Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Reverse (-)

65385335 .. 65387469

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGCCGCCGCAATCACCCCAGCTCCTTCGTCCTCCACCGCAACACCCACCAAAGTGTCCCCCAAGACGGCCCGAAATGCCGTGAATGCCCTTCTGAAATGGCGAAATTCCAAGTCGGAGGCCCAGAAACCCGATATCCTCTCCTCCGACGAACTAGTCTACCTCGTCGTGAGCCTCAAGAAAATCCCACCCAAGGGCCGCGTCAACGCCTACAAAATCCCCCTCCCGACTCCCCTCCACTCCCAGCTCACCGAGTTCTGCCTCATCTACGACGACCGGCCCAAGTCCAAGCTCACCAAGGCCCAAATTCAGGCCAAGATCAAGGCCGACAACTTGCCCGTAGTTAAAATCTTGAAGTACACCAAGCTGAAATCAGATTACAAGGCTTTCGAGTCGAAAAGGAAGCTGCTCAACTCGTATGATGTGTTTCTTGCTGATAAGCAGATCGTGCCATTGCTCCCGAGGCTCATCGGGAAGCAGTTCTTCAAGAAGAAGAAGATTCCGGTGCCGGTGGACTTGTTGCACAAGAATTGGAAGGAGCAGATTGATCGGATATGCGGCTCGGCGTTGTTGTTCTTGAGTACGGGGACTTGCAGCGTGGTGAGGGTGGCCAGGACTTCGATGAGGGAGGAGGAGATTGTGGAGAATGTGGTTTCCGCGATTAGTGGGATTGTGGACATTGTGCCCGGGAATTGGGGCGGTGTGAGGTCGTTGCATTTGAAGCTATTGGAGTCGATTCCGCTGCCGCTTTATCAGACTCTGCCAGATGAGGCGGTGAAGGTGGAGGGGGGTGAGAAAGTTGTGGAGGAAGTTAAGGAGGCTGGCAAGGGTGAGAGTAAGGAATTGAAGAAGGAGAAGGTGGGGAAGAAGAAGGGGATGATTCATGAAGTGAGGTATTTGGATAGCAGTGCTGGTGAGGTGGTTGATGAGGTGAAATCGGGTAAGGATAGTGTTGGGGAAGGTAAGGTTGATGTGGATGAGCAACTGGGTGGTGGTGAGTTGAAGACAGCGAAGAGGAAGAAGGAGAAGGTTGTTGGTGAGTCCAATGGTAAAGCTAGTGAGAATGATGGTGAGTTGAGGAAGTCGAAGAGGAACAAGGAGAAGGTTGTTGGTGAGTTGAAGAGGTCAGAGGAACAGATGGAGAAGTTAGCTAAGGTGGTAGATGAAGATTGTGATTTTGATGTGGAAGTTGCTGAGAAGCGTACGAAGAAGGTGGTTAATCCTAAGTCGGGTAAGGTGAAAGGTGAAGATGTTGAGAAACAGTTGAAAAAGTCGGCTAAGGCGAAAGATGTTGCTTTGAATGGGGAGAAACCATTGAAGAAGTCGGGTAAGGTGAAAGATGATGCTGGCACCATTGTCAAGCATAAAAATGATGAGTTGTCTGCAAAAGACAAGAAAAAAGATGTTATAAAGAAGAAAGGAGATGAGTTGTCTGGCAAAGGCGGACAGGCTGTAGGAAAGAAGGAGAAGAGGAAGAGTGAGCCTGTTAAGTTGAAGAGTGAAGAGGCAAAGCTCAAGAAAGCCAAGAGAAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

512

Amino Acids

56.52

Weight (kDa)

9.67

Isoelectric Point (pI)

25.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	42 - 245	1.7e-44	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1409
AasI	GACNNNNNNGTC	1 cut(s)	155
AccB1I	GGYRCC	2 cut(s)	505, 1349
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	2 cut(s)	201, 659
AcoI	YGGCCR	2 cut(s)	3, 609
AcsI	RAATTY	2 cut(s)	106, 306
AfaI	GTAC	3 cut(s)	359, 583, 1204
AfiI	CCNNNNNNNGG	6 cut(s)	67, 193, 194, 310, 693, 1229
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	611
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	9 cut(s)	23, 247, 292, 367, 406, 724, 1055, 1151, 1513
AluI	AGCT	9 cut(s)	23, 247, 292, 367, 406, 724, 1055, 1151, 1513
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	2 cut(s)	460, 686
AoxI	GGCC	9 cut(s)	3, 69, 120, 196, 278, 300, 312, 324, 609
ApeKI	GCWGC	3 cut(s)	406, 594, 742
ApoI	RAATTY	2 cut(s)	106, 306
Asp700I	GAANNNNTTC	1 cut(s)	479
AspS9I	GGNCC	5 cut(s)	70, 121, 196, 279, 301
AsuC2I	CCSGG	2 cut(s)	687, 688
AvaI	CYCGRG	2 cut(s)	460, 686
BaeGI	GKGCMC	1 cut(s)	687
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	505, 1349
BbsI	GAAGAC	1 cut(s)	1010
BbvI	GCAGC	3 cut(s)	393, 606, 729
BccI	CCATC	2 cut(s)	1061, 1132
BceAI	ACGGC	2 cut(s)	65, 84
BcgI	CGANNNNNNTGC	4 cut(s)	530, 564, 724, 758
BciT130I	CCWGG	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	687, 688
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	2 cut(s)	155, 1056
BfmI	CTRYAG	1 cut(s)	1452
BisI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
BlsI	GCNGC	8 cut(s)	7, 10, 200, 408, 560, 596, 744, 747
Bme1390I	CCNGG	3 cut(s)	613, 687, 688
BmeT110I	CYCGRG	2 cut(s)	460, 686
BmgT120I	GGNCC	5 cut(s)	70, 121, 196, 279, 301
BmiI	GGNNCC	2 cut(s)	507, 1351
BmrFI	CCNGG	3 cut(s)	613, 687, 688
BmrI	ACTGGG	1 cut(s)	995
BmsI	GCATC	1 cut(s)	1333
BmuI	ACTGGG	1 cut(s)	995
BpiI	GAAGAC	1 cut(s)	1010
Bpu10I	CCTNAGC	2 cut(s)	1152, 1278
BpuEI	CTTGAG	3 cut(s)	161, 598, 1499
BpuMI	CCSGG	2 cut(s)	687, 688
BsaJI	CCNNGG	4 cut(s)	192, 297, 461, 686
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 193, 194, 310, 693, 1229
Bse118I	RCCGGY	2 cut(s)	276, 508
Bse1I	ACTGG	1 cut(s)	990
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	4 cut(s)	192, 297, 461, 686
BseGI	GGATG	2 cut(s)	882, 982
BseLI	CCNNNNNNNGG	6 cut(s)	67, 193, 194, 310, 693, 1229
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	1185
BseNI	ACTGG	1 cut(s)	990
BseRI	GAGGAG	3 cut(s)	133, 644, 647
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	393, 606, 729
BseYI	CCCAGC	2 cut(s)	19, 243
Bsh1236I	CGCG	2 cut(s)	201, 659
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
BshNI	GGYRCC	2 cut(s)	505, 1349
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	2 cut(s)	460, 686
BsiSI	CCGG	4 cut(s)	277, 503, 509, 687
BsiWI	CGTACG	1 cut(s)	1202
BslFI	GGGAC	2 cut(s)	43, 601
BslI	CCNNNNNNNGG	6 cut(s)	67, 193, 194, 310, 693, 1229
BsmFI	GGGAC	2 cut(s)	43, 601
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
BsoBI	CYCGRG	2 cut(s)	460, 686
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	318, 444, 547
BspANI	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
BspCNI	CTCAG	1 cut(s)	1186
BspFNI	CGCG	2 cut(s)	201, 659
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	2 cut(s)	507, 1351
BspT107I	GGYRCC	2 cut(s)	505, 1349
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	276, 508
BsrI	ACTGG	1 cut(s)	990
BssAI	RCCGGY	2 cut(s)	276, 508
BssECI	CCNNGG	4 cut(s)	192, 297, 461, 686
BssMI	GATC	3 cut(s)	318, 444, 547
BssT1I	CCWWGG	2 cut(s)	192, 297
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	1 cut(s)	1263
Bst6I	CTCTTC	7 cut(s)	1007, 1082, 1115, 1463, 1469, 1490, 1497
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	823, 1348
BstDEI	CTNAG	4 cut(s)	1152, 1194, 1224, 1278
BstF5I	GGATG	2 cut(s)	882, 982
BstFNI	CGCG	2 cut(s)	201, 659
BstKTI	GATC	3 cut(s)	321, 447, 550
BstMBI	GATC	3 cut(s)	318, 444, 547
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 86, 448, 463, 721
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	3 cut(s)	611, 685, 686
BstSFI	CTRYAG	1 cut(s)	1452
BstSLI	GKGCMC	1 cut(s)	687
BstUI	CGCG	2 cut(s)	201, 659
BstV1I	GCAGC	3 cut(s)	393, 606, 729
BstV2I	GAAGAC	1 cut(s)	1010
BsuRI	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
BtsCI	GGATG	2 cut(s)	882, 982
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	1 cut(s)	913
Cac8I	GCNNGC	2 cut(s)	823, 1348
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	883
Cfr10I	RCCGGY	2 cut(s)	276, 508
Cfr13I	GGNCC	5 cut(s)	70, 121, 196, 279, 301
Cfr9I	CCCGGG	1 cut(s)	686
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	358, 582, 1203
CviAII	CATG	1 cut(s)	884
CviQI	GTAC	3 cut(s)	358, 582, 1203
DdeI	CTNAG	4 cut(s)	1152, 1194, 1224, 1278
DpnI	GATC	3 cut(s)	320, 446, 549
DpnII	GATC	3 cut(s)	318, 444, 547
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	3, 609
Eam1104I	CTCTTC	7 cut(s)	1007, 1082, 1115, 1463, 1469, 1490, 1497
EarI	CTCTTC	7 cut(s)	1007, 1082, 1115, 1463, 1469, 1490, 1497
EciI	GGCGGA	1 cut(s)	1458
Eco130I	CCWWGG	2 cut(s)	192, 297
Eco32I	GATATC	1 cut(s)	136
Eco88I	CYCGRG	2 cut(s)	460, 686
EcoRII	CCWGG	1 cut(s)	611
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	192, 297
ErhI	CCWWGG	2 cut(s)	192, 297
FaeI	CATG	1 cut(s)	887
FaiI	YATR	5 cut(s)	420, 556, 885, 1365, 1409
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	2 cut(s)	43, 601
FatI	CATG	1 cut(s)	883
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
FokI	GGATG	2 cut(s)	889, 989
Fsp4HI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
FspBI	CTAG	2 cut(s)	155, 1056
GluI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
GsaI	CCCAGC	2 cut(s)	23, 247
HaeIII	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
HapII	CCGG	4 cut(s)	277, 503, 509, 687
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	887
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	8 cut(s)	229, 392, 499, 731, 736, 757, 880, 1040
HpaII	CCGG	4 cut(s)	277, 503, 509, 687
Hpy166II	GTNNAC	5 cut(s)	160, 205, 360, 514, 676
Hpy188I	TCNGA	7 cut(s)	96, 118, 148, 376, 552, 756, 1129
Hpy8I	GTNNAC	5 cut(s)	160, 205, 360, 514, 676
Hpy99I	CGWCG	3 cut(s)	152, 170, 275
HpyCH4III	ACNGT	1 cut(s)	1263
HpyCH4V	TGCA	4 cut(s)	523, 594, 715, 1385
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 86, 448, 463, 721
HpyF3I	CTNAG	4 cut(s)	1152, 1194, 1224, 1278
Hsp92II	CATG	1 cut(s)	887
Kzo9I	GATC	3 cut(s)	318, 444, 547
LmnI	GCTCC	3 cut(s)	28, 462, 538
Lsp1109I	GCAGC	3 cut(s)	393, 606, 729
LweI	GCATC	1 cut(s)	1333
MaeI	CTAG	2 cut(s)	155, 1056
MalI	GATC	3 cut(s)	320, 446, 549
MboI	GATC	3 cut(s)	318, 444, 547
MhlI	GDGCHC	1 cut(s)	687
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	5 cut(s)	106, 306, 529, 691, 842
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	5 cut(s)	223, 401, 740, 751, 1049
MmeI	TCCRAC	2 cut(s)	96, 171
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	4 cut(s)	345, 813, 1218, 1488
MslI	CAYNNNNRTG	2 cut(s)	53, 1368
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	4 cut(s)	277, 503, 509, 687
MspR9I	CCNGG	3 cut(s)	613, 687, 688
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	613
MvnI	CGCG	2 cut(s)	201, 659
MwoI	GCNNNNNNNGC	5 cut(s)	77, 86, 448, 463, 721
NciI	CCSGG	2 cut(s)	687, 688
NdeII	GATC	3 cut(s)	318, 444, 547
NlaIII	CATG	1 cut(s)	887
NlaIV	GGNNCC	2 cut(s)	507, 1351
NmeAIII	GCCGAG	1 cut(s)	542
OliI	CACNNNNGTG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	1 cut(s)	1280
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	499, 736, 880
Pfl23II	CGTACG	1 cut(s)	1202
PkrI	GCNGC	8 cut(s)	7, 10, 200, 408, 560, 596, 744, 747
PleI	GAGTC	5 cut(s)	223, 400, 739, 751, 1048
PpsI	GAGTC	5 cut(s)	223, 400, 739, 751, 1048
PsiI	TTATAA	1 cut(s)	1409
Psp6I	CCWGG	1 cut(s)	611
PspFI	CCCAGC	2 cut(s)	19, 243
PspGI	CCWGG	1 cut(s)	611
PspLI	CGTACG	1 cut(s)	1202
PspN4I	GGNNCC	2 cut(s)	507, 1351
PspPI	GGNCC	5 cut(s)	70, 121, 196, 279, 301
PstNI	CAGNNNCTG	1 cut(s)	760
RsaI	GTAC	3 cut(s)	359, 583, 1204
RsaNI	GTAC	3 cut(s)	358, 582, 1203
RseI	CAYNNNNRTG	2 cut(s)	53, 1368
SaqAI	TTAA	4 cut(s)	345, 813, 1218, 1488
SatI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
Sau3AI	GATC	3 cut(s)	318, 444, 547
Sau96I	GGNCC	5 cut(s)	70, 121, 196, 279, 301
SchI	GAGTC	5 cut(s)	223, 401, 740, 751, 1049
ScrFI	CCNGG	3 cut(s)	613, 687, 688
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	1 cut(s)	1333
SfcI	CTRYAG	1 cut(s)	1452
SmaI	CCCGGG	1 cut(s)	688
SmiMI	CAYNNNNRTG	2 cut(s)	53, 1368
SmlI	CTYRAG	3 cut(s)	176, 577, 1514
SmoI	CTYRAG	3 cut(s)	176, 577, 1514
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	5 cut(s)	106, 306, 529, 691, 842
SspMI	CTAG	2 cut(s)	155, 1056
StyD4I	CCNGG	3 cut(s)	611, 685, 686
StyI	CCWWGG	2 cut(s)	192, 297
TaaI	ACNGT	1 cut(s)	1263
TaqI	TCGA	5 cut(s)	390, 395, 620, 734, 1085
TasI	AATT	5 cut(s)	106, 306, 529, 691, 842
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	5 cut(s)	8, 11, 201, 561, 748
TfiI	GAWTC	3 cut(s)	499, 736, 880
Tru1I	TTAA	4 cut(s)	345, 813, 1218, 1488
Tru9I	TTAA	4 cut(s)	345, 813, 1218, 1488
TscAI	CASTG	1 cut(s)	913
TseI	GCWGC	3 cut(s)	406, 594, 742
TspDTI	ATGAA	3 cut(s)	872, 900, 1179
TspMI	CCCGGG	1 cut(s)	686
TspRI	CASTG	1 cut(s)	913
XapI	RAATTY	2 cut(s)	106, 306
XmaI	CCCGGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	2 cut(s)	155, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.