Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Reverse (-)

66161898 .. 66167474

Gene Structure 5577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGCCGCCGCAATCACCCCAGCTCCTTCGTCCTCCACCCCAACACCCACCAAAGTCACCTCCAAGACCGCCCGAAATGCCGTGAACGCCCTTCTGAAATGGCGCAATTCCAAGTCGGAGGCCCAGATACCCGATCTCCTCTCCTCCGACGAACTACTCTACCTCGTCGTGAGCCTCAAGAAAATCCCACCCAAGGGCCGCGTCAACGCCTACAAAATCCCCCTCCCGACTCCCCTCCACTCCCAGCTCACCGAGTTCTGCCTCATCTACGACGACCGGCCCAAGTCCAAGCTCACCAAGGCCCAAATTCAGGCCAAGATCAAGGCCGACAACTTGCCCGTAGTCAAAATCTTGAAGTACACCAAGCTGAAATCAGATTACAAGGCTTTCGAGTCGAAAAGGAAGCTGCTCAACTCGTATGATGTGTTTCTTGCTGATAAGCAGATCGTGCCATTGCTGCCCAGGCTGATCGGGAAGCAGTTCTTCAAGAAGAAGAAGATTCCTGTGCCGGTGGACTTGTTGCACAAGAATTGGAAGGAGCAGATTGATCGGATATGCGGCTCGGCGTTGTTGTTCTTGAGTACTGGGACTTGTAGTGTGGTGAGGGTGGCGAGGACTTCGATGAGGGAGGAGGAGATTGTGGAGAATGTGGTTTCGGCGATTAGTGGGATCGTGGAGATTGTACCCGGGAATTGGGGCGGTGTGAGGTCGTTGCATTTGAAGCTATTGGAGTCGATTCCGCTGCCGCTTTATCAGACTCTGCCGGATGAGGCGGTGAAGGTGGAGGGGGGTGAGAAAGTTGTGGAGGAAGTTAAGGAGGCTGGGAAGGGTGAGGGTAAGGAATTGAAGAAGGAGAAGGTGGGGAGGAAGAAGGGGAGGATTCATGAAGTGAGGTATTTGGATAGCAGTGCTGGTGAGGTGGTTGATGAGGTGAAATCGGGTAAGGATAGTGTTGGGGAAGGTAAGGTTGATGTGGATGAGCAAGTGGGTGGTGGTGAGTTGAAGAAGGCAAAGAGGAAGAAGGAGAAGGTTGTTGGTGAGTCCAATGGTCAAGCTAGTGAGAATGATGGTGAGTTGAGGAAGTCGAAGACGAACAAGGAGAAGGTTGTTGGTGAGTTGAAGAGGTCAGAGGAACAGATGGAGAAGTTAGCTAAGCTGGTAGATGAAGATAGTGATTTTGATGTGGAAATTGCTGAGAAGCGTACGAAGAAGGTGGTTAATCCTAAGTTGGGTAAGGTGAAAGGTGAAGATGTTGAGAAACAGTTGAAAAAGTCGGCTAAGGCGAAAGATGTTGTTTTAAATGGGGAGAAACCATTGAAGAAGTCGGGTAAGGTGAACGATGATGCTGGCACCATTGTCAAGCATAAAAATGATAAGTTGTCTGCAAAAGACAAGAAAAAAGATGTTATAAAGAAGAAAGGAGATGAGTTGTCTGGCAAAGGCGGACAGGCTGTAGGAAAGAAGGAGAAGAGGAAGAGTGAGCCTGTGAAGTTGAAGAGTGAAGAGGCAAAGCTCAAGAAAGCCAAGAGAACACCATCATCTTATCGGAAAATTGTTCCCAACGCTCCAGAGATAGCAGAGCTGTTTGTTTCATGGACTTGGAGTGGTTCAATTGTCATACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

543

Amino Acids

59.97

Weight (kDa)

9.66

Isoelectric Point (pI)

22.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	51 - 245	4e-44	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1409
AccB1I	GGYRCC	1 cut(s)	1349
AccII	CGCG	1 cut(s)	201
AclWI	GGATC	1 cut(s)	677
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	4 cut(s)	359, 583, 684, 1204
AfiI	CCNNNNNNNGG	5 cut(s)	193, 194, 310, 693, 1229
AjnI	CCWGG	1 cut(s)	461
AlwI	GGATC	1 cut(s)	677
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	7 cut(s)	3, 120, 196, 278, 300, 312, 324
ApeKI	GCWGC	3 cut(s)	406, 457, 742
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	4 cut(s)	121, 196, 279, 301
AsuC2I	CCSGG	2 cut(s)	687, 688
AvaI	CYCGRG	1 cut(s)	686
BanI	GGYRCC	1 cut(s)	1349
BbsI	GAAGAC	1 cut(s)	1094
BbvI	GCAGC	3 cut(s)	393, 444, 729
BccI	CCATC	3 cut(s)	1061, 1132, 1543
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	4 cut(s)	530, 564, 724, 758
BciT130I	CCWGG	1 cut(s)	463
BcnI	CCSGG	2 cut(s)	687, 688
BfaI	CTAG	1 cut(s)	1056
BfmI	CTRYAG	1 cut(s)	1452
BisI	GCNGC	8 cut(s)	6, 9, 199, 407, 458, 559, 743, 746
BlpI	GCTNAGC	1 cut(s)	1152
BlsI	GCNGC	8 cut(s)	7, 10, 200, 408, 459, 560, 744, 747
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	3 cut(s)	463, 687, 688
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	4 cut(s)	121, 196, 279, 301
BmiI	GGNNCC	1 cut(s)	1351
BmrFI	CCNGG	3 cut(s)	463, 687, 688
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	1 cut(s)	1333
BmuI	ACTGGG	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	1094
BpmI	CTGGAG	1 cut(s)	1551
Bpu10I	CCTNAGC	1 cut(s)	1278
Bpu1102I	GCTNAGC	1 cut(s)	1152
BpuEI	CTTGAG	3 cut(s)	161, 598, 1499
BpuMI	CCSGG	2 cut(s)	687, 688
BsaJI	CCNNGG	4 cut(s)	192, 297, 461, 686
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 120, 150
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 194, 310, 693, 1229
Bse118I	RCCGGY	2 cut(s)	276, 508
Bse1I	ACTGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	4 cut(s)	192, 297, 461, 686
BseGI	GGATG	2 cut(s)	772, 982
BseLI	CCNNNNNNNGG	5 cut(s)	193, 194, 310, 693, 1229
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	1185
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	4 cut(s)	128, 133, 644, 647
BseXI	GCAGC	3 cut(s)	393, 444, 729
BseYI	CCCAGC	3 cut(s)	19, 243, 821
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	7 cut(s)	5, 122, 198, 280, 302, 314, 326
BshNI	GGYRCC	1 cut(s)	1349
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	4 cut(s)	277, 509, 687, 764
BsiWI	CGTACG	1 cut(s)	1202
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	5 cut(s)	193, 194, 310, 693, 1229
BsmFI	GGGAC	1 cut(s)	601
BsnI	GGCC	7 cut(s)	5, 122, 198, 280, 302, 314, 326
BsoBI	CYCGRG	1 cut(s)	686
Bsp143I	GATC	6 cut(s)	133, 318, 444, 468, 547, 669
Bsp1720I	GCTNAGC	1 cut(s)	1152
BspANI	GGCC	7 cut(s)	5, 122, 198, 280, 302, 314, 326
BspCNI	CTCAG	1 cut(s)	1186
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	1 cut(s)	1351
BspPI	GGATC	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	1349
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	276, 508
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	2 cut(s)	276, 508
BssECI	CCNNGG	4 cut(s)	192, 297, 461, 686
BssMI	GATC	6 cut(s)	133, 318, 444, 468, 547, 669
BssT1I	CCWWGG	2 cut(s)	192, 297
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	1 cut(s)	1263
Bst6I	CTCTTC	5 cut(s)	1115, 1463, 1469, 1490, 1497
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	1348
BstDEI	CTNAG	4 cut(s)	1152, 1194, 1224, 1278
BstF5I	GGATG	2 cut(s)	772, 982
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	6 cut(s)	136, 321, 447, 471, 550, 672
BstMBI	GATC	6 cut(s)	133, 318, 444, 468, 547, 669
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 86, 448, 457, 463, 721
BstNI	CCWGG	1 cut(s)	463
BstSCI	CCNGG	3 cut(s)	461, 685, 686
BstSFI	CTRYAG	1 cut(s)	1452
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	393, 444, 729
BstV2I	GAAGAC	1 cut(s)	1094
BsuRI	GGCC	7 cut(s)	5, 122, 198, 280, 302, 314, 326
BtsCI	GGATG	2 cut(s)	772, 982
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	1 cut(s)	913
Cac8I	GCNNGC	1 cut(s)	1348
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	883
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	2 cut(s)	276, 508
Cfr13I	GGNCC	4 cut(s)	121, 196, 279, 301
Cfr9I	CCCGGG	1 cut(s)	686
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	4 cut(s)	358, 582, 683, 1203
CviAII	CATG	2 cut(s)	884, 1593
CviQI	GTAC	4 cut(s)	358, 582, 683, 1203
DdeI	CTNAG	4 cut(s)	1152, 1194, 1224, 1278
DpnI	GATC	6 cut(s)	135, 320, 446, 470, 549, 671
DpnII	GATC	6 cut(s)	133, 318, 444, 468, 547, 669
DraI	TTTAAA	1 cut(s)	1299
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	1115, 1463, 1469, 1490, 1497
EarI	CTCTTC	5 cut(s)	1115, 1463, 1469, 1490, 1497
EciI	GGCGGA	1 cut(s)	1458
Eco130I	CCWWGG	2 cut(s)	192, 297
Eco88I	CYCGRG	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	461
EcoT14I	CCWWGG	2 cut(s)	192, 297
ErhI	CCWWGG	2 cut(s)	192, 297
FaeI	CATG	2 cut(s)	887, 1596
FaiI	YATR	7 cut(s)	420, 556, 885, 1365, 1409, 1594, 1619
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	2 cut(s)	883, 1592
Fnu4HI	GCNGC	8 cut(s)	6, 9, 199, 407, 458, 559, 743, 746
FokI	GGATG	2 cut(s)	779, 989
Fsp4HI	GCNGC	8 cut(s)	6, 9, 199, 407, 458, 559, 743, 746
FspBI	CTAG	1 cut(s)	1056
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	8 cut(s)	6, 9, 199, 407, 458, 559, 743, 746
GsaI	CCCAGC	3 cut(s)	23, 247, 825
GsuI	CTGGAG	1 cut(s)	1551
HaeIII	GGCC	7 cut(s)	5, 122, 198, 280, 302, 314, 326
HapII	CCGG	4 cut(s)	277, 509, 687, 764
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	887, 1596
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	8 cut(s)	229, 392, 499, 731, 736, 757, 880, 1040
HpaII	CCGG	4 cut(s)	277, 509, 687, 764
Hpy166II	GTNNAC	5 cut(s)	85, 205, 360, 514, 1336
Hpy188I	TCNGA	8 cut(s)	96, 118, 148, 376, 552, 756, 1129, 1548
Hpy8I	GTNNAC	5 cut(s)	85, 205, 360, 514, 1336
Hpy99I	CGWCG	3 cut(s)	152, 170, 275
HpyCH4III	ACNGT	1 cut(s)	1263
HpyCH4V	TGCA	3 cut(s)	523, 715, 1385
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 86, 448, 457, 463, 721
HpyF3I	CTNAG	4 cut(s)	1152, 1194, 1224, 1278
Hsp92II	CATG	2 cut(s)	887, 1596
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	6 cut(s)	133, 318, 444, 468, 547, 669
LmnI	GCTCC	3 cut(s)	28, 538, 1570
Lsp1109I	GCAGC	3 cut(s)	393, 444, 729
LweI	GCATC	1 cut(s)	1333
MaeI	CTAG	1 cut(s)	1056
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	135, 320, 446, 470, 549, 671
MboI	GATC	6 cut(s)	133, 318, 444, 468, 547, 669
MfeI	CAATTG	1 cut(s)	1611
MluCI	AATT	8 cut(s)	106, 306, 529, 691, 842, 1188, 1551, 1611
MlyI	GAGTC	5 cut(s)	223, 401, 740, 751, 1049
MmeI	TCCRAC	2 cut(s)	96, 171
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	3 cut(s)	813, 1218, 1298
MslI	CAYNNNNRTG	1 cut(s)	1368
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	4 cut(s)	277, 509, 687, 764
MspR9I	CCNGG	3 cut(s)	463, 687, 688
MunI	CAATTG	1 cut(s)	1611
MvaI	CCWGG	1 cut(s)	463
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	6 cut(s)	77, 86, 448, 457, 463, 721
NciI	CCSGG	2 cut(s)	687, 688
NdeII	GATC	6 cut(s)	133, 318, 444, 468, 547, 669
NlaIII	CATG	2 cut(s)	887, 1596
NlaIV	GGNNCC	1 cut(s)	1351
NmeAIII	GCCGAG	1 cut(s)	542
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	1 cut(s)	1280
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	499, 736, 880
Pfl23II	CGTACG	1 cut(s)	1202
PkrI	GCNGC	8 cut(s)	7, 10, 200, 408, 459, 560, 744, 747
PleI	GAGTC	5 cut(s)	223, 400, 739, 751, 1048
PpsI	GAGTC	5 cut(s)	223, 400, 739, 751, 1048
PsiI	TTATAA	1 cut(s)	1409
Psp6I	CCWGG	1 cut(s)	461
PspFI	CCCAGC	3 cut(s)	19, 243, 821
PspGI	CCWGG	1 cut(s)	461
PspLI	CGTACG	1 cut(s)	1202
PspN4I	GGNNCC	1 cut(s)	1351
PspPI	GGNCC	4 cut(s)	121, 196, 279, 301
PstNI	CAGNNNCTG	1 cut(s)	760
RsaI	GTAC	4 cut(s)	359, 583, 684, 1204
RsaNI	GTAC	4 cut(s)	358, 582, 683, 1203
RseI	CAYNNNNRTG	1 cut(s)	1368
SaqAI	TTAA	3 cut(s)	813, 1218, 1298
SatI	GCNGC	8 cut(s)	6, 9, 199, 407, 458, 559, 743, 746
Sau3AI	GATC	6 cut(s)	133, 318, 444, 468, 547, 669
Sau96I	GGNCC	4 cut(s)	121, 196, 279, 301
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	5 cut(s)	223, 401, 740, 751, 1049
ScrFI	CCNGG	3 cut(s)	463, 687, 688
SfaNI	GCATC	1 cut(s)	1333
SfcI	CTRYAG	1 cut(s)	1452
SmaI	CCCGGG	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	1368
SmlI	CTYRAG	3 cut(s)	176, 577, 1514
SmoI	CTYRAG	3 cut(s)	176, 577, 1514
Sse9I	AATT	8 cut(s)	106, 306, 529, 691, 842, 1188, 1551, 1611
SspMI	CTAG	1 cut(s)	1056
StyD4I	CCNGG	3 cut(s)	461, 685, 686
StyI	CCWWGG	2 cut(s)	192, 297
TaaI	ACNGT	1 cut(s)	1263
TaqI	TCGA	5 cut(s)	390, 395, 620, 734, 1085
TasI	AATT	8 cut(s)	106, 306, 529, 691, 842, 1188, 1551, 1611
TatI	WGTACW	2 cut(s)	357, 581
TauI	GCSGC	5 cut(s)	8, 11, 201, 561, 748
TfiI	GAWTC	3 cut(s)	499, 736, 880
Tru1I	TTAA	3 cut(s)	813, 1218, 1298
Tru9I	TTAA	3 cut(s)	813, 1218, 1298
TscAI	CASTG	1 cut(s)	913
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	406, 457, 742
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	872, 900, 1179, 1581
TspMI	CCCGGG	1 cut(s)	686
TspRI	CASTG	1 cut(s)	913
XapI	RAATTY	1 cut(s)	306
XmaI	CCCGGG	1 cut(s)	686
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	1 cut(s)	1056
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.