AT1G06380

Ribosomal L1 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004127
Physical Location & Seq
Forward (+)
1944993 .. 1946303
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06380.1

Sequence Viewer

Length: 765 bp
ATGAGTACTACTACTACTACGGCTGCACTTCCGCAGCGACACCAGTCGAAGGTTGACCCGCAGAACGTTAACAGAGCCGTGAAGTCTCTGCTAAAATGGTGGGACTCCAAATCCAAGACCGAGAACTCTGAATCACTCGAGAACGACGGTTTCGTCTATCTAATCGTGACACTGAAGAGAATCCCTCAGTTGGATCGTACTAACCCCTTGATGATCCCTCTTCCTCATCCTCTCATCGATCTGGTCGCCGAAGATCCGCCGGAGCTCTGTTTGATCATCGACGACAAACACAAGAACAAAATCACAAAGGAAGCGGCTTTGAAGAAGATCGAAGCAGAGAAGATTCCAATCACCACAGTTATTAAAGTCTCCAAATTGAAATCCGATTTACGCAAATTAGAGGAGGAGAAGCGATTCGAGTTGTATTTCGCGGAGAGGAGGCTAATGCCGATGTTGCCGAAGCTGTTGGGGAAAGAGTTTGTTAAGAAGAATAAGACTCCGATTGCGATTAACTTAAGGCATGGTAGTTGGAAAGAGCAGATCGAAAAAGCTTGTGAATCAGCTTTGTTCTTCGTTGGTACAGGTACTTGCAGTGTTGTTAAAGTAGCGAAGTTGTCAATGGGAAGGAACGAGATTGCAGAGAATGTTGTAGCGGCCATGAATGGGATTGGTGATTTAGTTCCTGGTAGATGGAAGAATGTTAAATTGTTTCATCTCAAGTTACTTGAGAGCTTGGCATTGCCTGTTTATCAATCAGTTGCTTGA

Protein Analysis

254

Amino Acids

28.71

Weight (kDa)

9.48

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 43 - 244 1.2e-36 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccII CGCG 1 cut(s) 431
AciI CCGC 6 cut(s) 32, 59, 257, 314, 431, 653
AclI AACGTT 1 cut(s) 66
AclWI GGATC 3 cut(s) 201, 208, 248
AcoI YGGCCR 1 cut(s) 654
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 4 cut(s) 7, 199, 580, 586
AfiI CCNNNNNNNGG 3 cut(s) 49, 190, 663
AflII CTTAAG 1 cut(s) 514
AgsI TTSAA 2 cut(s) 322, 379
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 5 cut(s) 265, 463, 551, 563, 732
AluI AGCT 5 cut(s) 265, 463, 551, 563, 732
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 2 cut(s) 90, 373
AlwI GGATC 3 cut(s) 201, 208, 248
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 2 cut(s) 23, 34
Asp700I GAANNNNTTC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 343, 683
AvaI CYCGRG 1 cut(s) 137
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 10, 46
BccI CCATC 1 cut(s) 684
BceAI ACGGC 2 cut(s) 36, 62
BciT130I CCWGG 1 cut(s) 684
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 90, 373
BfrI CTTAAG 1 cut(s) 514
BisI GCNGC 4 cut(s) 24, 35, 315, 654
BlsI GCNGC 4 cut(s) 25, 36, 316, 655
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 684
BmeT110I CYCGRG 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 684
BoxI GACNNNNGTC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BpuEI CTTGAG 2 cut(s) 701, 746
Bsa29I ATCGAT 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 190, 663
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 737
Bse8I GATNNNNATC 1 cut(s) 347
BseBI CCWGG 1 cut(s) 684
BseCI ATCGAT 1 cut(s) 237
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 347
BseLI CCNNNNNNNGG 3 cut(s) 49, 190, 663
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 3 cut(s) 416, 419, 451
BseXI GCAGC 2 cut(s) 10, 46
BsgI GTGCAG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 3 cut(s) 49, 190, 663
BsmAI GTCTC 2 cut(s) 90, 373
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 656
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 7 cut(s) 193, 213, 238, 253, 273, 327, 540
BspACI CCGC 6 cut(s) 32, 59, 257, 314, 431, 653
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 1 cut(s) 431
BspPI GGATC 3 cut(s) 201, 208, 248
BspTI CTTAAG 1 cut(s) 514
BsrDI GCAATG 1 cut(s) 737
BsrI ACTGG 1 cut(s) 43
BssMI GATC 7 cut(s) 193, 213, 238, 253, 273, 327, 540
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 2 cut(s) 149, 358
Bst6I CTCTTC 2 cut(s) 170, 225
BstAFI CTTAAG 1 cut(s) 514
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 431
BstKTI GATC 7 cut(s) 196, 216, 241, 256, 276, 330, 543
BstMAI GTCTC 2 cut(s) 90, 373
BstMBI GATC 7 cut(s) 193, 213, 238, 253, 273, 327, 540
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 1 cut(s) 684
BstPAI GACNNNNGTC 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 682
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 10, 46
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 1 cut(s) 656
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 170, 598
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 4 cut(s) 6, 198, 579, 585
CviAII CATG 2 cut(s) 521, 658
CviQI GTAC 4 cut(s) 6, 198, 579, 585
DdeI CTNAG 1 cut(s) 186
DpnI GATC 7 cut(s) 195, 215, 240, 255, 275, 329, 542
DpnII GATC 7 cut(s) 193, 213, 238, 253, 273, 327, 540
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 2 cut(s) 170, 225
EarI CTCTTC 2 cut(s) 170, 225
EciI GGCGGA 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 682
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 2 cut(s) 524, 661
FaiI YATR 2 cut(s) 522, 659
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 520, 657
FauI CCCGC 1 cut(s) 66
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 4 cut(s) 24, 35, 315, 654
FokI GGATG 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 4 cut(s) 24, 35, 315, 654
GluI GCNGC 4 cut(s) 24, 35, 315, 654
HaeIII GGCC 1 cut(s) 656
HapII CCGG 1 cut(s) 260
Hin1II CATG 2 cut(s) 524, 661
HincII GTYRAC 2 cut(s) 55, 70
HindII GTYRAC 2 cut(s) 55, 70
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 7 cut(s) 104, 131, 180, 343, 414, 496, 557
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 1 cut(s) 260
HphI GGTGA 2 cut(s) 343, 683
Hpy166II GTNNAC 2 cut(s) 55, 70
Hpy188I TCNGA 3 cut(s) 130, 385, 501
Hpy188III TCNNGA 2 cut(s) 139, 166
Hpy8I GTNNAC 2 cut(s) 55, 70
Hpy99I CGWCG 2 cut(s) 149, 284
HpyAV CCTTC 2 cut(s) 43, 618
HpyCH4III ACNGT 2 cut(s) 149, 358
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 26, 591, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 524, 661
Ksp22I TGATCA 1 cut(s) 273
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 7 cut(s) 193, 213, 238, 253, 273, 327, 540
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 7 cut(s) 56, 227, 273, 567, 669, 696, 756
Lsp1109I GCAGC 2 cut(s) 10, 46
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 166, 720
MalI GATC 7 cut(s) 195, 215, 240, 255, 275, 329, 542
MboI GATC 7 cut(s) 193, 213, 238, 253, 273, 327, 540
MboII GAAGA 9 cut(s) 187, 212, 263, 334, 337, 352, 499, 562, 706
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 374, 395, 704
MlyI GAGTC 2 cut(s) 98, 490
MmeI TCCRAC 2 cut(s) 171, 509
MnlI CCTC 8 cut(s) 195, 228, 234, 240, 394, 397, 429, 432
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 7 cut(s) 69, 363, 483, 510, 515, 600, 702
MspCI CTTAAG 1 cut(s) 514
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 684
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 454
NdeII GATC 7 cut(s) 193, 213, 238, 253, 273, 327, 540
NlaIII CATG 2 cut(s) 524, 661
NmuCI GTSAC 1 cut(s) 166
PaeR7I CTCGAG 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 5 cut(s) 131, 180, 343, 414, 557
PkrI GCNGC 4 cut(s) 25, 36, 316, 655
PleI GAGTC 2 cut(s) 98, 490
PpsI GAGTC 2 cut(s) 98, 490
PshAI GACNNNNGTC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 267
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 4 cut(s) 7, 199, 580, 586
RsaNI GTAC 4 cut(s) 6, 198, 579, 585
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 7 cut(s) 69, 363, 483, 510, 515, 600, 702
SatI GCNGC 4 cut(s) 24, 35, 315, 654
Sau3AI GATC 7 cut(s) 193, 213, 238, 253, 273, 327, 540
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 98, 490
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 1 cut(s) 267
SetI ASST 8 cut(s) 54, 69, 267, 465, 553, 565, 586, 734
Sfr274I CTCGAG 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 137
SmlI CTYRAG 4 cut(s) 137, 514, 716, 725
SmoI CTYRAG 4 cut(s) 137, 514, 716, 725
Sse9I AATT 3 cut(s) 374, 395, 704
SsiI CCGC 6 cut(s) 32, 59, 257, 314, 431, 653
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 682
TaaI ACNGT 2 cut(s) 149, 358
TaiI ACGT 1 cut(s) 69
TaqI TCGA 7 cut(s) 47, 138, 237, 279, 330, 417, 543
TaqII GACCGA 1 cut(s) 134
TasI AATT 3 cut(s) 374, 395, 704
TatI WGTACW 1 cut(s) 5
TauI GCSGC 2 cut(s) 317, 656
TfiI GAWTC 5 cut(s) 131, 180, 343, 414, 557
Tru1I TTAA 7 cut(s) 69, 363, 483, 510, 515, 600, 702
Tru9I TTAA 7 cut(s) 69, 363, 483, 510, 515, 600, 702
TscAI CASTG 2 cut(s) 177, 598
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 23, 34
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 674, 701
TspRI CASTG 2 cut(s) 177, 598
Vha464I CTTAAG 1 cut(s) 514
XhoI CTCGAG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 413
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.