ATCGAT | 1 cut(s) | 439 |
| BseDI | CCNNGG | 3 cut(s) | 386, 636, 681 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 325, 577, 578, 682, 1771 |
| BseMI | GCAATG | 1 cut(s) | 1306 |
| BseMII | CTCAG | 2 cut(s) | 213, 1485 |
| BseSI | GKGCMC | 2 cut(s) | 180, 771 |
| BseXI | GCAGC | 3 cut(s) | 486, 828, 916 |
| BsgI | GTGCAG | 1 cut(s) | 476 |
| Bsh1236I | CGCG | 1 cut(s) | 585 |
| Bsh1285I | CGRYCG | 1 cut(s) | 443 |
| BshFI | GGCC | 3 cut(s) | 220, 391, 710 |
| BshNI | GGYRCC | 2 cut(s) | 889, 1565 |
| BshVI | ATCGAT | 1 cut(s) | 439 |
| BsiEI | CGRYCG | 1 cut(s) | 443 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1754 |
| BsiSI | CCGG | 3 cut(s) | 887, 893, 1130 |
| BslFI | GGGAC | 1 cut(s) | 985 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 325, 577, 578, 682, 1771 |
| BsmAI | GTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 1 cut(s) | 985 |
| BsmI | GAATGC | 1 cut(s) | 1036 |
| BsnI | GGCC | 3 cut(s) | 220, 391, 710 |
| Bsp119I | TTCGAA | 1 cut(s) | 746 |
| Bsp1286I | GDGCHC | 3 cut(s) | 180, 771, 1754 |
| Bsp1407I | TGTACA | 1 cut(s) | 57 |
| Bsp143I | GATC | 3 cut(s) | 440, 517, 1898 |
| Bsp19I | CCATGG | 1 cut(s) | 386 |
| BspANI | GGCC | 3 cut(s) | 220, 391, 710 |
| BspCNI | CTCAG | 2 cut(s) | 212, 1486 |
| BspDI | ATCGAT | 1 cut(s) | 439 |
| BspFNI | CGCG | 1 cut(s) | 585 |
| BspHI | TCATGA | 1 cut(s) | 1276 |
| BspLI | GGNNCC | 4 cut(s) | 664, 891, 1146, 1567 |
| BspMAI | CTGCAG | 2 cut(s) | 504, 1940 |
| BspMI | ACCTGC | 1 cut(s) | 916 |
| BspQI | GCTCTTC | 1 cut(s) | 1742 |
| BspT104I | TTCGAA | 1 cut(s) | 746 |
| BspT107I | GGYRCC | 2 cut(s) | 889, 1565 |
| BsrDI | GCAATG | 1 cut(s) | 1306 |
| BsrFI | RCCGGY | 2 cut(s) | 892, 1129 |
| BsrGI | TGTACA | 1 cut(s) | 57 |
| BssAI | RCCGGY | 2 cut(s) | 892, 1129 |
| BssECI | CCNNGG | 3 cut(s) | 386, 636, 681 |
| BssMI | GATC | 3 cut(s) | 440, 517, 1898 |
| BssT1I | CCWWGG | 2 cut(s) | 386, 681 |
| Bst2UI | CCWGG | 1 cut(s) | 524 |
| Bst4CI | ACNGT | 4 cut(s) | 90, 160, 454, 1573 |
| Bst6I | CTCTTC | 9 cut(s) | 355, 378, 1235, 1247, 1409, 1656, 1679, 1721, 1742 |
| BstAUI | TGTACA | 1 cut(s) | 57 |
| BstBAI | YACGTR | 1 cut(s) | 766 |
| BstBI | TTCGAA | 1 cut(s) | 746 |
| BstC8I | GCNNGC | 1 cut(s) | 1122 |
| BstDEI | CTNAG | 4 cut(s) | 199, 1476, 1494, 1880 |
| BstDSI | CCRYGG | 1 cut(s) | 386 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 680, 1769 |
| BstFNI | CGCG | 1 cut(s) | 585 |
| BstH2I | RGCGCY | 1 cut(s) | 409 |
| BstHHI | GCGC | 1 cut(s) | 408 |
| BstKTI | GATC | 3 cut(s) | 443, 520, 1901 |
| BstMAI | GTCTC | 1 cut(s) | 352 |
| BstMBI | GATC | 3 cut(s) | 440, 517, 1898 |
| BstMCI | CGRYCG | 1 cut(s) | 443 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 388, 470, 748, 832, 841, 1040, 1126, 1305, 1819 |
| BstNI | CCWGG | 1 cut(s) | 524 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 667 |
| BstSCI | CCNGG | 1 cut(s) | 522 |
| BstSFI | CTRYAG | 2 cut(s) | 500, 1936 |
| BstSLI | GKGCMC | 2 cut(s) | 180, 771 |
| BstUI | CGCG | 1 cut(s) | 585 |
| BstV1I | GCAGC | 3 cut(s) | 486, 828, 916 |
| Bsu15I | ATCGAT | 1 cut(s) | 439 |
| BsuRI | GGCC | 3 cut(s) | 220, 391, 710 |
| BsuTUI | ATCGAT | 1 cut(s) | 439 |
| BtgI | CCRYGG | 1 cut(s) | 386 |
| BtrI | CACGTC | 1 cut(s) | 975 |
| BtsI | GCAGTG | 2 cut(s) | 360, 1399 |
| BtsIMutI | CAGTG | 3 cut(s) | 360, 1399, 1569 |
| BveI | ACCTGC | 1 cut(s) | 916 |
| Cac8I | GCNNGC | 1 cut(s) | 1122 |
| CciI | TCATGA | 1 cut(s) | 1276 |
| CfoI | GCGC | 1 cut(s) | 408 |
| Cfr10I | RCCGGY | 2 cut(s) | 892, 1129 |
| Cfr13I | GGNCC | 2 cut(s) | 218, 662 |
| ClaI | ATCGAT | 1 cut(s) | 439 |
| CseI | GACGC | 1 cut(s) | 574 |
| Csp6I | GTAC | 3 cut(s) | 58, 161, 966 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 169, 204, 922, 957 |
| CviAII | CATG | 2 cut(s) | 387, 1277 |
| CviQI | GTAC | 3 cut(s) | 58, 161, 966 |
| DdeI | CTNAG | 4 cut(s) | 199, 1476, 1494, 1880 |
| DpnI | GATC | 3 cut(s) | 442, 519, 1900 |
| DpnII | GATC | 3 cut(s) | 440, 517, 1898 |
| EaeI | YGGCCR | 1 cut(s) | 389 |
| Eam1104I | CTCTTC | 9 cut(s) | 355, 378, 1235, 1247, 1409, 1656, 1679, 1721, 1742 |
| EarI | CTCTTC | 9 cut(s) | 355, 378, 1235, 1247, 1409, 1656, 1679, 1721, 1742 |
| EciI | GGCGGA | 2 cut(s) | 369, 502 |
| Eco130I | CCWWGG | 2 cut(s) | 386, 681 |
| Eco47I | GGWCC | 1 cut(s) | 662 |
| Eco57I | CTGAAG | 2 cut(s) | 401, 1787 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 680, 1769 |
| EcoRII | CCWGG | 1 cut(s) | 522 |
| EcoT14I | CCWWGG | 2 cut(s) | 386, 681 |
| ErhI | CCWWGG | 2 cut(s) | 386, 681 |
| FaeI | CATG | 2 cut(s) | 390, 1280 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 851, 883, 1769, 1801 |
| FaqI | GGGAC | 1 cut(s) | 985 |
| FatI | CATG | 2 cut(s) | 386, 1276 |
| FauI | CCCGC | 1 cut(s) | 579 |
| Fnu4HI | GCNGC | 5 cut(s) | 392, 500, 842, 905, 1041 |
| Fsp4HI | GCNGC | 5 cut(s) | 392, 500, 842, 905, 1041 |
| FspBI | CTAG | 1 cut(s) | 548 |
| GlaI | GCGC | 1 cut(s) | 407 |
| GluI | GCNGC | 5 cut(s) | 392, 500, 842, 905, 1041 |
| GsuI | CTGGAG | 1 cut(s) | 386 |
| HaeII | RGCGCY | 1 cut(s) | 409 |
| HaeIII | GGCC | 3 cut(s) | 220, 391, 710 |
| HapII | CCGG | 3 cut(s) | 887, 893, 1130 |
| HgaI | GACGC | 1 cut(s) | 574 |
| HhaI | GCGC | 1 cut(s) | 408 |
| Hin1II | CATG | 2 cut(s) | 390, 1280 |
| Hin6I | GCGC | 1 cut(s) | 406 |
| HinP1I | GCGC | 1 cut(s) | 406 |
| HincII | GTYRAC | 1 cut(s) | 589 |
| HindII | GTYRAC | 1 cut(s) | 589 |
| HindIII | AAGCTT | 1 cut(s) | 1783 |
| HpaII | CCGG | 3 cut(s) | 887, 893, 1130 |
| Hpy166II | GTNNAC | 6 cut(s) | 469, 589, 898, 931, 1351, 1914 |
| Hpy188I | TCNGA | 5 cut(s) | 532, 637, 648, 673, 1953 |
| Hpy188III | TCNNGA | 8 cut(s) | 562, 694, 736, 754, 961, 1148, 1277, 1842 |
| Hpy8I | GTNNAC | 6 cut(s) | 469, 589, 898, 931, 1351, 1914 |
| Hpy99I | CGWCG | 3 cut(s) | 536, 659, 662 |
| HpyCH4III | ACNGT | 4 cut(s) | 90, 160, 454, 1573 |
| HpyCH4IV | ACGT | 3 cut(s) | 174, 765, 974 |
| HpyCH4V | TGCA | 6 cut(s) | 51, 457, 502, 904, 1034, 1938 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 388, 470, 748, 832, 841, 1040, 1126, 1305, 1819 |
| HpyF3I | CTNAG | 4 cut(s) | 199, 1476, 1494, 1880 |
| HpySE526I | ACGT | 3 cut(s) | 174, 765, 974 |
| Hsp92II | CATG | 2 cut(s) | 390, 1280 |
| HspAI | GCGC | 1 cut(s) | 406 |
| Kzo9I | GATC | 3 cut(s) | 440, 517, 1898 |
| LguI | GCTCTTC | 1 cut(s) | 1742 |
| LmnI | GCTCC | 1 cut(s) | 922 |
| Lsp1109I | GCAGC | 3 cut(s) | 486, 828, 916 |
| LweI | GCATC | 1 cut(s) | 1480 |
| MaeI | CTAG | 1 cut(s) | 548 |
| MaeII | ACGT | 3 cut(s) | 174, 765, 974 |
| MaeIII | GTNAC | 4 cut(s) | 1153, 1621, 1730, 1875 |
| MalI | GATC | 3 cut(s) | 442, 519, 1900 |
| MboI | GATC | 3 cut(s) | 440, 517, 1898 |
| MhlI | GDGCHC | 3 cut(s) | 180, 771, 1754 |
| MlyI | GAGTC | 4 cut(s) | 785, 1673, 1709, 1844 |
| MmeI | TCCRAC | 3 cut(s) | 555, 696, 1687 |
| MroXI | GAANNNNTTC | 1 cut(s) | 863 |
| MseI | TTAA | 8 cut(s) | 36, 44, 71, 209, 870, 1047, 1499, 1946 |
| MslI | CAYNNNNRTG | 1 cut(s) | 722 |
| MspI | CCGG | 3 cut(s) | 887, 893, 1130 |
| MspR9I | CCNGG | 1 cut(s) | 524 |
| Mva1269I | GAATGC | 1 cut(s) | 1036 |
| MvaI | CCWGG | 1 cut(s) | 524 |
| MvnI | CGCG | 1 cut(s) | 585 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 388, 470, 748, 832, 841, 1040, 1126, 1305, 1819 |
| NcoI | CCATGG | 1 cut(s) | 386 |
| NdeII | GATC | 3 cut(s) | 440, 517, 1898 |
| NlaIII | CATG | 2 cut(s) | 390, 1280 |
| NlaIV | GGNNCC | 4 cut(s) | 664, 891, 1146, 1567 |
| NmuCI | GTSAC | 2 cut(s) | 1153, 1730 |
| NspV | TTCGAA | 1 cut(s) | 746 |
| PagI | TCATGA | 1 cut(s) | 1276 |
| PaqCI | CACCTGC | 1 cut(s) | 916 |
| PciSI | GCTCTTC | 1 cut(s) | 1742 |
| PctI | GAATGC | 1 cut(s) | 1036 |
| PdmI | GAANNNNTTC | 1 cut(s) | 863 |
| PfeI | GAWTC | 7 cut(s) | 231, 527, 883, 1115, 1273, 1643, 1797 |
| PfoI | TCCNGGA | 1 cut(s) | 522 |
| PkrI | GCNGC | 5 cut(s) | 393, 501, 843, 906, 1042 |
| Ple19I | CGATCG | 1 cut(s) | 443 |
| PleI | GAGTC | 4 cut(s) | 784, 1672, 1708, 1843 |
| PpsI | GAGTC | 4 cut(s) | 784, 1672, 1708, 1843 |
| Ppu21I | YACGTR | 1 cut(s) | 766 |
| PshAI | GACNNNNGTC | 1 cut(s) | 667 |
| PshBI | ATTAAT | 2 cut(s) | 36, 1047 |
| PsiI | TTATAA | 1 cut(s) | 1887 |
| Psp6I | CCWGG | 1 cut(s) | 522 |
| PspGI | CCWGG | 1 cut(s) | 522 |
| PspN4I | GGNNCC | 4 cut(s) | 664, 891, 1146, 1567 |
| PspPI | GGNCC | 2 cut(s) | 218, 662 |
| PstI | CTGCAG | 2 cut(s) | 504, 1940 |
| PvuI | CGATCG | 1 cut(s) | 443 |
| RsaI | GTAC | 3 cut(s) | 59, 162, 967 |
| RsaNI | GTAC | 3 cut(s) | 58, 161, 966 |
| RseI | CAYNNNNRTG | 1 cut(s) | 722 |
| SapI | GCTCTTC | 1 cut(s) | 1742 |
| SaqAI | TTAA | 8 cut(s) | 36, 44, 71, 209, 870, 1047, 1499, 1946 |
| SatI | GCNGC | 5 cut(s) | 392, 500, 842, 905, 1041 |
| Sau3AI | GATC | 3 cut(s) | 440, 517, 1898 |
| Sau96I | GGNCC | 2 cut(s) | 218, 662 |
| SchI | GAGTC | 4 cut(s) | 785, 1673, 1709, 1844 |
| ScrFI | CCNGG | 1 cut(s) | 524 |
| SduI | GDGCHC | 3 cut(s) | 180, 771, 1754 |
| SfaNI | GCATC | 1 cut(s) | 1480 |
| SfcI | CTRYAG | 2 cut(s) | 500, 1936 |
| SfuI | TTCGAA | 1 cut(s) | 746 |
| SinI | GGWCC | 1 cut(s) | 662 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 722 |
| SmlI | CTYRAG | 5 cut(s) | 560, 736, 752, 961, 1653 |
| SmoI | CTYRAG | 5 cut(s) | 560, 736, 752, 961, 1653 |
| SspMI | CTAG | 1 cut(s) | 548 |
| StyD4I | CCNGG | 1 cut(s) | 522 |
| StyI | CCWWGG | 2 cut(s) | 386, 681 |
| TaaI | ACNGT | 4 cut(s) | 90, 160, 454, 1573 |
| TaiI | ACGT | 3 cut(s) | 177, 768, 977 |
| TaqI | TCGA | 7 cut(s) | 439, 443, 516, 693, 728, 746, 1004 |
| TatI | WGTACW | 2 cut(s) | 57, 965 |
| TauI | GCSGC | 2 cut(s) | 394, 1043 |
| TfiI | GAWTC | 7 cut(s) | 231, 527, 883, 1115, 1273, 1643, 1797 |
| Tru1I | TTAA | 8 cut(s) | 36, 44, 71, 209, 870, 1047, 1499, 1946 |
| Tru9I | TTAA | 8 cut(s) | 36, 44, 71, 209, 870, 1047, 1499, 1946 |
| TscAI | CASTG | 3 cut(s) | 367, 1399, 1576 |
| TseFI | GTSAC | 2 cut(s) | 1153, 1730 |
| TseI | GCWGC | 3 cut(s) | 499, 841, 904 |
| Tsp45I | GTSAC | 2 cut(s) | 1153, 1730 |
| TspDTI | ATGAA | 7 cut(s) | 679, 1088, 1265, 1293, 1398, 1568, 1752 |
| TspGWI | ACGGA | 1 cut(s) | 675 |
| TspRI | CASTG | 3 cut(s) | 367, 1399, 1576 |
| VpaK11BI | GGWCC | 1 cut(s) | 662 |
| VspI | ATTAAT | 2 cut(s) | 36, 1047 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 680, 1769 |
| XapI | RAATTY | 4 cut(s) | 131, 212, 1848, 1954 |
| XmnI | GAANNNNTTC | 1 cut(s) | 863 |
| XspI | CTAG | 1 cut(s) | 548 |