Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Reverse (-)

19043301 .. 19046576

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGCTACGATCACTCCAGCTCCTACAGCTTCCACAACCAAACCCACCAAAGCCATCACCAAGACGGTGCGGAAAGCTGTAAATGCCCTCCTCAAATGGCGAAACTCCAAGTTGCAGACCGAGAAACCGGATCTCTTAGAATCCGACGAGTTCGCCTATCTCGTTCTCACCCTCAAGAAAATCCCACCAAAGGCTCGCATAAACGCCTACAAAGTCCCTCTCCCAAATCCTCTCCATTCTCAGCTCTCCGAGCTCTGCTTGATATACGACGATGGACCCAAGTCCAATCTCACCAAGGATTTCATCCAAAAGAAAATCAAGGCCGAGAACATACCCATCTCGAAAATTTTGAAGCTTTCGAAGCTCAAGACTGATTACGTGCCCTTTGAAGCCAAGAGGAAGCTGTTGTATTCTTATGATATGTTTTTGGCTGATAGGCGGATTGTGCCTTTGCTTCCGAAGTATTTGGGGAAGCAGTTTTTTAAGAAGAAGAAGATTCCGGTTCCTGTGGACTTGGAGCACAAGAATTGGAAAGAGCAGGTTGACAAGGCATGTGGGTCGGCCTTGTTGTTCTTGAGTACCGGGACGTGCAGCGTGGTCAGGGTAGCGAAGGTGTCGATGAGCGTTGATGAGATTGTGGAGAATGTGCTTGCGGCGATTAATGGGATTGTGGAGATTGTGCCTAAGAAGTGGAGGGATGTGAGGTCATTTCACTTGAAGTTTCTGGAGTCGCTTGCATTGCCGGTTTACCAGGCCGTGCCCGATTTGACATTGAAGATTGAGGGAGCTAAGAGTGATGAGGAAGGTAAGGAGGAAGTGAAAAAGGTTGTTAAGTCTGAGAGTAAGAGTTTGAAGAGTGAGAAAGTGAGTAAGAAGAAGGGTAGAATTCATGAAGTGAGGTATATGGATAGCAATGCTGGTGAGGTGCTTGATGATGATGAAGTGGTTGCTGAAGGGGATATTGGAGATGGTAAGCAACGTGAGAATGAAGAACCGGGTAATGGTGAATTGGGGAAGAAGAAGAGGAAGAAGGAAAAGGTTGTTGGTGAGTCTAAGGGTGACAAAAGGTTGAAGAAATCAGCTAAGGTGAAAGATGATGCTGAACTAAATGGGGAAAAGGGTGAGTTTAACAATGAGAAACAGTTGAAAAAGTCGGCTAAGGTGAAAGATGGAGATGATGAGGTTCCTGTTGAGAAACAGTTGAAAATTTTGGCTAAGATGGTAGATGAAGATGATGCCACTATCAAGCATAAGAAAGATGGGTTGTCTTCGAAGGGGAAGAAACAAGATGTTACAAAGATGAAAGCAGATGATTTGCCAGTCAAGGGCGAAGAGTCTGTTGGAAAGAAGGAGAAGAGGAAGAGTGAACATGTGAAGTTGAAGAGCGGAGAAGCAAAGCCGAAGATGGCTAAGAGAAGTAAGAAAGCAATAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

479

Amino Acids

53.6

Weight (kDa)

9.57

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	529
AccBSI	CCGCTC	1 cut(s)	1386
AciI	CCGC	4 cut(s)	70, 439, 653, 1386
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	3 cut(s)	345, 885, 1206
AcuI	CTGAAG	1 cut(s)	972
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	3 cut(s)	190, 1001, 1325
AflIII	ACRYGT	1 cut(s)	1369
AgsI	TTSAA	9 cut(s)	352, 389, 718, 775, 853, 1072, 1147, 1204, 1381
AjiI	CACGTC	1 cut(s)	588
AjnI	CCWGG	1 cut(s)	750
AjuI	GAANNNNNNNTTGG	6 cut(s)	945, 977, 1026, 1058, 1323, 1355
Alw21I	GWGCWC	2 cut(s)	255, 522
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	3 cut(s)	321, 561, 753
ApeKI	GCWGC	1 cut(s)	591
ApoI	RAATTY	3 cut(s)	345, 885, 1206
AseI	ATTAAT	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	2 cut(s)	583, 996
AsuII	TTCGAA	2 cut(s)	359, 1271
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	2 cut(s)	384, 762
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	1260
Bbv12I	GWGCWC	2 cut(s)	255, 522
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	8 cut(s)	62, 266, 344, 962, 1163, 1213, 1253, 1399
BceAI	ACGGC	1 cut(s)	740
BcgI	CGANNNNNNTGC	2 cut(s)	540, 574
BciT130I	CCWGG	1 cut(s)	752
BcnI	CCSGG	2 cut(s)	583, 996
BfmI	CTRYAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	2 cut(s)	592, 654
BlsI	GCNGC	2 cut(s)	593, 655
Bme1390I	CCNGG	3 cut(s)	583, 752, 996
Bme18I	GGWCC	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	277, 504, 1185
BmrFI	CCNGG	3 cut(s)	583, 752, 996
BmsI	GCATC	2 cut(s)	1087, 1225
BoxI	GACNNNNGTC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	1260
BpmI	CTGGAG	1 cut(s)	746
Bpu10I	CCTNAGC	2 cut(s)	1083, 1158
Bpu14I	TTCGAA	2 cut(s)	359, 1271
BpuEI	CTTGAG	3 cut(s)	158, 350, 595
BpuMI	CCSGG	2 cut(s)	583, 996
BsaAI	YACGTR	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	2 cut(s)	127, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 34
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 1001, 1325
Bse118I	RCCGGY	1 cut(s)	742
Bse1I	ACTGG	1 cut(s)	1319
Bse3DI	GCAATG	2 cut(s)	737, 919
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	303, 703
BseLI	CCNNNNNNNGG	3 cut(s)	190, 1001, 1325
BseMI	GCAATG	2 cut(s)	737, 919
BseMII	CTCAG	2 cut(s)	254, 828
BseNI	ACTGG	1 cut(s)	1319
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	2 cut(s)	384, 762
BseXI	GCAGC	1 cut(s)	603
BsgI	GTGCAG	1 cut(s)	610
BshFI	GGCC	3 cut(s)	323, 563, 755
BsiHKAI	GWGCWC	2 cut(s)	255, 522
BsiSI	CCGG	5 cut(s)	128, 500, 582, 743, 995
BslFI	GGGAC	2 cut(s)	200, 598
BslI	CCNNNNNNNGG	3 cut(s)	190, 1001, 1325
BsmFI	GGGAC	2 cut(s)	200, 598
BsnI	GGCC	3 cut(s)	323, 563, 755
Bsp119I	TTCGAA	2 cut(s)	359, 1271
Bsp1286I	GDGCHC	4 cut(s)	255, 384, 522, 762
Bsp143I	GATC	2 cut(s)	9, 130
BspACI	CCGC	4 cut(s)	70, 439, 653, 1386
BspANI	GGCC	3 cut(s)	323, 563, 755
BspCNI	CTCAG	2 cut(s)	253, 829
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	3 cut(s)	277, 504, 1185
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	138
BspQI	GCTCTTC	1 cut(s)	1376
BspT104I	TTCGAA	2 cut(s)	359, 1271
BsrBI	CCGCTC	1 cut(s)	1386
BsrDI	GCAATG	2 cut(s)	737, 919
BsrFI	RCCGGY	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	1319
BssAI	RCCGGY	1 cut(s)	742
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	9, 130
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	3 cut(s)	67, 1143, 1200
Bst6I	CTCTTC	6 cut(s)	848, 1016, 1326, 1349, 1355, 1376
BstBAI	YACGTR	1 cut(s)	379
BstBI	TTCGAA	2 cut(s)	359, 1271
BstC8I	GCNNGC	3 cut(s)	196, 651, 735
BstF5I	GGATG	2 cut(s)	303, 703
BstKTI	GATC	2 cut(s)	12, 133
BstMBI	GATC	2 cut(s)	9, 130
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 83, 250, 361, 445, 739
BstNI	CCWGG	1 cut(s)	752
BstNSI	RCATGY	2 cut(s)	555, 1373
BstPAI	GACNNNNGTC	1 cut(s)	280
BstSCI	CCNGG	3 cut(s)	581, 750, 994
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	2 cut(s)	384, 762
BstV1I	GCAGC	1 cut(s)	603
BstV2I	GAAGAC	1 cut(s)	1260
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	323, 563, 755
BtrI	CACGTC	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	303, 703
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	3 cut(s)	196, 651, 735
CciI	TCATGA	1 cut(s)	889
Cfr10I	RCCGGY	1 cut(s)	742
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	579
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	3 cut(s)	552, 890, 1370
CviQI	GTAC	1 cut(s)	579
DpnI	GATC	2 cut(s)	11, 132
DpnII	GATC	2 cut(s)	9, 130
Eam1104I	CTCTTC	6 cut(s)	848, 1016, 1326, 1349, 1355, 1376
EarI	CTCTTC	6 cut(s)	848, 1016, 1326, 1349, 1355, 1376
EciI	GGCGGA	1 cut(s)	454
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	972
EcoICRI	GAGCTC	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	885
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	555, 893, 1373
FaqI	GGGAC	2 cut(s)	200, 598
FatI	CATG	3 cut(s)	551, 889, 1369
Fnu4HI	GCNGC	2 cut(s)	592, 654
FokI	GGATG	2 cut(s)	290, 710
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	592, 654
GluI	GCNGC	2 cut(s)	592, 654
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	3 cut(s)	323, 563, 755
HapII	CCGG	5 cut(s)	128, 500, 582, 743, 995
Hin1II	CATG	3 cut(s)	555, 893, 1373
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	5 cut(s)	140, 496, 728, 1049, 1334
HpaII	CCGG	5 cut(s)	128, 500, 582, 743, 995
Hpy166II	GTNNAC	4 cut(s)	511, 544, 748, 1367
Hpy188I	TCNGA	4 cut(s)	145, 250, 459, 838
Hpy188III	TCNNGA	6 cut(s)	175, 340, 367, 574, 725, 890
Hpy8I	GTNNAC	4 cut(s)	511, 544, 748, 1367
Hpy99I	CGWCG	2 cut(s)	149, 272
HpyAV	CCTTC	7 cut(s)	604, 797, 871, 947, 1024, 1267, 1342
HpyCH4III	ACNGT	3 cut(s)	67, 1143, 1200
HpyCH4IV	ACGT	3 cut(s)	378, 587, 979
HpyCH4V	TGCA	3 cut(s)	115, 591, 737
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 83, 250, 361, 445, 739
HpySE526I	ACGT	3 cut(s)	378, 587, 979
Hsp92II	CATG	3 cut(s)	555, 893, 1373
Kzo9I	GATC	2 cut(s)	9, 130
LguI	GCTCTTC	1 cut(s)	1376
LmnI	GCTCC	3 cut(s)	25, 517, 785
Lsp1109I	GCAGC	1 cut(s)	603
LweI	GCATC	2 cut(s)	1087, 1225
MaeII	ACGT	3 cut(s)	378, 587, 979
MaeIII	GTNAC	2 cut(s)	1058, 1291
MalI	GATC	2 cut(s)	11, 132
MbiI	CCGCTC	1 cut(s)	1386
MboI	GATC	2 cut(s)	9, 130
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	4 cut(s)	255, 384, 522, 762
MluCI	AATT	5 cut(s)	345, 526, 885, 1007, 1206
MlyI	GAGTC	3 cut(s)	737, 1058, 1343
MmeI	TCCRAC	2 cut(s)	168, 1321
MseI	TTAA	4 cut(s)	483, 660, 831, 1128
MspI	CCGG	5 cut(s)	128, 500, 582, 743, 995
MspR9I	CCNGG	3 cut(s)	583, 752, 996
MvaI	CCWGG	1 cut(s)	752
MwoI	GCNNNNNNNGC	6 cut(s)	26, 83, 250, 361, 445, 739
NciI	CCSGG	2 cut(s)	583, 996
NdeII	GATC	2 cut(s)	9, 130
NlaIII	CATG	3 cut(s)	555, 893, 1373
NlaIV	GGNNCC	3 cut(s)	277, 504, 1185
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	1058
NspI	RCATGY	2 cut(s)	555, 1373
NspV	TTCGAA	2 cut(s)	359, 1271
PagI	TCATGA	1 cut(s)	889
PciI	ACATGT	1 cut(s)	1369
PciSI	GCTCTTC	1 cut(s)	1376
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	140, 496
PkrI	GCNGC	2 cut(s)	593, 655
PleI	GAGTC	3 cut(s)	736, 1057, 1342
PpsI	GAGTC	3 cut(s)	736, 1057, 1342
Ppu21I	YACGTR	1 cut(s)	379
PscI	ACATGT	1 cut(s)	1369
PshAI	GACNNNNGTC	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	3 cut(s)	277, 504, 1185
PspPI	GGNCC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	1376
SaqAI	TTAA	4 cut(s)	483, 660, 831, 1128
SatI	GCNGC	2 cut(s)	592, 654
Sau3AI	GATC	2 cut(s)	9, 130
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	3 cut(s)	737, 1058, 1343
ScrFI	CCNGG	3 cut(s)	583, 752, 996
SduI	GDGCHC	4 cut(s)	255, 384, 522, 762
SfaNI	GCATC	2 cut(s)	1087, 1225
SfcI	CTRYAG	1 cut(s)	24
SfuI	TTCGAA	2 cut(s)	359, 1271
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	3 cut(s)	173, 365, 574
SmoI	CTYRAG	3 cut(s)	173, 365, 574
Sse9I	AATT	5 cut(s)	345, 526, 885, 1007, 1206
SsiI	CCGC	4 cut(s)	70, 439, 653, 1386
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	581, 750, 994
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	67, 1143, 1200
TaiI	ACGT	3 cut(s)	381, 590, 982
TaqI	TCGA	4 cut(s)	341, 359, 617, 1271
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	5 cut(s)	345, 526, 885, 1007, 1206
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	2 cut(s)	140, 496
Tru1I	TTAA	4 cut(s)	483, 660, 831, 1128
Tru9I	TTAA	4 cut(s)	483, 660, 831, 1128
TseFI	GTSAC	1 cut(s)	1058
TseI	GCWGC	1 cut(s)	591
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	7 cut(s)	292, 878, 906, 954, 1002, 1242, 1316
VpaK11BI	GGWCC	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	3 cut(s)	345, 885, 1206
XceI	RCATGY	2 cut(s)	555, 1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.