Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Forward (+)

17688159 .. 17689688

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGCCGCCGCAATCACCCCAGCTCCTTCGTCCTCCACCCCAACACCTACCAAAGTGTCCCCCAAGACGGCCCGAAATGCCGTGAATGCCCTTCTGAAATGGCGAAATTCCAAGTCGGAGGCCCAGAAACCCGATCTCCTGTCCTCCGACGAACTAGTCTACCTCGTCGTGAGCCTGAAGAAAATCCCACCCAAGGGGCGCGTCAACGCCTACAAAATCCCCCTCCCGACTCCCCTCCACTCCCAGCTCACCGAGTTCTGCCTCATCTACGACGACCGGCCCAAGTCCAAGCTCACCAAGGCCCAAATTCAGGCCAAGATCAAGGCCGAGAACCTGCCCGTAGTCAAAATCTTGAAGTACACCAAGCTGAAATCAGATTACAAGGCTTTCGAGTCGAAAAGGAAGCTGCTCAACTCGTATGATGTGTTTCTTGCTGATAAGCAGATCGTGCCATTGCTGCCGAGGCTGATCGGGAAGCAGTTCTTCAAGAAGAAGAAGATTCCGGTGCCGGTGGACTTGTTGCACAAGAATTGGAAGGAGCAGATTGATCGGATATGCGGCTCGGCGTTGTTGTTCTTGAGTACTGGGACTTGCAGTGTGGTGAGGGTGGCGAGGACTTCGATGAGGGAGGAGGAGATTGTGGAGAATGTGGTTTCGGCGATTAGTGGGATTGTGGACATTGTGCCCGGGAATTGGGGCGGTGTGAGGTCGTTGCATTTGAAGCTATTGGAGTCCATTCCGCTGCCGCTTTATCAGACTCTGCCGGATGAGGCGGTGAAGGTGGAGGGGGGTGAGAAAGTTGTGGAGGAAGTTAAGGAGGCTGGGAAGGGTGAGAGTAAGGAATTGAAGAAGGAGAAGGTGGGGAAGAAGAAGGGGAGGATTCATGAAGTGAGGTATTTGGATAGCAGTGCTGCTGAGGTGGTTGATGAGGTGAAATCGGGTAAGGATAGTGTTGGCGAAGGTAAGGTTGATGTGGATGAGCAACTGGGTGCTGGTGAGTTGAAGAAGGCGAAGAGGAAGAAGGAGAAGGTGGTTGGTGAGTCCAATGGTAAAGCTAGTGAGAATGATGGTGAGTTGAGGAAGTCGAAGAGGAACAAGGAGAAGGTTGTTGGTGAGTCTAAGAGGTCAAAGGAACAGATGGAGAAGTTAGCTAAGTTGGTAGATGAAGATAGTGATTTTGATGTGGAAGTTGCTGAGAAGCGTACAAAGAAGGTGGTTAATCCTAAGGTGAAAGGTGAAGATGTTGAGAAACAGTTGAAAAAGTCGACTAAGGCGAAAGATGTTGCTTTGAATGGGGAGAAACCATTGAAGAAGTCGGGTAAGGTGAAAGATGATGCTGGCACCATTGTCAAGCACAAAAATGATGACTTGTCTGCGAAAGACAAGAAAAAAGATGTTATAAAGAAGAAAGGAGATGAGTTGTCTGGCAAAGGCGGACAGGCTGTAGGAAAGAAGGAGAAGAGGAAGAGTGAGCCTGTGAAGTTGAAGAGTGAAGAAGCAAAGCTCAAGAAAGCCAAGAGAAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

509

Amino Acids

56.35

Weight (kDa)

9.74

Isoelectric Point (pI)

24.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	42 - 245	1e-44	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1400
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	505, 1340
AccI	GTMKAC	2 cut(s)	159, 1265
AccII	CGCG	1 cut(s)	201
AciI	CCGC	8 cut(s)	6, 9, 558, 699, 740, 746, 773, 1434
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	106, 306
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	3 cut(s)	359, 583, 1204
AfiI	CCNNNNNNNGG	5 cut(s)	67, 193, 194, 310, 693
AgsI	TTSAA	9 cut(s)	355, 487, 721, 847, 1003, 1258, 1291, 1309, 1486
AhlI	ACTAGT	1 cut(s)	154
AluBI	AGCT	9 cut(s)	23, 247, 292, 367, 406, 724, 1055, 1151, 1504
AluI	AGCT	9 cut(s)	23, 247, 292, 367, 406, 724, 1055, 1151, 1504
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	7 cut(s)	3, 69, 120, 278, 300, 312, 324
ApeKI	GCWGC	4 cut(s)	406, 457, 742, 911
ApoI	RAATTY	2 cut(s)	106, 306
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	4 cut(s)	70, 121, 279, 301
AsuC2I	CCSGG	2 cut(s)	687, 688
AvaI	CYCGRG	1 cut(s)	686
AxyI	CCTNAGG	1 cut(s)	1224
BaeGI	GKGCMC	1 cut(s)	687
BanI	GGYRCC	2 cut(s)	505, 1340
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	4 cut(s)	393, 444, 729, 898
BccI	CCATC	2 cut(s)	1061, 1132
BceAI	ACGGC	2 cut(s)	65, 84
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BcnI	CCSGG	2 cut(s)	687, 688
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	2 cut(s)	155, 1056
BfmI	CTRYAG	1 cut(s)	1443
BfuAI	ACCTGC	1 cut(s)	342
BisI	GCNGC	8 cut(s)	6, 9, 407, 458, 559, 743, 746, 912
BlsI	GCNGC	8 cut(s)	7, 10, 408, 459, 560, 744, 747, 913
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	687, 688
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	4 cut(s)	70, 121, 279, 301
BmiI	GGNNCC	2 cut(s)	507, 1342
BmrFI	CCNGG	2 cut(s)	687, 688
BmrI	ACTGGG	2 cut(s)	594, 995
BmsI	GCATC	1 cut(s)	1324
BmuI	ACTGGG	2 cut(s)	594, 995
Bpu10I	CCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	2 cut(s)	598, 1490
BpuMI	CCSGG	2 cut(s)	687, 688
BsaJI	CCNNGG	4 cut(s)	192, 297, 461, 686
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 120, 150
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 193, 194, 310, 693
Bse118I	RCCGGY	2 cut(s)	276, 508
Bse1I	ACTGG	2 cut(s)	589, 990
Bse21I	CCTNAGG	1 cut(s)	1224
Bse3DI	GCAATG	1 cut(s)	452
BseDI	CCNNGG	4 cut(s)	192, 297, 461, 686
BseGI	GGATG	2 cut(s)	772, 982
BseLI	CCNNNNNNNGG	5 cut(s)	67, 193, 194, 310, 693
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	906, 1185
BseNI	ACTGG	2 cut(s)	589, 990
BseRI	GAGGAG	2 cut(s)	644, 647
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	4 cut(s)	393, 444, 729, 898
BseYI	CCCAGC	3 cut(s)	19, 243, 821
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	7 cut(s)	5, 71, 122, 280, 302, 314, 326
BshNI	GGYRCC	2 cut(s)	505, 1340
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	5 cut(s)	277, 503, 509, 687, 764
BslFI	GGGAC	2 cut(s)	43, 601
BslI	CCNNNNNNNGG	5 cut(s)	67, 193, 194, 310, 693
BsmFI	GGGAC	2 cut(s)	43, 601
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	7 cut(s)	5, 71, 122, 280, 302, 314, 326
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	5 cut(s)	133, 318, 444, 468, 547
BspACI	CCGC	8 cut(s)	6, 9, 558, 699, 740, 746, 773, 1434
BspANI	GGCC	7 cut(s)	5, 71, 122, 280, 302, 314, 326
BspCNI	CTCAG	2 cut(s)	907, 1186
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	2 cut(s)	507, 1342
BspMI	ACCTGC	1 cut(s)	342
BspT107I	GGYRCC	2 cut(s)	505, 1340
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	276, 508
BsrI	ACTGG	2 cut(s)	589, 990
BssAI	RCCGGY	2 cut(s)	276, 508
BssECI	CCNNGG	4 cut(s)	192, 297, 461, 686
BssMI	GATC	5 cut(s)	133, 318, 444, 468, 547
BssT1I	CCWWGG	2 cut(s)	192, 297
Bst4CI	ACNGT	1 cut(s)	1254
Bst6I	CTCTTC	5 cut(s)	1007, 1082, 1454, 1460, 1481
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	1339
BstDEI	CTNAG	6 cut(s)	915, 1119, 1152, 1194, 1224, 1269
BstF5I	GGATG	2 cut(s)	772, 982
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	5 cut(s)	136, 321, 447, 471, 550
BstMBI	GATC	5 cut(s)	133, 318, 444, 468, 547
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 86, 448, 457, 463, 721
BstSCI	CCNGG	2 cut(s)	685, 686
BstSFI	CTRYAG	1 cut(s)	1443
BstSLI	GKGCMC	1 cut(s)	687
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	4 cut(s)	393, 444, 729, 898
Bsu36I	CCTNAGG	1 cut(s)	1224
BsuRI	GGCC	7 cut(s)	5, 71, 122, 280, 302, 314, 326
BtsCI	GGATG	2 cut(s)	772, 982
BtsI	GCAGTG	2 cut(s)	601, 913
BtsIMutI	CAGTG	2 cut(s)	601, 913
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	1339
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	883
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	2 cut(s)	276, 508
Cfr13I	GGNCC	4 cut(s)	70, 121, 279, 301
Cfr9I	CCCGGG	1 cut(s)	686
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	358, 582, 1203
CspCI	CAANNNNNGTGG	2 cut(s)	1194, 1229
CviAII	CATG	1 cut(s)	884
CviQI	GTAC	3 cut(s)	358, 582, 1203
DdeI	CTNAG	6 cut(s)	915, 1119, 1152, 1194, 1224, 1269
DpnI	GATC	5 cut(s)	135, 320, 446, 470, 549
DpnII	GATC	5 cut(s)	133, 318, 444, 468, 547
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	1007, 1082, 1454, 1460, 1481
EarI	CTCTTC	5 cut(s)	1007, 1082, 1454, 1460, 1481
EciI	GGCGGA	1 cut(s)	1449
Eco130I	CCWWGG	2 cut(s)	192, 297
Eco57I	CTGAAG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	1224
Eco88I	CYCGRG	1 cut(s)	686
EcoT14I	CCWWGG	2 cut(s)	192, 297
ErhI	CCWWGG	2 cut(s)	192, 297
FaeI	CATG	1 cut(s)	887
FaiI	YATR	4 cut(s)	420, 556, 885, 1400
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	2 cut(s)	43, 601
FatI	CATG	1 cut(s)	883
FblI	GTMKAC	2 cut(s)	159, 1265
Fnu4HI	GCNGC	8 cut(s)	6, 9, 407, 458, 559, 743, 746, 912
FokI	GGATG	2 cut(s)	779, 989
Fsp4HI	GCNGC	8 cut(s)	6, 9, 407, 458, 559, 743, 746, 912
FspBI	CTAG	2 cut(s)	155, 1056
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	8 cut(s)	6, 9, 407, 458, 559, 743, 746, 912
GsaI	CCCAGC	3 cut(s)	23, 247, 825
HaeIII	GGCC	7 cut(s)	5, 71, 122, 280, 302, 314, 326
HapII	CCGG	5 cut(s)	277, 503, 509, 687, 764
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	887
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	2 cut(s)	205, 1266
HindII	GTYRAC	2 cut(s)	205, 1266
HinfI	GANTC	8 cut(s)	229, 392, 499, 731, 757, 880, 1040, 1115
HpaII	CCGG	5 cut(s)	277, 503, 509, 687, 764
Hpy166II	GTNNAC	6 cut(s)	160, 205, 360, 514, 676, 1266
Hpy188I	TCNGA	6 cut(s)	96, 118, 148, 376, 552, 756
Hpy188III	TCNNGA	8 cut(s)	169, 226, 352, 472, 487, 577, 884, 1507
Hpy8I	GTNNAC	6 cut(s)	160, 205, 360, 514, 676, 1266
Hpy99I	CGWCG	3 cut(s)	152, 170, 275
HpyCH4III	ACNGT	1 cut(s)	1254
HpyCH4V	TGCA	3 cut(s)	523, 594, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 86, 448, 457, 463, 721
HpyF3I	CTNAG	6 cut(s)	915, 1119, 1152, 1194, 1224, 1269
Hsp92II	CATG	1 cut(s)	887
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	133, 318, 444, 468, 547
LmnI	GCTCC	2 cut(s)	28, 538
Lsp1109I	GCAGC	4 cut(s)	393, 444, 729, 898
LweI	GCATC	1 cut(s)	1324
MaeI	CTAG	2 cut(s)	155, 1056
MalI	GATC	5 cut(s)	135, 320, 446, 470, 549
MboI	GATC	5 cut(s)	133, 318, 444, 468, 547
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	5 cut(s)	106, 306, 529, 691, 842
MlyI	GAGTC	6 cut(s)	223, 401, 740, 751, 1049, 1124
MmeI	TCCRAC	2 cut(s)	96, 171
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	2 cut(s)	813, 1218
MslI	CAYNNNNRTG	1 cut(s)	1359
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	5 cut(s)	277, 503, 509, 687, 764
MspR9I	CCNGG	2 cut(s)	687, 688
Mva1269I	GAATGC	1 cut(s)	91
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	6 cut(s)	77, 86, 448, 457, 463, 721
NciI	CCSGG	2 cut(s)	687, 688
NdeII	GATC	5 cut(s)	133, 318, 444, 468, 547
NlaIII	CATG	1 cut(s)	887
NlaIV	GGNNCC	2 cut(s)	507, 1342
NmeAIII	GCCGAG	3 cut(s)	352, 486, 542
PagI	TCATGA	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	1 cut(s)	1271
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	499, 880
PkrI	GCNGC	8 cut(s)	7, 10, 408, 459, 560, 744, 747, 913
PleI	GAGTC	6 cut(s)	223, 400, 739, 751, 1048, 1123
PpsI	GAGTC	6 cut(s)	223, 400, 739, 751, 1048, 1123
PsiI	TTATAA	1 cut(s)	1400
PspFI	CCCAGC	3 cut(s)	19, 243, 821
PspN4I	GGNNCC	2 cut(s)	507, 1342
PspPI	GGNCC	4 cut(s)	70, 121, 279, 301
PstNI	CAGNNNCTG	1 cut(s)	760
RsaI	GTAC	3 cut(s)	359, 583, 1204
RsaNI	GTAC	3 cut(s)	358, 582, 1203
RseI	CAYNNNNRTG	1 cut(s)	1359
SalI	GTCGAC	1 cut(s)	1264
SaqAI	TTAA	2 cut(s)	813, 1218
SatI	GCNGC	8 cut(s)	6, 9, 407, 458, 559, 743, 746, 912
Sau3AI	GATC	5 cut(s)	133, 318, 444, 468, 547
Sau96I	GGNCC	4 cut(s)	70, 121, 279, 301
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	6 cut(s)	223, 401, 740, 751, 1049, 1124
ScrFI	CCNGG	2 cut(s)	687, 688
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	1 cut(s)	1324
SfcI	CTRYAG	1 cut(s)	1443
SmaI	CCCGGG	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	1359
SmlI	CTYRAG	2 cut(s)	577, 1505
SmoI	CTYRAG	2 cut(s)	577, 1505
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	5 cut(s)	106, 306, 529, 691, 842
SsiI	CCGC	8 cut(s)	6, 9, 558, 699, 740, 746, 773, 1434
SspMI	CTAG	2 cut(s)	155, 1056
StyD4I	CCNGG	2 cut(s)	685, 686
StyI	CCWWGG	2 cut(s)	192, 297
TaaI	ACNGT	1 cut(s)	1254
TaqI	TCGA	5 cut(s)	390, 395, 620, 1085, 1265
TasI	AATT	5 cut(s)	106, 306, 529, 691, 842
TatI	WGTACW	2 cut(s)	357, 581
TauI	GCSGC	4 cut(s)	8, 11, 561, 748
TfiI	GAWTC	2 cut(s)	499, 880
Tru1I	TTAA	2 cut(s)	813, 1218
Tru9I	TTAA	2 cut(s)	813, 1218
TscAI	CASTG	2 cut(s)	601, 913
TseI	GCWGC	4 cut(s)	406, 457, 742, 911
TspDTI	ATGAA	3 cut(s)	872, 900, 1179
TspMI	CCCGGG	1 cut(s)	686
TspRI	CASTG	2 cut(s)	601, 913
XapI	RAATTY	2 cut(s)	106, 306
XmaI	CCCGGG	1 cut(s)	686
XmiI	GTMKAC	2 cut(s)	159, 1265
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	2 cut(s)	155, 1056
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.