Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Forward (+)

44286254 .. 44287276

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCCGCGACCACCGCAGCTCCTCCACCTTCCAAATCCACACCCACCAAACTCAACCCCAACACCGTGCGAAAAGCCGTCAATGCCCTCCTCAAATGGCGAAATTCCCAGACCCAGAACCCCGACGATCTCTTGGACTCCTCCGACGAATTCACCTACCTCGTCCTCACCCTCAAGAAAATCCCACCAAAGGGTCGCGTCAACGCCTTCAAAATCCCTCTCCCAAATCCCCTCCTCTCCGAATCCACCGAGTTCTGCCTGATCTACGACGACGGCCCCAAGTCCAAGCTCACCAAGGACCAAATCGACAGGAGGATCAAAACCCACAACTTACCCATCACCAAAACACTCAAGCTCTCCAAGCTCAAATCCGATTACAAGCCTTTTGAGGCCAAGCGGAAGCTGATGGAGTCGTATGATGCGTTTCTGGCTGATAAGCAGATTGTGCCGTTGCTTCCCAGGCTTTTGGGGAAGCAGTTTTTCAAGAAGAAGAGGATGATTCCGGTGCCGGTGGACTTGCAACAGAAGAACTGGAAGGAGCAGGTGGATAGGGTTATCGAGTCGGCCATGTTGTTCTTGAGTACCGGGACTTGTAGTGTTGTGAGGGTGGCCAGGACTTCGATGAGTGCGGAGCAGATTGTTGAGAATGTGGTTGCGGCGGTTGATGGGATTGTGGAGATTGTTCCGAGGAATTGGGGCGGTGTGAGGTCGTTTCATTTGAAGCTGTTGGAGTCACTTGCGCTGCCGGTGTATCAGGCTGTGCCGGATGAGACATTGTTGAAGATTGAGGGAGTTAAGGGGAGCGAGAAAGAGGTTGTGAAGAAGGAGAATAAGGATTTGAAGAATGAGAAAGCGGGTAAGAAGAAGGGTAGGATTAATGAAGTGAGGTATATGGATAGAAATGTTGGGGAGGTGCTTGATGAGGATGAGCTAGATGATGGTGTCTGTGTCAACATGGAGAAGAGGAAGAGTGAAGAAGCAAAGCTGAAGAAAGCTAAGAGGAGTAAGAATGCAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

340

Amino Acids

38.37

Weight (kDa)

9.56

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	49 - 245	3.6e-44	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	505
AccII	CGCG	2 cut(s)	8, 198
AciI	CCGC	8 cut(s)	6, 15, 397, 629, 656, 659, 699, 854
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	3 cut(s)	3, 564, 609
AcsI	RAATTY	2 cut(s)	103, 149
AcuI	CTGAAG	1 cut(s)	1007
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	190, 191
AgsI	TTSAA	5 cut(s)	211, 484, 721, 781, 841
AjnI	CCWGG	2 cut(s)	458, 611
AluBI	AGCT	9 cut(s)	20, 289, 355, 364, 403, 724, 931, 985, 995
AluI	AGCT	9 cut(s)	20, 289, 355, 364, 403, 724, 931, 985, 995
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	5 cut(s)	3, 274, 390, 564, 609
ApeKI	GCWGC	3 cut(s)	17, 742, 1013
ApoI	RAATTY	2 cut(s)	103, 149
AseI	ATTAAT	1 cut(s)	876
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	275, 298
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	4 cut(s)	145, 160, 283, 331
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	29, 729
BccI	CCATC	4 cut(s)	344, 400, 659, 932
BceAI	ACGGC	3 cut(s)	62, 289, 433
BciT130I	CCWGG	2 cut(s)	460, 613
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	1 cut(s)	932
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
BlsI	GCNGC	5 cut(s)	7, 19, 658, 744, 1015
Bme1390I	CCNGG	3 cut(s)	460, 586, 613
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	275, 298
BmiI	GGNNCC	2 cut(s)	277, 507
BmrFI	CCNGG	3 cut(s)	460, 586, 613
BmsI	GCATC	1 cut(s)	409
BpuEI	CTTGAG	3 cut(s)	158, 335, 598
BpuMI	CCSGG	1 cut(s)	586
BsaJI	CCNNGG	3 cut(s)	294, 458, 686
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 191
Bse118I	RCCGGY	2 cut(s)	508, 745
Bse1I	ACTGG	1 cut(s)	536
BseBI	CCWGG	2 cut(s)	460, 613
BseDI	CCNNGG	3 cut(s)	294, 458, 686
BseGI	GGATG	3 cut(s)	501, 772, 931
BseLI	CCNNNNNNNGG	2 cut(s)	190, 191
BseNI	ACTGG	1 cut(s)	536
BseRI	GAGGAG	5 cut(s)	12, 80, 130, 224, 1015
BseXI	GCAGC	2 cut(s)	29, 729
Bsh1236I	CGCG	2 cut(s)	8, 198
BshFI	GGCC	5 cut(s)	5, 276, 392, 566, 611
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	5 cut(s)	503, 509, 585, 746, 764
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	190, 191
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	1015
BsnI	GGCC	5 cut(s)	5, 276, 392, 566, 611
Bsp143I	GATC	3 cut(s)	127, 261, 315
BspACI	CCGC	8 cut(s)	6, 15, 397, 629, 656, 659, 699, 854
BspANI	GGCC	5 cut(s)	5, 276, 392, 566, 611
BspFNI	CGCG	2 cut(s)	8, 198
BspLI	GGNNCC	2 cut(s)	277, 507
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	508, 745
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	2 cut(s)	508, 745
BssECI	CCNNGG	3 cut(s)	294, 458, 686
BssMI	GATC	3 cut(s)	127, 261, 315
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	460, 613
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	3 cut(s)	485, 956, 962
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	996
BstF5I	GGATG	3 cut(s)	501, 772, 931
BstFNI	CGCG	2 cut(s)	8, 198
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	3 cut(s)	130, 264, 318
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	3 cut(s)	127, 261, 315
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
BstNI	CCWGG	2 cut(s)	460, 613
BstSCI	CCNGG	3 cut(s)	458, 584, 611
BstUI	CGCG	2 cut(s)	8, 198
BstV1I	GCAGC	2 cut(s)	29, 729
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	5 cut(s)	5, 276, 392, 566, 611
BtsCI	GGATG	3 cut(s)	501, 772, 931
BveI	ACCTGC	1 cut(s)	532
CfoI	GCGC	1 cut(s)	742
Cfr10I	RCCGGY	2 cut(s)	508, 745
Cfr13I	GGNCC	2 cut(s)	275, 298
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	2 cut(s)	568, 955
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	1 cut(s)	996
DpnI	GATC	3 cut(s)	129, 263, 317
DpnII	GATC	3 cut(s)	127, 261, 315
EaeI	YGGCCR	3 cut(s)	3, 564, 609
Eam1104I	CTCTTC	3 cut(s)	485, 956, 962
EarI	CTCTTC	3 cut(s)	485, 956, 962
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	1007
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	458, 611
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	571, 958
FaiI	YATR	5 cut(s)	417, 569, 891, 893, 956
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	2 cut(s)	567, 954
FauI	CCCGC	1 cut(s)	847
Fnu4HI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
FokI	GGATG	3 cut(s)	508, 779, 938
Fsp4HI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
FspBI	CTAG	1 cut(s)	932
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
HaeIII	GGCC	5 cut(s)	5, 276, 392, 566, 611
HapII	CCGG	5 cut(s)	503, 509, 585, 746, 764
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	2 cut(s)	571, 958
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	2 cut(s)	202, 952
HindII	GTYRAC	2 cut(s)	202, 952
HinfI	GANTC	6 cut(s)	137, 242, 410, 499, 560, 731
HpaII	CCGG	5 cut(s)	503, 509, 585, 746, 764
HphI	GGTGA	4 cut(s)	145, 160, 283, 331
Hpy166II	GTNNAC	3 cut(s)	202, 514, 952
Hpy188I	TCNGA	4 cut(s)	145, 241, 373, 687
Hpy188III	TCNNGA	3 cut(s)	175, 484, 577
Hpy8I	GTNNAC	3 cut(s)	202, 514, 952
Hpy99I	CGWCG	4 cut(s)	128, 149, 272, 275
HpyAV	CCTTC	5 cut(s)	39, 217, 529, 817, 859
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	520, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
HpyF3I	CTNAG	1 cut(s)	996
Hsp92II	CATG	2 cut(s)	571, 958
HspAI	GCGC	1 cut(s)	740
Kzo9I	GATC	3 cut(s)	127, 261, 315
LmnI	GCTCC	4 cut(s)	25, 538, 631, 801
Lsp1109I	GCAGC	2 cut(s)	29, 729
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	932
MaeIII	GTNAC	1 cut(s)	732
MalI	GATC	3 cut(s)	129, 263, 317
MboI	GATC	3 cut(s)	127, 261, 315
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	3 cut(s)	103, 149, 691
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	4 cut(s)	131, 419, 569, 740
MmeI	TCCRAC	2 cut(s)	168, 708
Mox20I	TGGCCA	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	2 cut(s)	795, 876
Msp20I	TGGCCA	1 cut(s)	611
MspI	CCGG	5 cut(s)	503, 509, 585, 746, 764
MspR9I	CCNGG	3 cut(s)	460, 586, 613
Mva1269I	GAATGC	1 cut(s)	1015
MvaI	CCWGG	2 cut(s)	460, 613
MvnI	CGCG	2 cut(s)	8, 198
MwoI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	3 cut(s)	127, 261, 315
NlaIII	CATG	2 cut(s)	571, 958
NlaIV	GGNNCC	2 cut(s)	277, 507
NmuCI	GTSAC	1 cut(s)	732
PaqCI	CACCTGC	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	1015
PfeI	GAWTC	2 cut(s)	242, 499
PkrI	GCNGC	5 cut(s)	7, 19, 658, 744, 1015
PleI	GAGTC	4 cut(s)	131, 418, 568, 739
PpsI	GAGTC	4 cut(s)	131, 418, 568, 739
PshBI	ATTAAT	1 cut(s)	876
Psp6I	CCWGG	2 cut(s)	458, 611
PspGI	CCWGG	2 cut(s)	458, 611
PspN4I	GGNNCC	2 cut(s)	277, 507
PspPI	GGNCC	2 cut(s)	275, 298
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	795, 876
SatI	GCNGC	5 cut(s)	6, 18, 657, 743, 1014
Sau3AI	GATC	3 cut(s)	127, 261, 315
Sau96I	GGNCC	2 cut(s)	275, 298
SchI	GAGTC	4 cut(s)	131, 419, 569, 740
ScrFI	CCNGG	3 cut(s)	460, 586, 613
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	3 cut(s)	173, 350, 577
SmoI	CTYRAG	3 cut(s)	173, 350, 577
Sse9I	AATT	3 cut(s)	103, 149, 691
SsiI	CCGC	8 cut(s)	6, 15, 397, 629, 656, 659, 699, 854
SspMI	CTAG	1 cut(s)	932
StyD4I	CCNGG	3 cut(s)	458, 584, 611
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	306, 558, 620
TasI	AATT	3 cut(s)	103, 149, 691
TauI	GCSGC	2 cut(s)	8, 659
TfiI	GAWTC	2 cut(s)	242, 499
Tru1I	TTAA	2 cut(s)	795, 876
Tru9I	TTAA	2 cut(s)	795, 876
TseFI	GTSAC	1 cut(s)	732
TseI	GCWGC	3 cut(s)	17, 742, 1013
Tsp45I	GTSAC	1 cut(s)	732
TspDTI	ATGAA	2 cut(s)	704, 894
VpaK11BI	GGWCC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	876
XapI	RAATTY	2 cut(s)	103, 149
XspI	CTAG	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.