pycom17g13280

Ribosomal L1 domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
10940752 .. 10943094
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g13280.5

Sequence Viewer

Length: 1974 bp
ATGTCTTTTTCCTATTGCTATTGGGAAATGCTTATTAATATGTTAAATTGCAAATTGTACATTTTTTTCTTAAAAACCAAACCGAAACCGTTTGAAACCGCACCAAACCGAACCAAACACGAACCGCAAAAATTTTCGGTTTCGGTTTCACTCAAAACCGTACCAAACCAAAACGTGCCCACCCCTATTGAAGATTTCTCAGCCCAATTAAAATTCGGGCCGAACGCAAGAATCAATCAAACCCTACTGAACCCCATTTTTACAGCCCAAATCAACATTACAATTCCCAATCCCTACTTTCTCCCAAAAACCCTAAACCCCCAAAAGGCAAAACATCGTGCCTTTGTCTCTTCCTTCACCACTGCTTATTCTCTTCCTCCGCCTCCATGGCCGCCACCACTCCAGCGCCTCCACCTTCAGCCACAAAACCCACCAAATCGATCGACCAAAACGGTGCAGAAAGCCGTAAACGCCCTCATCAAATGGCGGAACGACAAGCTGCAGACCCAGAACCTCGATCTCCTGGAATCCGACGAGTTCGCCTACCTAGTTCTCACCCTCAAGAAAATCCCGCAAAAGGGTCGCGTCAACGCCTACAAAATCCCCCTCCCAAATCCCCTCCACTCCCAACTCTCCGAGGTCTGTCTGATATACGACGACGGACCCAAGTCCGACCTCACCAAGGACTTCATCGAGAAGAAAATCAAGGCCGAAAACATACCCGTGTCGAAAATCTTGAGGCTTTCGAAGCTCAAGAGCGATTACGTGCCCTTTGAGTCCAAGAGGAAGCTGATGTATTCTTATGATATGTTTCTGGCTGATAAGCGGATTGTGCCGTTGCTGCCGAAGTATTTGGGGAAGCACTTCTTTAAGAAGAAGAAGATTCCGGTGCCGGTGGACTTGCAGCAAAAGAATTGGAAGGAGCAGGTGGACAAGATTTGTGGGTCGGCTTTGTTGTTCTTGAGTACAGGGACGTGTAGTGTGGTGAGGGTTGCGAAAGTTTCGATGAGCATTGATGAGATTGTGGAGAATGCAGTTGCGGCGATTAATGGGATAGTGGAGATTGTGCCGAAAAATTGGGGAGGTGTGAGGTCGTTTCATTTGAAGTTGTTTGAATCGCTTGCGTTGCCGGTTTATCAGGCGGTTCCAGATGTGACATTGAAGATTGAGGGAGAGAAGGGGGTTGAGGAAGGTGAGAAGGAGGTGAAAGAGGTTGGTAAGAGTGAGAATAAGGATTTGAAGAGTGAGAAGAAGAGTAAGAAGAAGGGTAGGATTCATGAAGTGAGGTATTTGGATAGCAATGTCGGCGAGGTGCTTGATGATGATGATTTTGGTATTGTTGGTGGTGTGGACATTGGGGAAGGTAAGCAAAGTGAGAATGATGAATTGGGCAGTGGCGAATTGGGGAAGAAGAAGAGGAAGAAAGAAAAAGTTGCTGGTGAGTTGAAGGGTGAGAAAAGGTTGAAGAAATCAGCTAAGGTGAAAGATGATGCTGAGTTAAATGGGGAAAAGGTTATTGGTGAGAAGAAGTTGAAAAGGTCGGCGAAGGCAGGAGAAGAAGATGGTGCCACTGTCATTCATAAGAAATATGGGCTGTCCTTGAAAGAGAAGAAAAAAGATGTTACAAAGAAGAAAGCAGATGATTCGTCAGCTCAAGGAGAAGAGTCTATTGTAAAGAAAGAGAAGAGAAAGAGTAAAGAGTCTGTTGGAAAGAAGGAGAAAAGGAAGAGTGACGATGAAAAGTTGAAGAGCACAGAAGCAAACCTGAAGAAGGAAAAGAGAAGCTTTGCGGTGGGATTCAATATATCTGGGCAAGTATGGCTAATCCATATTGAGTCGTCTGGAAGAATTTTGATTGTTGTGTATTTTATTCTGTTACTTAGTTATAACTTATGGAGATCATACAAAATGTTTACTTTTCCATCGTGGTTTTTCTGCAGTCGCTTAACTCTGAATTTGATTGTGTCTCTATGA

Protein Analysis

658

Amino Acids

74.55

Weight (kDa)

9.63

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1887
AarI CACCTGC 1 cut(s) 916
Acc36I ACCTGC 1 cut(s) 916
AccB1I GGYRCC 2 cut(s) 889, 1565
AccII CGCG 1 cut(s) 585
AcoI YGGCCR 1 cut(s) 389
AcsI RAATTY 4 cut(s) 131, 212, 1848, 1954
AcuI CTGAAG 2 cut(s) 401, 1787
AfaI GTAC 3 cut(s) 59, 162, 967
AfiI CCNNNNNNNGG 5 cut(s) 325, 577, 578, 682, 1771
AflIII ACRYGT 1 cut(s) 974
AjiI CACGTC 1 cut(s) 975
AjnI CCWGG 1 cut(s) 522
AjuI GAANNNNNNNTTGG 4 cut(s) 1370, 1402, 1500, 1532
AluBI AGCT 6 cut(s) 499, 751, 790, 1475, 1652, 1785
AluI AGCT 6 cut(s) 499, 751, 790, 1475, 1652, 1785
Alw21I GWGCWC 1 cut(s) 1754
Alw26I GTCTC 1 cut(s) 352
AoxI GGCC 3 cut(s) 218, 389, 708
ApeKI GCWGC 3 cut(s) 499, 841, 904
ApoI RAATTY 4 cut(s) 131, 212, 1848, 1954
AseI ATTAAT 2 cut(s) 36, 1047
Asp700I GAANNNNTTC 1 cut(s) 863
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 218, 662
AsuII TTCGAA 1 cut(s) 746
AvaII GGWCC 1 cut(s) 662
BaeGI GKGCMC 2 cut(s) 180, 771
BanI GGYRCC 2 cut(s) 889, 1565
Bbv12I GWGCWC 1 cut(s) 1754
BbvI GCAGC 3 cut(s) 486, 828, 916
BccI CCATC 2 cut(s) 1556, 1930
BceAI ACGGC 2 cut(s) 449, 820
BcgI CGANNNNNNTGC 4 cut(s) 563, 597, 1626, 1660
BciT130I CCWGG 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 2 cut(s) 500, 1936
BfoI RGCGCY 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 916
BglI GCCNNNNNGGC 1 cut(s) 388
BisI GCNGC 5 cut(s) 392, 500, 842, 905, 1041
BlsI GCNGC 5 cut(s) 393, 501, 843, 906, 1042
Bme1390I CCNGG 1 cut(s) 524
Bme18I GGWCC 1 cut(s) 662
BmgBI CACGTC 1 cut(s) 975
BmgT120I GGNCC 2 cut(s) 218, 662
BmiI GGNNCC 4 cut(s) 664, 891, 1146, 1567
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 1 cut(s) 1480
BoxI GACNNNNGTC 1 cut(s) 667
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 1476
Bpu14I TTCGAA 1 cut(s) 746
BpuEI CTTGAG 5 cut(s) 545, 737, 757, 982, 1638
Bsa29I ATCGAT 1 cut(s) 439
BsaAI YACGTR 1 cut(s) 766
BsaJI CCNNGG 3 cut(s) 386, 636, 681
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 5 cut(s) 325, 577, 578, 682, 1771
Bse118I RCCGGY 2 cut(s) 892, 1129
Bse3DI GCAATG 1 cut(s) 1306
BseBI CCWGG 1 cut(s) 524
BseCI ATCGAT 1 cut(s) 439
BseDI CCNNGG 3 cut(s) 386, 636, 681
BseLI CCNNNNNNNGG 5 cut(s) 325, 577, 578, 682, 1771
BseMI GCAATG 1 cut(s) 1306
BseMII CTCAG 2 cut(s) 213, 1485
BseSI GKGCMC 2 cut(s) 180, 771
BseXI GCAGC 3 cut(s) 486, 828, 916
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 585
Bsh1285I CGRYCG 1 cut(s) 443
BshFI GGCC 3 cut(s) 220, 391, 710
BshNI GGYRCC 2 cut(s) 889, 1565
BshVI ATCGAT 1 cut(s) 439
BsiEI CGRYCG 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 1754
BsiSI CCGG 3 cut(s) 887, 893, 1130
BslFI GGGAC 1 cut(s) 985
BslI CCNNNNNNNGG 5 cut(s) 325, 577, 578, 682, 1771
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 985
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 3 cut(s) 220, 391, 710
Bsp119I TTCGAA 1 cut(s) 746
Bsp1286I GDGCHC 3 cut(s) 180, 771, 1754
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 3 cut(s) 440, 517, 1898
Bsp19I CCATGG 1 cut(s) 386
BspANI GGCC 3 cut(s) 220, 391, 710
BspCNI CTCAG 2 cut(s) 212, 1486
BspDI ATCGAT 1 cut(s) 439
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 1276
BspLI GGNNCC 4 cut(s) 664, 891, 1146, 1567
BspMAI CTGCAG 2 cut(s) 504, 1940
BspMI ACCTGC 1 cut(s) 916
BspQI GCTCTTC 1 cut(s) 1742
BspT104I TTCGAA 1 cut(s) 746
BspT107I GGYRCC 2 cut(s) 889, 1565
BsrDI GCAATG 1 cut(s) 1306
BsrFI RCCGGY 2 cut(s) 892, 1129
BsrGI TGTACA 1 cut(s) 57
BssAI RCCGGY 2 cut(s) 892, 1129
BssECI CCNNGG 3 cut(s) 386, 636, 681
BssMI GATC 3 cut(s) 440, 517, 1898
BssT1I CCWWGG 2 cut(s) 386, 681
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 4 cut(s) 90, 160, 454, 1573
Bst6I CTCTTC 9 cut(s) 355, 378, 1235, 1247, 1409, 1656, 1679, 1721, 1742
BstAUI TGTACA 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 766
BstBI TTCGAA 1 cut(s) 746
BstC8I GCNNGC 1 cut(s) 1122
BstDEI CTNAG 4 cut(s) 199, 1476, 1494, 1880
BstDSI CCRYGG 1 cut(s) 386
BstENI CCTNNNNNAGG 2 cut(s) 680, 1769
BstFNI CGCG 1 cut(s) 585
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 3 cut(s) 443, 520, 1901
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 3 cut(s) 440, 517, 1898
BstMCI CGRYCG 1 cut(s) 443
BstMWI GCNNNNNNNGC 9 cut(s) 388, 470, 748, 832, 841, 1040, 1126, 1305, 1819
BstNI CCWGG 1 cut(s) 524
BstPAI GACNNNNGTC 1 cut(s) 667
BstSCI CCNGG 1 cut(s) 522
BstSFI CTRYAG 2 cut(s) 500, 1936
BstSLI GKGCMC 2 cut(s) 180, 771
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 3 cut(s) 486, 828, 916
Bsu15I ATCGAT 1 cut(s) 439
BsuRI GGCC 3 cut(s) 220, 391, 710
BsuTUI ATCGAT 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 386
BtrI CACGTC 1 cut(s) 975
BtsI GCAGTG 2 cut(s) 360, 1399
BtsIMutI CAGTG 3 cut(s) 360, 1399, 1569
BveI ACCTGC 1 cut(s) 916
Cac8I GCNNGC 1 cut(s) 1122
CciI TCATGA 1 cut(s) 1276
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 2 cut(s) 892, 1129
Cfr13I GGNCC 2 cut(s) 218, 662
ClaI ATCGAT 1 cut(s) 439
CseI GACGC 1 cut(s) 574
Csp6I GTAC 3 cut(s) 58, 161, 966
CspCI CAANNNNNGTGG 4 cut(s) 169, 204, 922, 957
CviAII CATG 2 cut(s) 387, 1277
CviQI GTAC 3 cut(s) 58, 161, 966
DdeI CTNAG 4 cut(s) 199, 1476, 1494, 1880
DpnI GATC 3 cut(s) 442, 519, 1900
DpnII GATC 3 cut(s) 440, 517, 1898
EaeI YGGCCR 1 cut(s) 389
Eam1104I CTCTTC 9 cut(s) 355, 378, 1235, 1247, 1409, 1656, 1679, 1721, 1742
EarI CTCTTC 9 cut(s) 355, 378, 1235, 1247, 1409, 1656, 1679, 1721, 1742
EciI GGCGGA 2 cut(s) 369, 502
Eco130I CCWWGG 2 cut(s) 386, 681
Eco47I GGWCC 1 cut(s) 662
Eco57I CTGAAG 2 cut(s) 401, 1787
EcoNI CCTNNNNNAGG 2 cut(s) 680, 1769
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 2 cut(s) 386, 681
ErhI CCWWGG 2 cut(s) 386, 681
FaeI CATG 2 cut(s) 390, 1280
FalI AAGNNNNNCTT 4 cut(s) 851, 883, 1769, 1801
FaqI GGGAC 1 cut(s) 985
FatI CATG 2 cut(s) 386, 1276
FauI CCCGC 1 cut(s) 579
Fnu4HI GCNGC 5 cut(s) 392, 500, 842, 905, 1041
Fsp4HI GCNGC 5 cut(s) 392, 500, 842, 905, 1041
FspBI CTAG 1 cut(s) 548
GlaI GCGC 1 cut(s) 407
GluI GCNGC 5 cut(s) 392, 500, 842, 905, 1041
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 3 cut(s) 220, 391, 710
HapII CCGG 3 cut(s) 887, 893, 1130
HgaI GACGC 1 cut(s) 574
HhaI GCGC 1 cut(s) 408
Hin1II CATG 2 cut(s) 390, 1280
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 1783
HpaII CCGG 3 cut(s) 887, 893, 1130
Hpy166II GTNNAC 6 cut(s) 469, 589, 898, 931, 1351, 1914
Hpy188I TCNGA 5 cut(s) 532, 637, 648, 673, 1953
Hpy188III TCNNGA 8 cut(s) 562, 694, 736, 754, 961, 1148, 1277, 1842
Hpy8I GTNNAC 6 cut(s) 469, 589, 898, 931, 1351, 1914
Hpy99I CGWCG 3 cut(s) 536, 659, 662
HpyCH4III ACNGT 4 cut(s) 90, 160, 454, 1573
HpyCH4IV ACGT 3 cut(s) 174, 765, 974
HpyCH4V TGCA 6 cut(s) 51, 457, 502, 904, 1034, 1938
HpyF10VI GCNNNNNNNGC 9 cut(s) 388, 470, 748, 832, 841, 1040, 1126, 1305, 1819
HpyF3I CTNAG 4 cut(s) 199, 1476, 1494, 1880
HpySE526I ACGT 3 cut(s) 174, 765, 974
Hsp92II CATG 2 cut(s) 390, 1280
HspAI GCGC 1 cut(s) 406
Kzo9I GATC 3 cut(s) 440, 517, 1898
LguI GCTCTTC 1 cut(s) 1742
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 3 cut(s) 486, 828, 916
LweI GCATC 1 cut(s) 1480
MaeI CTAG 1 cut(s) 548
MaeII ACGT 3 cut(s) 174, 765, 974
MaeIII GTNAC 4 cut(s) 1153, 1621, 1730, 1875
MalI GATC 3 cut(s) 442, 519, 1900
MboI GATC 3 cut(s) 440, 517, 1898
MhlI GDGCHC 3 cut(s) 180, 771, 1754
MlyI GAGTC 4 cut(s) 785, 1673, 1709, 1844
MmeI TCCRAC 3 cut(s) 555, 696, 1687
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 8 cut(s) 36, 44, 71, 209, 870, 1047, 1499, 1946
MslI CAYNNNNRTG 1 cut(s) 722
MspI CCGG 3 cut(s) 887, 893, 1130
MspR9I CCNGG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 1036
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 9 cut(s) 388, 470, 748, 832, 841, 1040, 1126, 1305, 1819
NcoI CCATGG 1 cut(s) 386
NdeII GATC 3 cut(s) 440, 517, 1898
NlaIII CATG 2 cut(s) 390, 1280
NlaIV GGNNCC 4 cut(s) 664, 891, 1146, 1567
NmuCI GTSAC 2 cut(s) 1153, 1730
NspV TTCGAA 1 cut(s) 746
PagI TCATGA 1 cut(s) 1276
PaqCI CACCTGC 1 cut(s) 916
PciSI GCTCTTC 1 cut(s) 1742
PctI GAATGC 1 cut(s) 1036
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 7 cut(s) 231, 527, 883, 1115, 1273, 1643, 1797
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 5 cut(s) 393, 501, 843, 906, 1042
Ple19I CGATCG 1 cut(s) 443
PleI GAGTC 4 cut(s) 784, 1672, 1708, 1843
PpsI GAGTC 4 cut(s) 784, 1672, 1708, 1843
Ppu21I YACGTR 1 cut(s) 766
PshAI GACNNNNGTC 1 cut(s) 667
PshBI ATTAAT 2 cut(s) 36, 1047
PsiI TTATAA 1 cut(s) 1887
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 4 cut(s) 664, 891, 1146, 1567
PspPI GGNCC 2 cut(s) 218, 662
PstI CTGCAG 2 cut(s) 504, 1940
PvuI CGATCG 1 cut(s) 443
RsaI GTAC 3 cut(s) 59, 162, 967
RsaNI GTAC 3 cut(s) 58, 161, 966
RseI CAYNNNNRTG 1 cut(s) 722
SapI GCTCTTC 1 cut(s) 1742
SaqAI TTAA 8 cut(s) 36, 44, 71, 209, 870, 1047, 1499, 1946
SatI GCNGC 5 cut(s) 392, 500, 842, 905, 1041
Sau3AI GATC 3 cut(s) 440, 517, 1898
Sau96I GGNCC 2 cut(s) 218, 662
SchI GAGTC 4 cut(s) 785, 1673, 1709, 1844
ScrFI CCNGG 1 cut(s) 524
SduI GDGCHC 3 cut(s) 180, 771, 1754
SfaNI GCATC 1 cut(s) 1480
SfcI CTRYAG 2 cut(s) 500, 1936
SfuI TTCGAA 1 cut(s) 746
SinI GGWCC 1 cut(s) 662
SmiMI CAYNNNNRTG 1 cut(s) 722
SmlI CTYRAG 5 cut(s) 560, 736, 752, 961, 1653
SmoI CTYRAG 5 cut(s) 560, 736, 752, 961, 1653
SspMI CTAG 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 2 cut(s) 386, 681
TaaI ACNGT 4 cut(s) 90, 160, 454, 1573
TaiI ACGT 3 cut(s) 177, 768, 977
TaqI TCGA 7 cut(s) 439, 443, 516, 693, 728, 746, 1004
TatI WGTACW 2 cut(s) 57, 965
TauI GCSGC 2 cut(s) 394, 1043
TfiI GAWTC 7 cut(s) 231, 527, 883, 1115, 1273, 1643, 1797
Tru1I TTAA 8 cut(s) 36, 44, 71, 209, 870, 1047, 1499, 1946
Tru9I TTAA 8 cut(s) 36, 44, 71, 209, 870, 1047, 1499, 1946
TscAI CASTG 3 cut(s) 367, 1399, 1576
TseFI GTSAC 2 cut(s) 1153, 1730
TseI GCWGC 3 cut(s) 499, 841, 904
Tsp45I GTSAC 2 cut(s) 1153, 1730
TspDTI ATGAA 7 cut(s) 679, 1088, 1265, 1293, 1398, 1568, 1752
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 3 cut(s) 367, 1399, 1576
VpaK11BI GGWCC 1 cut(s) 662
VspI ATTAAT 2 cut(s) 36, 1047
XagI CCTNNNNNAGG 2 cut(s) 680, 1769
XapI RAATTY 4 cut(s) 131, 212, 1848, 1954
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.