Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Reverse (-)

20588372 .. 20589737

Gene Structure 1366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCCGCGACCAGCGCAGCTCCTCCACCTTCCAAATCCACACCCACCAAACTCAACCCCAACACCGTACGAAAAGCCGTCAATGCCCTCCTCAAATGGCGAAATTCCCAGACCCAGAACCCCGAAGATCTCTTAGACTCCTCCGACGAATTCACCTACCTCGTCCTCACCCTCAAGAAAATCCCACCGAAGGGTCGCGTCAACGCCTTCAAAATCCCCCTCCCTAATCCCCTCCTCTCCGAATTCACCCAGTTCTGCTTGATCTACGACGACGGCCCCAAGTCCAAGCTCACCAAGGACCAAATCGACAAGAGGATCAAAACCCACAACTTACCCATCACCAAAACACTCAAGCTCTCCAAGCTCAAATCCGATTACAAGTCTTTTGAGGCCAAGCGGAATCTGATGGAGTCGTATGATGCGTTTCTGGCTGATAAGCAGATTGTGCCGTTGCTTCCCAGGCTTTTGGGGAAGCAGTTCTTCAAGAAGAAGAGGATGATTCCGGTGCCGGTGGACTTGCAACAGAAGAATTGGAAGGAGCAGGTGGATAGGATTATCGAGTCGGCGATGTTGTTCTTGAGTACTGGGACTTGTAGTGTTGTGAGGGTGGCCAGGACTTCGATGAGTGTTGAGCAGATTGTTGAGAATGTGGTTGCCGCCGTTGATGGGATTGTGGAGATTGTTCCGAGGAATTGGGGCGGTGTGAGGTCGTTTCATTTGAAGCTGTTGGAGTCACTTGCGCTGCCGGTGTATCAGGCTGTGCCCGATGAGACATTGTTGAAGATTGAGGGAGTTAAGGGGAGCGAGAAAGAGGTTGTGAAGAATGAGAATAAGGATTTGAAGAATGAGAAAGTGGGTAAGAAGAGGGGTAGGATTAGTGAAGTGAGGTATATGGATAGAAATGTTGGGGAGGTGCTTGATGAGGATGAGTCAAACGATGGTGTCAGTGCCAACAAGGAGAAGAGGAAGAGTGAAGAAGCAAAGCTGAAGAAAGCTAAGAGGAGTAAGAATGCAGTAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

341

Amino Acids

38.31

Weight (kDa)

9.68

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	49 - 245	3.1e-43	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	505
AccII	CGCG	2 cut(s)	8, 198
AciI	CCGC	4 cut(s)	6, 397, 657, 699
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	2 cut(s)	3, 609
AcsI	RAATTY	3 cut(s)	103, 149, 242
AcuI	CTGAAG	1 cut(s)	1007
AfaI	GTAC	2 cut(s)	69, 583
AfiI	CCNNNNNNNGG	3 cut(s)	190, 191, 666
AgsI	TTSAA	5 cut(s)	211, 484, 721, 781, 841
AjnI	CCWGG	2 cut(s)	458, 611
AluBI	AGCT	7 cut(s)	20, 289, 355, 364, 724, 985, 995
AluI	AGCT	7 cut(s)	20, 289, 355, 364, 724, 985, 995
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	4 cut(s)	3, 274, 390, 609
ApeKI	GCWGC	2 cut(s)	17, 742
ApoI	RAATTY	3 cut(s)	103, 149, 242
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	17, 742
AspS9I	GGNCC	2 cut(s)	275, 298
AsuHPI	GGTGA	5 cut(s)	145, 160, 238, 283, 331
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	765
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	29, 729
BccI	CCATC	4 cut(s)	344, 400, 659, 932
BceAI	ACGGC	4 cut(s)	62, 289, 433, 644
BciT130I	CCWGG	2 cut(s)	460, 613
BcoDI	GTCTC	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	4 cut(s)	6, 18, 657, 743
BlsI	GCNGC	4 cut(s)	7, 19, 658, 744
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	460, 613
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	275, 298
BmiI	GGNNCC	2 cut(s)	277, 507
BmrFI	CCNGG	2 cut(s)	460, 613
BmrI	ACTGGG	2 cut(s)	244, 594
BmsI	GCATC	1 cut(s)	409
BmuI	ACTGGG	2 cut(s)	244, 594
BpuEI	CTTGAG	3 cut(s)	158, 335, 598
BsaJI	CCNNGG	3 cut(s)	294, 458, 686
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 191, 666
Bse118I	RCCGGY	2 cut(s)	508, 745
Bse1I	ACTGG	2 cut(s)	250, 589
BseBI	CCWGG	2 cut(s)	460, 613
BseDI	CCNNGG	3 cut(s)	294, 458, 686
BseGI	GGATG	2 cut(s)	501, 931
BseLI	CCNNNNNNNGG	3 cut(s)	190, 191, 666
BseNI	ACTGG	2 cut(s)	250, 589
BseRI	GAGGAG	5 cut(s)	12, 80, 130, 224, 1015
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	2 cut(s)	29, 729
Bsh1236I	CGCG	2 cut(s)	8, 198
BshFI	GGCC	4 cut(s)	5, 276, 392, 611
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	3 cut(s)	503, 509, 746
BsiWI	CGTACG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	3 cut(s)	190, 191, 666
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	1015
BsnI	GGCC	4 cut(s)	5, 276, 392, 611
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp143I	GATC	3 cut(s)	127, 261, 315
BspACI	CCGC	4 cut(s)	6, 397, 657, 699
BspANI	GGCC	4 cut(s)	5, 276, 392, 611
BspFNI	CGCG	2 cut(s)	8, 198
BspLI	GGNNCC	2 cut(s)	277, 507
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	508, 745
BsrI	ACTGG	2 cut(s)	250, 589
BssAI	RCCGGY	2 cut(s)	508, 745
BssECI	CCNNGG	3 cut(s)	294, 458, 686
BssMI	GATC	3 cut(s)	127, 261, 315
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	460, 613
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	4 cut(s)	485, 857, 956, 962
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	133, 996
BstF5I	GGATG	2 cut(s)	501, 931
BstFNI	CGCG	2 cut(s)	8, 198
BstHHI	GCGC	2 cut(s)	17, 742
BstKTI	GATC	3 cut(s)	130, 264, 318
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	3 cut(s)	127, 261, 315
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
BstNI	CCWGG	2 cut(s)	460, 613
BstSCI	CCNGG	2 cut(s)	458, 611
BstSLI	GKGCMC	1 cut(s)	765
BstUI	CGCG	2 cut(s)	8, 198
BstV1I	GCAGC	2 cut(s)	29, 729
BstX2I	RGATCY	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	5, 276, 392, 611
BtgZI	GCGATG	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	501, 931
BtsIMutI	CAGTG	1 cut(s)	952
BveI	ACCTGC	1 cut(s)	532
CfoI	GCGC	2 cut(s)	17, 742
Cfr10I	RCCGGY	2 cut(s)	508, 745
Cfr13I	GGNCC	2 cut(s)	275, 298
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	68, 582
CviQI	GTAC	2 cut(s)	68, 582
DdeI	CTNAG	2 cut(s)	133, 996
DpnI	GATC	3 cut(s)	129, 263, 317
DpnII	GATC	3 cut(s)	127, 261, 315
EaeI	YGGCCR	2 cut(s)	3, 609
Eam1104I	CTCTTC	4 cut(s)	485, 857, 956, 962
EarI	CTCTTC	4 cut(s)	485, 857, 956, 962
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	1007
EcoRI	GAATTC	2 cut(s)	149, 242
EcoRII	CCWGG	2 cut(s)	458, 611
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaiI	YATR	3 cut(s)	417, 891, 893
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	601
Fnu4HI	GCNGC	4 cut(s)	6, 18, 657, 743
FokI	GGATG	2 cut(s)	508, 938
Fsp4HI	GCNGC	4 cut(s)	6, 18, 657, 743
GlaI	GCGC	2 cut(s)	16, 741
GluI	GCNGC	4 cut(s)	6, 18, 657, 743
HaeIII	GGCC	4 cut(s)	5, 276, 392, 611
HapII	CCGG	3 cut(s)	503, 509, 746
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	17, 742
Hin6I	GCGC	2 cut(s)	15, 740
HinP1I	GCGC	2 cut(s)	15, 740
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	7 cut(s)	137, 400, 410, 499, 560, 731, 929
HpaII	CCGG	3 cut(s)	503, 509, 746
HphI	GGTGA	5 cut(s)	145, 160, 238, 283, 331
Hpy166II	GTNNAC	2 cut(s)	202, 514
Hpy188I	TCNGA	5 cut(s)	145, 241, 373, 405, 687
Hpy188III	TCNNGA	3 cut(s)	175, 484, 577
Hpy8I	GTNNAC	2 cut(s)	202, 514
Hpy99I	CGWCG	3 cut(s)	149, 272, 275
HpyAV	CCTTC	4 cut(s)	39, 184, 217, 529
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	520, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
HpyF3I	CTNAG	2 cut(s)	133, 996
HspAI	GCGC	2 cut(s)	15, 740
Kzo9I	GATC	3 cut(s)	127, 261, 315
LmnI	GCTCC	3 cut(s)	25, 538, 801
Lsp1109I	GCAGC	2 cut(s)	29, 729
LweI	GCATC	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	732
MalI	GATC	3 cut(s)	129, 263, 317
MboI	GATC	3 cut(s)	127, 261, 315
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	765
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	5 cut(s)	103, 149, 242, 529, 691
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	5 cut(s)	131, 419, 569, 740, 938
MmeI	TCCRAC	2 cut(s)	168, 708
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	1 cut(s)	795
Msp20I	TGGCCA	1 cut(s)	611
MspI	CCGG	3 cut(s)	503, 509, 746
MspR9I	CCNGG	2 cut(s)	460, 613
Mva1269I	GAATGC	1 cut(s)	1015
MvaI	CCWGG	2 cut(s)	460, 613
MvnI	CGCG	2 cut(s)	8, 198
MwoI	GCNNNNNNNGC	6 cut(s)	14, 83, 361, 428, 445, 460
NdeII	GATC	3 cut(s)	127, 261, 315
NlaIV	GGNNCC	2 cut(s)	277, 507
NmuCI	GTSAC	1 cut(s)	732
PaqCI	CACCTGC	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	1015
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	400, 499
Pfl23II	CGTACG	1 cut(s)	67
PkrI	GCNGC	4 cut(s)	7, 19, 658, 744
PleI	GAGTC	5 cut(s)	131, 418, 568, 739, 937
PpsI	GAGTC	5 cut(s)	131, 418, 568, 739, 937
Psp6I	CCWGG	2 cut(s)	458, 611
PspGI	CCWGG	2 cut(s)	458, 611
PspLI	CGTACG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	277, 507
PspPI	GGNCC	2 cut(s)	275, 298
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	69, 583
RsaNI	GTAC	2 cut(s)	68, 582
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	4 cut(s)	6, 18, 657, 743
Sau3AI	GATC	3 cut(s)	127, 261, 315
Sau96I	GGNCC	2 cut(s)	275, 298
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	5 cut(s)	131, 419, 569, 740, 938
ScrFI	CCNGG	2 cut(s)	460, 613
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	3 cut(s)	173, 350, 577
SmoI	CTYRAG	3 cut(s)	173, 350, 577
Sse9I	AATT	5 cut(s)	103, 149, 242, 529, 691
SsiI	CCGC	4 cut(s)	6, 397, 657, 699
StyD4I	CCNGG	2 cut(s)	458, 611
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	306, 558, 620
TasI	AATT	5 cut(s)	103, 149, 242, 529, 691
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	2 cut(s)	8, 659
TfiI	GAWTC	2 cut(s)	400, 499
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	1 cut(s)	952
TseFI	GTSAC	1 cut(s)	732
TseI	GCWGC	2 cut(s)	17, 742
Tsp45I	GTSAC	1 cut(s)	732
TspDTI	ATGAA	1 cut(s)	704
TspRI	CASTG	1 cut(s)	952
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	3 cut(s)	103, 149, 242
XmnI	GAANNNNTTC	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.