Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8481729.1

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Forward (+)

602 .. 2215

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8481729.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

atggccgccgcaatcaccccagctccttcgtcctccaccccaacacccaccaaagtgtcccccaagacggcccgaaatgccgtgaatgcccttctgaaatggcgaaattccaagtcggaggcccagaaacctgatatcctctcctccgacgaactagtctacctcgtcgtgagcctcaagaaaatcccacccaagggccgcgtcaacgcctacaaaatccccctcccgactcccctccactcccagctcaccgagttctgcctcatctacgacgaccggcccaagtccaagctcaccaaggcccaaattcaggccaagatcaaggccgacaacttgcccgtagtcaaaatcttgaagtacaccaagctgaaatcagattacaaggctttcgagtcgaaaaggaagctgctcaactcgtatgatgtgtttcttgctgataagcagatcgtgccattgctcccgaggctcatcgggaagcagttcttcaagaagaagaagattccggtgccggtggacttgttgcacaagaattggaaggagcagattgatcggatatgcggctcggcgttgttgttcttgagtactgggacctgcagcgtggtgagggtggccaggacttcgatgagggaggaggagattgtggagaatgtggtttccgcgattagtgggattgtggacattgtgcccgggaattggggcggtgtgaggtcgttgcatttgaagctattggagtcgattccgctgccgctttatcagactctgccagatgaggcggtgaaggtggaggggggtgagaaagttgtggaggaagttaaggaggctgggaagggtgagagtaaggaattgaagaaggagaaggtggggaagaagaaggggatgattcatgaagtgaggtatttggatagcagtgctggtgaggtggttgatgaggtgaaatcgggtaaggatagtgttggggaaggtaaggttgatgtggatgagcaactgggtggtggtgagttgaagaaggcgaagaggaagaaggagaaggttgttggtgagtccaatggtaaagctagtgagaatgatggtgagttgaggaagtcgaagaggaacaaggagaaggttgttggtgagtccaatggcaaagctagtgagaatgatggtgagttgaggaagtcgaagaggaacaaggagaaggttgttggtgagttgaagaggtcagaggaacagatggagaagttagctaagctggtagatgaagattgtgattttgatgtggaagttgctgagaagcgtacgaagaaggtggttaatcctaagtcgggtaaggtgaaaggtgaagatgttgagaaacagttgaaaaagtcagctaaggcgaaagatgttgctttgaatggggagaaaccattgaagaagtcgggtaaggtgaaagatgatgctggcaccattgtcaagcataaaaatgatgagttgtctgcgaatgacaagaaaaaagatgttataaagaagaaaggagatgagttgtctggcaaaggcggacaggctgtaggaaagaaggagaagaggaagagtgagcctgttaagttgaagagtgaagaggcaaagctcaagaaagccaagagaagtaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

537

Amino Acids

59.31

Weight (kDa)

9.68

Isoelectric Point (pI)

25.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1484
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	2 cut(s)	505, 1424
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	2 cut(s)	201, 659
AcoI	YGGCCR	2 cut(s)	3, 609
AcsI	RAATTY	2 cut(s)	106, 306
AfaI	GTAC	3 cut(s)	359, 583, 1279
AfiI	CCNNNNNNNGG	6 cut(s)	67, 193, 194, 310, 693, 1304
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	611
AleI	CACNNNNGTG	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	760
Ama87I	CYCGRG	2 cut(s)	460, 686
AoxI	GGCC	9 cut(s)	3, 69, 120, 196, 278, 300, 312, 324, 609
ApeKI	GCWGC	3 cut(s)	406, 594, 742
ApoI	RAATTY	2 cut(s)	106, 306
Asp700I	GAANNNNTTC	1 cut(s)	479
AspS9I	GGNCC	6 cut(s)	70, 121, 196, 279, 301, 588
AsuC2I	CCSGG	2 cut(s)	687, 688
AvaI	CYCGRG	2 cut(s)	460, 686
AvaII	GGWCC	1 cut(s)	588
BaeGI	GKGCMC	1 cut(s)	687
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	505, 1424
BbvI	GCAGC	3 cut(s)	393, 606, 729
BccI	CCATC	3 cut(s)	1061, 1136, 1207
BceAI	ACGGC	2 cut(s)	65, 84
BcgI	CGANNNNNNTGC	4 cut(s)	530, 564, 724, 758
BciT130I	CCWGG	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	687, 688
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	3 cut(s)	155, 1056, 1131
BfmI	CTRYAG	2 cut(s)	592, 1527
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
BlpI	GCTNAGC	1 cut(s)	1227
BlsI	GCNGC	8 cut(s)	7, 10, 200, 408, 560, 596, 744, 747
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	3 cut(s)	613, 687, 688
Bme18I	GGWCC	1 cut(s)	588
BmeT110I	CYCGRG	2 cut(s)	460, 686
BmgT120I	GGNCC	6 cut(s)	70, 121, 196, 279, 301, 588
BmiI	GGNNCC	3 cut(s)	507, 589, 1426
BmrFI	CCNGG	3 cut(s)	613, 687, 688
BmrI	ACTGGG	2 cut(s)	594, 995
BmsI	GCATC	1 cut(s)	1408
BmuI	ACTGGG	2 cut(s)	594, 995
Bpu10I	CCTNAGC	1 cut(s)	1353
Bpu1102I	GCTNAGC	1 cut(s)	1227
BpuEI	CTTGAG	3 cut(s)	161, 598, 1574
BpuMI	CCSGG	2 cut(s)	687, 688
BsaJI	CCNNGG	4 cut(s)	192, 297, 461, 686
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 193, 194, 310, 693, 1304
Bse118I	RCCGGY	2 cut(s)	276, 508
Bse1I	ACTGG	2 cut(s)	589, 990
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	4 cut(s)	192, 297, 461, 686
BseGI	GGATG	2 cut(s)	882, 982
BseLI	CCNNNNNNNGG	6 cut(s)	67, 193, 194, 310, 693, 1304
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	1260
BseNI	ACTGG	2 cut(s)	589, 990
BseRI	GAGGAG	3 cut(s)	133, 644, 647
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	393, 606, 729
BseYI	CCCAGC	3 cut(s)	19, 243, 821
Bsh1236I	CGCG	2 cut(s)	201, 659
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
BshNI	GGYRCC	2 cut(s)	505, 1424
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	2 cut(s)	460, 686
BsiSI	CCGG	4 cut(s)	277, 503, 509, 687
BsiWI	CGTACG	1 cut(s)	1277
BslFI	GGGAC	2 cut(s)	43, 601
BslI	CCNNNNNNNGG	6 cut(s)	67, 193, 194, 310, 693, 1304
BsmFI	GGGAC	2 cut(s)	43, 601
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
BsoBI	CYCGRG	2 cut(s)	460, 686
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	318, 444, 547
Bsp1720I	GCTNAGC	1 cut(s)	1227
BspANI	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
BspCNI	CTCAG	1 cut(s)	1261
BspFNI	CGCG	2 cut(s)	201, 659
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	3 cut(s)	507, 589, 1426
BspMAI	CTGCAG	1 cut(s)	596
BspMI	ACCTGC	1 cut(s)	599
BspT107I	GGYRCC	2 cut(s)	505, 1424
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	276, 508
BsrI	ACTGG	2 cut(s)	589, 990
BssAI	RCCGGY	2 cut(s)	276, 508
BssECI	CCNNGG	4 cut(s)	192, 297, 461, 686
BssMI	GATC	3 cut(s)	318, 444, 547
BssT1I	CCWWGG	2 cut(s)	192, 297
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	1 cut(s)	1338
Bst6I	CTCTTC	8 cut(s)	1007, 1082, 1157, 1190, 1538, 1544, 1565, 1572
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	1423
BstDEI	CTNAG	4 cut(s)	1227, 1269, 1299, 1353
BstF5I	GGATG	2 cut(s)	882, 982
BstFNI	CGCG	2 cut(s)	201, 659
BstKTI	GATC	3 cut(s)	321, 447, 550
BstMBI	GATC	3 cut(s)	318, 444, 547
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 86, 448, 463, 721
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	3 cut(s)	611, 685, 686
BstSFI	CTRYAG	2 cut(s)	592, 1527
BstSLI	GKGCMC	1 cut(s)	687
BstUI	CGCG	2 cut(s)	201, 659
BstV1I	GCAGC	3 cut(s)	393, 606, 729
BsuRI	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
BtsCI	GGATG	2 cut(s)	882, 982
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	1 cut(s)	913
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	1423
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	883
Cfr10I	RCCGGY	2 cut(s)	276, 508
Cfr13I	GGNCC	6 cut(s)	70, 121, 196, 279, 301, 588
Cfr9I	CCCGGG	1 cut(s)	686
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	358, 582, 1278
CviAII	CATG	1 cut(s)	884
CviQI	GTAC	3 cut(s)	358, 582, 1278
DdeI	CTNAG	4 cut(s)	1227, 1269, 1299, 1353
DpnI	GATC	3 cut(s)	320, 446, 549
DpnII	GATC	3 cut(s)	318, 444, 547
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	3, 609
Eam1104I	CTCTTC	8 cut(s)	1007, 1082, 1157, 1190, 1538, 1544, 1565, 1572
EarI	CTCTTC	8 cut(s)	1007, 1082, 1157, 1190, 1538, 1544, 1565, 1572
EciI	GGCGGA	1 cut(s)	1533
Eco130I	CCWWGG	2 cut(s)	192, 297
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	588
Eco88I	CYCGRG	2 cut(s)	460, 686
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	611
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	192, 297
ErhI	CCWWGG	2 cut(s)	192, 297
FaeI	CATG	1 cut(s)	887
FaiI	YATR	5 cut(s)	420, 556, 885, 1440, 1484
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	2 cut(s)	43, 601
FatI	CATG	1 cut(s)	883
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
FokI	GGATG	2 cut(s)	889, 989
Fsp4HI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
FspBI	CTAG	3 cut(s)	155, 1056, 1131
GluI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
GsaI	CCCAGC	3 cut(s)	23, 247, 825
HaeIII	GGCC	9 cut(s)	5, 71, 122, 198, 280, 302, 314, 326, 611
HapII	CCGG	4 cut(s)	277, 503, 509, 687
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	887
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	9 cut(s)	229, 392, 499, 731, 736, 757, 880, 1040, 1115
HpaII	CCGG	4 cut(s)	277, 503, 509, 687
Hpy166II	GTNNAC	5 cut(s)	160, 205, 360, 514, 676
Hpy188I	TCNGA	7 cut(s)	96, 118, 148, 376, 552, 756, 1204
Hpy8I	GTNNAC	5 cut(s)	160, 205, 360, 514, 676
Hpy99I	CGWCG	3 cut(s)	152, 170, 275
HpyCH4III	ACNGT	1 cut(s)	1338
HpyCH4V	TGCA	3 cut(s)	523, 594, 715
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 86, 448, 463, 721
HpyF3I	CTNAG	4 cut(s)	1227, 1269, 1299, 1353
Hsp92II	CATG	1 cut(s)	887
Kzo9I	GATC	3 cut(s)	318, 444, 547
LmnI	GCTCC	3 cut(s)	28, 462, 538
Lsp1109I	GCAGC	3 cut(s)	393, 606, 729
LweI	GCATC	1 cut(s)	1408
MaeI	CTAG	3 cut(s)	155, 1056, 1131
MalI	GATC	3 cut(s)	320, 446, 549
MboI	GATC	3 cut(s)	318, 444, 547
MhlI	GDGCHC	1 cut(s)	687
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	5 cut(s)	106, 306, 529, 691, 842
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	6 cut(s)	223, 401, 740, 751, 1049, 1124
MmeI	TCCRAC	2 cut(s)	96, 171
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	3 cut(s)	813, 1293, 1563
MslI	CAYNNNNRTG	2 cut(s)	53, 1443
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	4 cut(s)	277, 503, 509, 687
MspR9I	CCNGG	3 cut(s)	613, 687, 688
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	613
MvnI	CGCG	2 cut(s)	201, 659
MwoI	GCNNNNNNNGC	5 cut(s)	77, 86, 448, 463, 721
NciI	CCSGG	2 cut(s)	687, 688
NdeII	GATC	3 cut(s)	318, 444, 547
NlaIII	CATG	1 cut(s)	887
NlaIV	GGNNCC	3 cut(s)	507, 589, 1426
NmeAIII	GCCGAG	1 cut(s)	542
OliI	CACNNNNGTG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	883
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	499, 736, 880
Pfl23II	CGTACG	1 cut(s)	1277
PkrI	GCNGC	8 cut(s)	7, 10, 200, 408, 560, 596, 744, 747
PleI	GAGTC	6 cut(s)	223, 400, 739, 751, 1048, 1123
PpsI	GAGTC	6 cut(s)	223, 400, 739, 751, 1048, 1123
PpuMI	RGGWCCY	1 cut(s)	588
PsiI	TTATAA	1 cut(s)	1484
Psp5II	RGGWCCY	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	611
PspFI	CCCAGC	3 cut(s)	19, 243, 821
PspGI	CCWGG	1 cut(s)	611
PspLI	CGTACG	1 cut(s)	1277
PspN4I	GGNNCC	3 cut(s)	507, 589, 1426
PspPI	GGNCC	6 cut(s)	70, 121, 196, 279, 301, 588
PspPPI	RGGWCCY	1 cut(s)	588
PstI	CTGCAG	1 cut(s)	596
PstNI	CAGNNNCTG	1 cut(s)	760
RsaI	GTAC	3 cut(s)	359, 583, 1279
RsaNI	GTAC	3 cut(s)	358, 582, 1278
RseI	CAYNNNNRTG	2 cut(s)	53, 1443
SaqAI	TTAA	3 cut(s)	813, 1293, 1563
SatI	GCNGC	8 cut(s)	6, 9, 199, 407, 559, 595, 743, 746
Sau3AI	GATC	3 cut(s)	318, 444, 547
Sau96I	GGNCC	6 cut(s)	70, 121, 196, 279, 301, 588
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	6 cut(s)	223, 401, 740, 751, 1049, 1124
ScrFI	CCNGG	3 cut(s)	613, 687, 688
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	1 cut(s)	1408
SfcI	CTRYAG	2 cut(s)	592, 1527
SinI	GGWCC	1 cut(s)	588
SmaI	CCCGGG	1 cut(s)	688
SmiMI	CAYNNNNRTG	2 cut(s)	53, 1443
SmlI	CTYRAG	3 cut(s)	176, 577, 1589
SmoI	CTYRAG	3 cut(s)	176, 577, 1589
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	5 cut(s)	106, 306, 529, 691, 842
SspMI	CTAG	3 cut(s)	155, 1056, 1131
StyD4I	CCNGG	3 cut(s)	611, 685, 686
StyI	CCWWGG	2 cut(s)	192, 297
TaaI	ACNGT	1 cut(s)	1338
TaqI	TCGA	6 cut(s)	390, 395, 620, 734, 1085, 1160
TasI	AATT	5 cut(s)	106, 306, 529, 691, 842
TatI	WGTACW	2 cut(s)	357, 581
TauI	GCSGC	5 cut(s)	8, 11, 201, 561, 748
TfiI	GAWTC	3 cut(s)	499, 736, 880
Tru1I	TTAA	3 cut(s)	813, 1293, 1563
Tru9I	TTAA	3 cut(s)	813, 1293, 1563
TscAI	CASTG	1 cut(s)	913
TseI	GCWGC	3 cut(s)	406, 594, 742
TspDTI	ATGAA	3 cut(s)	872, 900, 1254
TspMI	CCCGGG	1 cut(s)	686
TspRI	CASTG	1 cut(s)	913
VpaK11BI	GGWCC	1 cut(s)	588
XapI	RAATTY	2 cut(s)	106, 306
XmaI	CCCGGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	3 cut(s)	155, 1056, 1131
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.