Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Reverse (-)

54686380 .. 54692465

Gene Structure 6086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0426100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGAAAGGCAAAGTTACGGAGCCGTCGGTGAACGACCGTTACACGCAGTGGAAGTCGCTGGTGCCTGTGCTCTACGACTGGCTCGCCAACCACAATCTCGTCTGGCCTTCTCTCTCCTGCAGATGGGGACCGCAGCTAGACCAAGCTACTTACAAGAACCGTCAGCGTCTTTATCTTTCTGAACAGACCGACGGAAGCGTTCCAAATACTCTTGTCATTGCAAACTGTGAAGTTGTCAAACCTAGGGTTGCAGCTGCAGAGCACATATCACAGTTCAATGAAGAAGCACGCTCTCCTTTTGTAAAGAAGTATAAAACTATAATACATCCTGGAGAGGTGAACAGAATCAGGGAACTCCCACAGAATAGCAAGATTGTGGCCACACACACTGACAGTCCTGATGTTCTCATTTGGGACATTGAGGCTCAACCTAATCGTCATGCTGTCCTGGGAGCTACAAATTCTCGCCCAGATCTGCTATTGACTGGACATCAAGATAATGCTGAATTTGCACTTGCTATGTGCCCCTCGGAACCCTTTGTACTCTCTGGAGGGAAGGACAAGTCAGTGATTTTGTGGAGTATTCAAGATCATATCTCGTCTTTGGCATCAGATCCTGGGTCTGCAAGGTCTCCAGGATCTGGTGGTTCAAATGCTAAACATGCCTCTAAGGTTGGTGGGAGTAATGACAAACCCACAGACAGCCCTTCTGTTGAGCCACGAGGTATCTATCAAGGGCATGAGGATACTGTTGAAGATGTACAGTTCTGCCCATCTAGTGCGCAGGAGTTCTGCAGTGTAGGCGACGATTCTTGCCTCATACTATGGGATGCTAGATCTGGCAATAGTCCAGTTGTCAAGGTTGAGAAAGCTCATGATGCTGACCTTCATTGTGTAGATTGGAATCCTCATGATGTCAATCTCATTCTTACAGGGTCTGCCGATAAGACTGTTCGTATGTTTGACCGCCGGAATCTCACTTCTGGAGGAGTTGGATCACCCATTCATAAGTTTGAGGGCCACAATGAAGCTGTTCTCTGTGTTCAGTGGTCTCCTGACAAGTCCTCTGTCTTTGGAAGTTCTGCTGAGGATGGCCTATTGAACATCTGGGATCATGAAAAGATTGGTAAGAAGCAAGAATCTGTTGGACCAAAGCTGCCAAATGCTCCTCCTGCAGGATTGTTTTTCCGACATGCTGGTCATAGGGACAAGGTTGTTGATTTTCATTGGAATACATCTGATCCCTGGACAATAGTAAGTGTTTCTGATGATTGTGGAAGTACTGGAGGAGGCGGTACACTCCAGATATGGCGAATGATTGATTTGATTTACAGGCCTGAGGAAGAGGTGCTGGCCGAGCTTGACAAGTTCAAATCTCACGTGTTGACATGCCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

466

Amino Acids

51.24

Weight (kDa)

5.73

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1C_H4-bd	PF12265	12 - 79	1.1e-19	Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_TEP1_2nd	PF25047	235 - 374	7.9e-10	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	237 - 323	9.5e-09	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	244 - 283	9.1e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	244 - 374	3e-20	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	245 - 324	9.6e-06	WDR3 second beta-propeller domain
WDR55	PF24796	245 - 374	6.9e-08	WDR55
Beta-prop_EIPR1	PF23609	247 - 321	1.1e-09	EIPR1 beta-propeller
Beta-prop_EML_2	PF23414	260 - 379	4.7e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	274 - 372	3.5e-09	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	290 - 375	1.1e-10	Prp19 WD40 domain
Beta-prop_EIPR1	PF23609	291 - 372	4.3e-06	EIPR1 beta-propeller
Beta-prop_THOC3	PF25174	292 - 380	1e-12	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	294 - 374	2e-06	WDHD1 first WD40 domain
WD40	PF00400	332 - 371	1.6e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1197
Acc16I	TGCGCA	1 cut(s)	783
AccB1I	GGYRCC	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	641
AciI	CCGC	3 cut(s)	131, 967, 1293
AclWI	GGATC	5 cut(s)	608, 646, 1003, 1119, 1235
AcoI	YGGCCR	2 cut(s)	378, 1353
AcsI	RAATTY	2 cut(s)	460, 506
AcvI	CACGTG	1 cut(s)	1381
AdeI	CACNNNGTG	1 cut(s)	48
AfaI	GTAC	4 cut(s)	543, 762, 1282, 1297
AfiI	CCNNNNNNNGG	3 cut(s)	123, 641, 1175
AflIII	ACRYGT	1 cut(s)	1380
AgsI	TTSAA	6 cut(s)	277, 587, 651, 755, 1102, 1372
AjnI	CCWGG	5 cut(s)	328, 447, 616, 634, 1244
AluBI	AGCT	8 cut(s)	136, 146, 254, 455, 872, 1031, 1156, 1360
AluI	AGCT	8 cut(s)	136, 146, 254, 455, 872, 1031, 1156, 1360
Alw21I	GWGCWC	2 cut(s)	72, 264
Alw26I	GTCTC	2 cut(s)	636, 1056
AlwI	GGATC	5 cut(s)	608, 646, 1003, 1119, 1235
AlwNI	CAGNNNCTG	3 cut(s)	617, 641, 938
AoxI	GGCC	6 cut(s)	104, 378, 1018, 1093, 1334, 1353
ApeKI	GCWGC	4 cut(s)	133, 251, 254, 1156
ApoI	RAATTY	2 cut(s)	460, 506
Asp700I	GAANNNNTTC	1 cut(s)	1032
AspA2I	CCTAGG	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	784
AspS9I	GGNCC	3 cut(s)	128, 1018, 1148
AsuHPI	GGTGA	3 cut(s)	40, 349, 990
AvaII	GGWCC	2 cut(s)	128, 1148
AvrII	CCTAGG	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	1338
BaeGI	GKGCMC	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	720
BbrPI	CACGTG	1 cut(s)	1381
Bbv12I	GWGCWC	2 cut(s)	72, 264
BbvCI	CCTCAGC	1 cut(s)	1086
BbvI	GCAGC	4 cut(s)	145, 241, 263, 1143
BccI	CCATC	3 cut(s)	117, 781, 1085
BceAI	ACGGC	1 cut(s)	7
BciT130I	CCWGG	5 cut(s)	330, 449, 618, 636, 1246
BciVI	GTATCC	1 cut(s)	739
BcoDI	GTCTC	2 cut(s)	636, 1056
BfaI	CTAG	4 cut(s)	137, 243, 777, 834
BfmI	CTRYAG	4 cut(s)	118, 255, 793, 1173
BfuI	GTATCC	1 cut(s)	739
BglII	AGATCT	2 cut(s)	472, 836
BisI	GCNGC	4 cut(s)	134, 252, 255, 1157
BlnI	CCTAGG	1 cut(s)	242
BlsI	GCNGC	4 cut(s)	135, 253, 256, 1158
BmcAI	AGTACT	1 cut(s)	1282
Bme1390I	CCNGG	5 cut(s)	330, 449, 618, 636, 1246
Bme18I	GGWCC	2 cut(s)	128, 1148
BmgT120I	GGNCC	3 cut(s)	128, 1018, 1148
BmiI	GGNNCC	4 cut(s)	21, 63, 129, 534
BmrFI	CCNGG	5 cut(s)	330, 449, 618, 636, 1246
BmsI	GCATC	3 cut(s)	617, 820, 868
BpmI	CTGGAG	6 cut(s)	351, 570, 618, 1005, 1286, 1305
Bpu10I	CCTNAGC	1 cut(s)	1086
BsaAI	YACGTR	1 cut(s)	1381
BsaBI	GATNNNNATC	2 cut(s)	903, 918
BsaI	GGTCTC	2 cut(s)	636, 1056
BsaJI	CCNNGG	5 cut(s)	242, 448, 528, 617, 1244
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 641, 1175
Bse1I	ACTGG	4 cut(s)	83, 490, 851, 1288
Bse21I	CCTNAGG	1 cut(s)	1338
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	2 cut(s)	903, 918
BseBI	CCWGG	5 cut(s)	330, 449, 618, 636, 1246
BseDI	CCNNGG	5 cut(s)	242, 448, 528, 617, 1244
BseGI	GGATG	3 cut(s)	325, 835, 1096
BseJI	GATNNNNATC	2 cut(s)	903, 918
BseLI	CCNNNNNNNGG	3 cut(s)	123, 641, 1175
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	1077, 1329
BseNI	ACTGG	4 cut(s)	83, 490, 851, 1288
BseRI	GAGGAG	3 cut(s)	1002, 1158, 1302
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	4 cut(s)	145, 241, 263, 1143
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	6 cut(s)	106, 380, 1020, 1095, 1336, 1355
BshNI	GGYRCC	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	72, 264
BsiSI	CCGG	1 cut(s)	970
BslFI	GGGAC	3 cut(s)	141, 428, 1220
BslI	CCNNNNNNNGG	3 cut(s)	123, 641, 1175
BsmAI	GTCTC	2 cut(s)	636, 1056
BsmFI	GGGAC	3 cut(s)	141, 428, 1220
BsnI	GGCC	6 cut(s)	106, 380, 1020, 1095, 1336, 1355
Bso31I	GGTCTC	2 cut(s)	636, 1056
Bsp1286I	GDGCHC	3 cut(s)	72, 264, 527
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	8 cut(s)	472, 589, 613, 638, 836, 995, 1111, 1240
BspACI	CCGC	3 cut(s)	131, 967, 1293
BspANI	GGCC	6 cut(s)	106, 380, 1020, 1095, 1336, 1355
BspCNI	CTCAG	2 cut(s)	1078, 1330
BspHI	TCATGA	3 cut(s)	874, 910, 1114
BspLI	GGNNCC	4 cut(s)	21, 63, 129, 534
BspMAI	CTGCAG	4 cut(s)	122, 259, 797, 1177
BspPI	GGATC	5 cut(s)	608, 646, 1003, 1119, 1235
BspT107I	GGYRCC	1 cut(s)	61
BspTNI	GGTCTC	2 cut(s)	636, 1056
BsrDI	GCAATG	1 cut(s)	216
BsrGI	TGTACA	1 cut(s)	760
BsrI	ACTGG	4 cut(s)	83, 490, 851, 1288
BssECI	CCNNGG	5 cut(s)	242, 448, 528, 617, 1244
BssMI	GATC	8 cut(s)	472, 589, 613, 638, 836, 995, 1111, 1240
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	5 cut(s)	330, 449, 618, 636, 1246
Bst4CI	ACNGT	8 cut(s)	38, 161, 227, 273, 395, 751, 765, 952
Bst6I	CTCTTC	1 cut(s)	1338
BstAUI	TGTACA	1 cut(s)	760
BstBAI	YACGTR	1 cut(s)	1381
BstC8I	GCNNGC	3 cut(s)	84, 289, 1353
BstDEI	CTNAG	3 cut(s)	669, 1086, 1338
BstENI	CCTNNNNNAGG	1 cut(s)	1173
BstF5I	GGATG	3 cut(s)	325, 835, 1096
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	8 cut(s)	475, 592, 616, 641, 839, 998, 1114, 1243
BstMAI	GTCTC	2 cut(s)	636, 1056
BstMBI	GATC	8 cut(s)	472, 589, 613, 638, 836, 995, 1111, 1240
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	6 cut(s)	509, 662, 801, 878, 1172, 1357
BstNI	CCWGG	5 cut(s)	330, 449, 618, 636, 1246
BstNSI	RCATGY	3 cut(s)	665, 1196, 1392
BstSCI	CCNGG	5 cut(s)	328, 447, 616, 634, 1244
BstSFI	CTRYAG	4 cut(s)	118, 255, 793, 1173
BstSLI	GKGCMC	1 cut(s)	527
BstV1I	GCAGC	4 cut(s)	145, 241, 263, 1143
BstX2I	RGATCY	4 cut(s)	472, 613, 638, 836
BstYI	RGATCY	4 cut(s)	472, 613, 638, 836
Bsu36I	CCTNAGG	1 cut(s)	1338
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	6 cut(s)	106, 380, 1020, 1095, 1336, 1355
BtsCI	GGATG	3 cut(s)	325, 835, 1096
BtsI	GCAGTG	2 cut(s)	53, 802
BtsIMutI	CAGTG	5 cut(s)	53, 387, 573, 802, 1052
Cac8I	GCNNGC	3 cut(s)	84, 289, 1353
CaiI	CAGNNNCTG	3 cut(s)	617, 641, 938
CciI	TCATGA	3 cut(s)	874, 910, 1114
CfoI	GCGC	1 cut(s)	784
Cfr13I	GGNCC	3 cut(s)	128, 1018, 1148
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	4 cut(s)	542, 761, 1281, 1296
CviAII	CATG	8 cut(s)	440, 662, 740, 875, 911, 1115, 1193, 1389
CviQI	GTAC	4 cut(s)	542, 761, 1281, 1296
DdeI	CTNAG	3 cut(s)	669, 1086, 1338
DpnI	GATC	8 cut(s)	474, 591, 615, 640, 838, 997, 1113, 1242
DpnII	GATC	8 cut(s)	472, 589, 613, 638, 836, 995, 1111, 1240
DraIII	CACNNNGTG	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	1197
DseDI	GACNNNNNNGTC	1 cut(s)	1197
EaeI	YGGCCR	2 cut(s)	378, 1353
Eam1104I	CTCTTC	1 cut(s)	1338
EarI	CTCTTC	1 cut(s)	1338
Eco130I	CCWWGG	1 cut(s)	242
Eco147I	AGGCCT	1 cut(s)	1336
Eco31I	GGTCTC	2 cut(s)	636, 1056
Eco47I	GGWCC	2 cut(s)	128, 1148
Eco72I	CACGTG	1 cut(s)	1381
Eco81I	CCTNAGG	1 cut(s)	1338
EcoNI	CCTNNNNNAGG	1 cut(s)	1173
EcoRII	CCWGG	5 cut(s)	328, 447, 616, 634, 1244
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	8 cut(s)	443, 665, 743, 878, 914, 1118, 1196, 1392
FaqI	GGGAC	3 cut(s)	141, 428, 1220
FatI	CATG	8 cut(s)	439, 661, 739, 874, 910, 1114, 1192, 1388
Fnu4HI	GCNGC	4 cut(s)	134, 252, 255, 1157
FokI	GGATG	3 cut(s)	312, 842, 1103
Fsp4HI	GCNGC	4 cut(s)	134, 252, 255, 1157
FspBI	CTAG	4 cut(s)	137, 243, 777, 834
FspI	TGCGCA	1 cut(s)	783
GlaI	GCGC	1 cut(s)	783
GluI	GCNGC	4 cut(s)	134, 252, 255, 1157
GsuI	CTGGAG	6 cut(s)	351, 570, 618, 1005, 1286, 1305
HaeIII	GGCC	6 cut(s)	106, 380, 1020, 1095, 1336, 1355
HapII	CCGG	1 cut(s)	970
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	784
Hin1II	CATG	8 cut(s)	443, 665, 743, 878, 914, 1118, 1196, 1392
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HincII	GTYRAC	1 cut(s)	1386
HindII	GTYRAC	1 cut(s)	1386
HinfI	GANTC	5 cut(s)	345, 809, 904, 973, 1139
HpaII	CCGG	1 cut(s)	970
HphI	GGTGA	3 cut(s)	40, 349, 990
Hpy166II	GTNNAC	4 cut(s)	31, 340, 1298, 1386
Hpy188I	TCNGA	6 cut(s)	181, 532, 613, 1190, 1240, 1267
Hpy8I	GTNNAC	4 cut(s)	31, 340, 1298, 1386
Hpy99I	CGWCG	3 cut(s)	28, 194, 809
HpyAV	CCTTC	4 cut(s)	117, 550, 717, 896
HpyCH4III	ACNGT	8 cut(s)	38, 161, 227, 273, 395, 751, 765, 952
HpyCH4IV	ACGT	1 cut(s)	1380
HpyCH4V	TGCA	8 cut(s)	120, 221, 251, 257, 512, 626, 795, 1175
HpyF10VI	GCNNNNNNNGC	6 cut(s)	509, 662, 801, 878, 1172, 1357
HpyF3I	CTNAG	3 cut(s)	669, 1086, 1338
HpySE526I	ACGT	1 cut(s)	1380
Hsp92II	CATG	8 cut(s)	443, 665, 743, 878, 914, 1118, 1196, 1392
HspAI	GCGC	1 cut(s)	782
Kzo9I	GATC	8 cut(s)	472, 589, 613, 638, 836, 995, 1111, 1240
LmnI	GCTCC	3 cut(s)	19, 452, 1171
Lsp1109I	GCAGC	4 cut(s)	145, 241, 263, 1143
LweI	GCATC	3 cut(s)	617, 820, 868
MaeI	CTAG	4 cut(s)	137, 243, 777, 834
MaeII	ACGT	1 cut(s)	1380
MaeIII	GTNAC	2 cut(s)	13, 38
MalI	GATC	8 cut(s)	474, 591, 615, 640, 838, 997, 1113, 1242
MboI	GATC	8 cut(s)	472, 589, 613, 638, 836, 995, 1111, 1240
MboII	GAAGA	3 cut(s)	293, 767, 1355
MflI	RGATCY	4 cut(s)	472, 613, 638, 836
MhlI	GDGCHC	3 cut(s)	72, 264, 527
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	2 cut(s)	460, 506
MluNI	TGGCCA	1 cut(s)	380
MmeI	TCCRAC	3 cut(s)	973, 1126, 1213
Mox20I	TGGCCA	1 cut(s)	380
MroXI	GAANNNNTTC	1 cut(s)	1032
MscI	TGGCCA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	970
MspR9I	CCNGG	5 cut(s)	330, 449, 618, 636, 1246
MvaI	CCWGG	5 cut(s)	330, 449, 618, 636, 1246
MwoI	GCNNNNNNNGC	6 cut(s)	509, 662, 801, 878, 1172, 1357
NdeII	GATC	8 cut(s)	472, 589, 613, 638, 836, 995, 1111, 1240
NlaIII	CATG	8 cut(s)	443, 665, 743, 878, 914, 1118, 1196, 1392
NlaIV	GGNNCC	4 cut(s)	21, 63, 129, 534
NmeAIII	GCCGAG	1 cut(s)	1381
NsbI	TGCGCA	1 cut(s)	783
NspI	RCATGY	3 cut(s)	665, 1196, 1392
PagI	TCATGA	3 cut(s)	874, 910, 1114
PceI	AGGCCT	1 cut(s)	1336
PdmI	GAANNNNTTC	1 cut(s)	1032
PfeI	GAWTC	5 cut(s)	345, 809, 904, 973, 1139
PflMI	CCANNNNNTGG	1 cut(s)	641
PfoI	TCCNGGA	2 cut(s)	328, 634
PkrI	GCNGC	4 cut(s)	135, 253, 256, 1158
PmaCI	CACGTG	1 cut(s)	1381
PmlI	CACGTG	1 cut(s)	1381
Ppu21I	YACGTR	1 cut(s)	1381
Psp6I	CCWGG	5 cut(s)	328, 447, 616, 634, 1244
PspCI	CACGTG	1 cut(s)	1381
PspGI	CCWGG	5 cut(s)	328, 447, 616, 634, 1244
PspN4I	GGNNCC	4 cut(s)	21, 63, 129, 534
PspPI	GGNCC	3 cut(s)	128, 1018, 1148
PsrI	GAACNNNNNNTAC	4 cut(s)	23, 55, 525, 557
PstI	CTGCAG	4 cut(s)	122, 259, 797, 1177
PstNI	CAGNNNCTG	3 cut(s)	617, 641, 938
PsuI	RGATCY	4 cut(s)	472, 613, 638, 836
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	4 cut(s)	543, 762, 1282, 1297
RsaNI	GTAC	4 cut(s)	542, 761, 1281, 1296
SatI	GCNGC	4 cut(s)	134, 252, 255, 1157
Sau3AI	GATC	8 cut(s)	472, 589, 613, 638, 836, 995, 1111, 1240
Sau96I	GGNCC	3 cut(s)	128, 1018, 1148
SbfI	CCTGCAGG	1 cut(s)	1177
ScaI	AGTACT	1 cut(s)	1282
ScrFI	CCNGG	5 cut(s)	330, 449, 618, 636, 1246
SdaI	CCTGCAGG	1 cut(s)	1177
SduI	GDGCHC	3 cut(s)	72, 264, 527
SfaNI	GCATC	3 cut(s)	617, 820, 868
SfcI	CTRYAG	4 cut(s)	118, 255, 793, 1173
SinI	GGWCC	2 cut(s)	128, 1148
Sse8387I	CCTGCAGG	1 cut(s)	1177
Sse9I	AATT	2 cut(s)	460, 506
SseBI	AGGCCT	1 cut(s)	1336
SsiI	CCGC	3 cut(s)	131, 967, 1293
SspMI	CTAG	4 cut(s)	137, 243, 777, 834
StuI	AGGCCT	1 cut(s)	1336
StyD4I	CCNGG	5 cut(s)	328, 447, 616, 634, 1244
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	8 cut(s)	38, 161, 227, 273, 395, 751, 765, 952
TaiI	ACGT	1 cut(s)	1383
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	460, 506
TatI	WGTACW	3 cut(s)	541, 760, 1280
TfiI	GAWTC	5 cut(s)	345, 809, 904, 973, 1139
TscAI	CASTG	5 cut(s)	53, 394, 573, 802, 1052
TseI	GCWGC	4 cut(s)	133, 251, 254, 1156
TspDTI	ATGAA	7 cut(s)	17, 294, 878, 995, 1041, 1131, 1214
TspGWI	ACGGA	2 cut(s)	32, 207
TspRI	CASTG	5 cut(s)	53, 394, 573, 802, 1052
Van91I	CCANNNNNTGG	1 cut(s)	641
VpaK11BI	GGWCC	2 cut(s)	128, 1148
XagI	CCTNNNNNAGG	1 cut(s)	1173
XapI	RAATTY	2 cut(s)	460, 506
XceI	RCATGY	3 cut(s)	665, 1196, 1392
XmaJI	CCTAGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	1032
XspI	CTAG	4 cut(s)	137, 243, 777, 834
ZrmI	AGTACT	1 cut(s)	1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.