FvH4_6g38200

Ribosomal L1 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004127
Physical Location & Seq
Reverse (-)
30227005 .. 30230400
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38200.t1

Sequence Viewer

Length: 1668 bp
ATGGCCGCCGCACTCACCCCACCTCCTTCCTCCTCCACCACCAAGGTAACCACCGAAACCGCCCGAAACGCCGTGCACGCCCTTCTGAAATGGCGAGCCACCAAGTCGGAGTCCCAAAAACCCGATCTCCTGGAGTCCGACGAGCTCCTCTACCTGGTCGTGACCCTCAAGAAAATCCCACCCAAGGGCCGCGTGAACGCCTACAAGGTCCCACTCCCGACTCCCCTCCACTCCCCCCTCACCGAGTTCTGCCTCATCTACGACGACCGCCCCAAGTCCAAGCTCACCAAGCCCCAAATCCAGGCCAAGATCAAGGCCGAGAATCTCCCCGTGGTCAAGATATTGAAGTATACCAAGCTGAAATCGGATTACAAGGCTTTCGAGTCGAAAAGGAAGCTTATGAACTCGTATGATATGTTTCTGGCGGACAAGCAGATCGTGCCGCTGCTGCCGCGCCTGCTGGGGAAGCATTTCTTCAAGAAGAAGAGGATTCCGGTGCCGGTGGACTTGCTCAAGAAGAATTGGAAGGAGCAGATTGAGAGGATTTGCGGCTCGGCGATGTTGTTTTTGAGTACCGGGACTTGTTGTGTGGTGAGGGTGGCGAGGACTTCGATGAGTGAGGAGGAGATTGTGGAGAATGCGGTTGCGGCGATACAAGGGGTTGTGGAGATTGTGCCGGGGAATTGGGGCGGGGTGAGGTCTTTGCATTTGAAGCTGTTGGAGTCGATTGCGCTGCCGGTGTATCAGACTGTGCCGGATGAGGCGGTGAAGGTTGAGGGGAGTGAGAAGGCTGTGGGGGAAGTGAAGGAGGTTGGGAAGGCGGAGAGTAAGGAACTGAAGAAGGAGAAGGTGGGGAAGAAGAAGGGGATGATTCATGAAGTGAGGTATTTGGATAGCAATGCTGGCGAGGTGGTTGTTGAGGAGAAATCAGGGAAGGATGGTGTTGGGGAAGGCAAGGTTAATGGGAAGAGGAAGAAGGAGAAGGTTGTGGACGAGTCTAATGGTAAAGCTAGTGAGAATGATGGTGAGGTGAGAAAGTCAAAGAGGATCAAGGAGAAGGATGTCGGTGAGTCTAAGAGGCCCAAGGAACAGAAGGACAAGAAAGCTAAGCTGGTACATGAAGACTTGGAAATTTCTGAGAAGCCTACGAGGAAGGTGGTTAATCCTAAGTCGGGCAAGGTGAAAGGTGAAGATGTTGAGAAACAGTTGAAAAAGTCGGTTAAGGCGAAAGATGACGTTGCATCGGATGTGGAGAAACCATTGAAGAAGTCAGTTAAGGCGAAAGATGACATTGCATCGAATGTGGAGAAACCATTGAAGAAGTCAGTCAAGGTGAAAGATGACGTTGCATCGAATGTGGAGAAACCATTGAAGAAGTCAGTTAAGGTTAAGGATGATGCTGTTGTCGTTGGGAAGCATAAGAATGATGTGTTGTCTGCGAAAGACAAGAAAAAAGATGTTTCAAAGAAGAAAGGAGACGAGCTGTCTGGCAAAGGAGGAGAGGCTGTTGGAAAGAAGGAGAAGAGGAAGAGTGAGCCTGTGAAGTTGAAGAGTGAAGAAGCAAAGCCCAAGACAGCCAAGAGAAGTAAGAAAGGAGCCGAGCCACAGGTGGTGGATGCTCTTTGCAATGAGATTCAATATATCAAAGTAAGTATGGCTGTCCATTGA

Protein Analysis

556

Amino Acids

61.45

Weight (kDa)

9.68

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 46 - 242 2.2e-46 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AccI GTMKAC 1 cut(s) 350
AccII CGCG 2 cut(s) 192, 454
AclWI GGATC 1 cut(s) 1055
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 1131
AcuI CTGAAG 1 cut(s) 857
AfaI GTAC 2 cut(s) 574, 1116
AfiI CCNNNNNNNGG 5 cut(s) 154, 184, 185, 301, 1172
AhdI GACNNNNNGTC 1 cut(s) 1483
AjnI CCWGG 3 cut(s) 129, 153, 300
AluBI AGCT 9 cut(s) 145, 283, 358, 397, 715, 1010, 1106, 1111, 1483
AluI AGCT 9 cut(s) 145, 283, 358, 397, 715, 1010, 1106, 1111, 1483
Alw21I GWGCWC 2 cut(s) 78, 147
Alw26I GTCTC 1 cut(s) 1470
Alw44I GTGCAC 1 cut(s) 74
AlwI GGATC 1 cut(s) 1055
AoxI GGCC 5 cut(s) 3, 187, 303, 315, 1079
ApaLI GTGCAC 1 cut(s) 74
ApeKI GCWGC 3 cut(s) 445, 448, 733
ApoI RAATTY 1 cut(s) 1131
Asp700I GAANNNNTTC 1 cut(s) 470
AspLEI GCGC 2 cut(s) 456, 733
AspS9I GGNCC 3 cut(s) 187, 208, 1080
AsuC2I CCSGG 2 cut(s) 577, 678
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 1128
Bbv12I GWGCWC 2 cut(s) 78, 147
BbvI GCAGC 3 cut(s) 432, 435, 720
BccI CCATC 2 cut(s) 932, 1016
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 715, 749
BciT130I CCWGG 3 cut(s) 131, 155, 302
BcnI CCSGG 2 cut(s) 577, 678
BcoDI GTCTC 1 cut(s) 1470
BfaI CTAG 1 cut(s) 1011
BlpI GCTNAGC 1 cut(s) 1107
Bme1390I CCNGG 5 cut(s) 131, 155, 302, 577, 678
Bme18I GGWCC 1 cut(s) 208
BmeRI GACNNNNNGTC 1 cut(s) 1483
BmgT120I GGNCC 3 cut(s) 187, 208, 1080
BmiI GGNNCC 3 cut(s) 210, 498, 1597
BmrFI CCNGG 5 cut(s) 131, 155, 302, 577, 678
BmsI GCATC 5 cut(s) 1250, 1304, 1358, 1387, 1606
BpiI GAAGAC 1 cut(s) 1128
BpmI CTGGAG 1 cut(s) 152
Bpu1102I GCTNAGC 1 cut(s) 1107
BpuEI CTTGAG 2 cut(s) 152, 497
BpuMI CCSGG 2 cut(s) 577, 678
BsaJI CCNNGG 5 cut(s) 42, 183, 330, 677, 1083
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 6 cut(s) 7, 37, 111, 141, 1491, 1521
Bsc4I CCNNNNNNNGG 5 cut(s) 154, 184, 185, 301, 1172
Bse118I RCCGGY 2 cut(s) 499, 736
Bse3DI GCAATG 3 cut(s) 904, 1290, 1633
BseBI CCWGG 3 cut(s) 131, 155, 302
BseDI CCNNGG 5 cut(s) 42, 183, 330, 677, 1083
BseGI GGATG 7 cut(s) 763, 873, 943, 1066, 1252, 1399, 1621
BseLI CCNNNNNNNGG 5 cut(s) 154, 184, 185, 301, 1172
BseMI GCAATG 3 cut(s) 904, 1290, 1633
BseMII CTCAG 1 cut(s) 1128
BseRI GAGGAG 6 cut(s) 22, 137, 635, 638, 935, 1512
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 3 cut(s) 432, 435, 720
BseYI CCCAGC 1 cut(s) 460
Bsh1236I CGCG 2 cut(s) 192, 454
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 5 cut(s) 5, 189, 305, 317, 1081
BshNI GGYRCC 1 cut(s) 496
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 78, 147
BsiSI CCGG 6 cut(s) 494, 500, 576, 677, 737, 755
BslFI GGGAC 3 cut(s) 97, 194, 592
BslI CCNNNNNNNGG 5 cut(s) 154, 184, 185, 301, 1172
BsmAI GTCTC 1 cut(s) 1470
BsmBI CGTCTC 1 cut(s) 1470
BsmFI GGGAC 3 cut(s) 97, 194, 592
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 5 cut(s) 5, 189, 305, 317, 1081
Bsp1286I GDGCHC 2 cut(s) 78, 147
Bsp143I GATC 4 cut(s) 124, 309, 435, 1047
Bsp1720I GCTNAGC 1 cut(s) 1107
BspANI GGCC 5 cut(s) 5, 189, 305, 317, 1081
BspCNI CTCAG 1 cut(s) 1129
BspFNI CGCG 2 cut(s) 192, 454
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 210, 498, 1597
BspPI GGATC 1 cut(s) 1055
BspT107I GGYRCC 1 cut(s) 496
BsrDI GCAATG 3 cut(s) 904, 1290, 1633
BsrFI RCCGGY 2 cut(s) 499, 736
BssAI RCCGGY 2 cut(s) 499, 736
BssECI CCNNGG 5 cut(s) 42, 183, 330, 677, 1083
BssMI GATC 4 cut(s) 124, 309, 435, 1047
BssNAI GTATAC 1 cut(s) 351
BssT1I CCWWGG 3 cut(s) 42, 183, 1083
Bst1107I GTATAC 1 cut(s) 351
Bst2UI CCWGG 3 cut(s) 131, 155, 302
Bst4CI ACNGT 2 cut(s) 751, 1206
Bst6I CTCTTC 5 cut(s) 479, 962, 1517, 1523, 1544
BstAPI GCANNNNNTGC 1 cut(s) 439
BstC8I GCNNGC 4 cut(s) 78, 96, 458, 904
BstDEI CTNAG 4 cut(s) 1074, 1107, 1137, 1167
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 7 cut(s) 763, 873, 943, 1066, 1252, 1399, 1621
BstFNI CGCG 2 cut(s) 192, 454
BstHHI GCGC 2 cut(s) 456, 733
BstKTI GATC 4 cut(s) 127, 312, 438, 1050
BstMAI GTCTC 1 cut(s) 1470
BstMBI GATC 4 cut(s) 124, 309, 435, 1047
BstMCI CGRYCG 1 cut(s) 268
BstNI CCWGG 3 cut(s) 131, 155, 302
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 5 cut(s) 129, 153, 300, 575, 676
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 2 cut(s) 192, 454
BstV1I GCAGC 3 cut(s) 432, 435, 720
BstV2I GAAGAC 1 cut(s) 1128
BstZ17I GTATAC 1 cut(s) 351
BsuRI GGCC 5 cut(s) 5, 189, 305, 317, 1081
BtgI CCRYGG 1 cut(s) 330
BtgZI GCGATG 1 cut(s) 572
BtsCI GGATG 7 cut(s) 763, 873, 943, 1066, 1252, 1399, 1621
Cac8I GCNNGC 4 cut(s) 78, 96, 458, 904
CciI TCATGA 1 cut(s) 874
CfoI GCGC 2 cut(s) 456, 733
Cfr10I RCCGGY 2 cut(s) 499, 736
Cfr13I GGNCC 3 cut(s) 187, 208, 1080
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 2 cut(s) 573, 1115
CviAII CATG 2 cut(s) 875, 1118
CviQI GTAC 2 cut(s) 573, 1115
DdeI CTNAG 4 cut(s) 1074, 1107, 1137, 1167
DpnI GATC 4 cut(s) 126, 311, 437, 1049
DpnII GATC 4 cut(s) 124, 309, 435, 1047
DriI GACNNNNNGTC 1 cut(s) 1483
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 479, 962, 1517, 1523, 1544
Eam1105I GACNNNNNGTC 1 cut(s) 1483
EarI CTCTTC 5 cut(s) 479, 962, 1517, 1523, 1544
EciI GGCGGA 2 cut(s) 440, 836
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 3 cut(s) 42, 183, 1083
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 857
Eco91I GGTNACC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 46
EcoRII CCWGG 3 cut(s) 129, 153, 300
EcoT14I CCWWGG 3 cut(s) 42, 183, 1083
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 3 cut(s) 42, 183, 1083
Esp3I CGTCTC 1 cut(s) 1470
FaeI CATG 2 cut(s) 878, 1121
FaiI YATR 9 cut(s) 351, 401, 411, 416, 876, 1119, 1419, 1641, 1655
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 3 cut(s) 97, 194, 592
FatI CATG 2 cut(s) 874, 1117
FauI CCCGC 1 cut(s) 683
FblI GTMKAC 1 cut(s) 350
FokI GGATG 7 cut(s) 770, 880, 950, 1073, 1259, 1406, 1628
FriOI GRGCYC 1 cut(s) 147
FspBI CTAG 1 cut(s) 1011
GlaI GCGC 2 cut(s) 455, 732
GsaI CCCAGC 1 cut(s) 464
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 5 cut(s) 5, 189, 305, 317, 1081
HapII CCGG 6 cut(s) 494, 500, 576, 677, 737, 755
HhaI GCGC 2 cut(s) 456, 733
Hin1II CATG 2 cut(s) 878, 1121
Hin6I GCGC 2 cut(s) 454, 731
HinP1I GCGC 2 cut(s) 454, 731
HindIII AAGCTT 1 cut(s) 395
HpaII CCGG 6 cut(s) 494, 500, 576, 677, 737, 755
Hpy166II GTNNAC 5 cut(s) 76, 196, 351, 505, 991
Hpy188I TCNGA 7 cut(s) 87, 109, 139, 367, 747, 1138, 1246
Hpy188III TCNNGA 7 cut(s) 160, 169, 217, 337, 478, 514, 875
Hpy8I GTNNAC 5 cut(s) 76, 196, 351, 505, 991
Hpy99I CGWCG 2 cut(s) 143, 266
HpyCH4III ACNGT 2 cut(s) 751, 1206
HpyCH4IV ACGT 2 cut(s) 1236, 1344
HpyCH4V TGCA 6 cut(s) 76, 706, 1241, 1295, 1349, 1626
HpyF3I CTNAG 4 cut(s) 1074, 1107, 1137, 1167
HpySE526I ACGT 2 cut(s) 1236, 1344
Hsp92II CATG 2 cut(s) 878, 1121
HspAI GCGC 2 cut(s) 454, 731
Kzo9I GATC 4 cut(s) 124, 309, 435, 1047
LmnI GCTCC 3 cut(s) 150, 529, 1595
Lsp1109I GCAGC 3 cut(s) 432, 435, 720
LweI GCATC 5 cut(s) 1250, 1304, 1358, 1387, 1606
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 1 cut(s) 1011
MaeII ACGT 2 cut(s) 1236, 1344
MaeIII GTNAC 2 cut(s) 46, 160
MalI GATC 4 cut(s) 126, 311, 437, 1049
MboI GATC 4 cut(s) 124, 309, 435, 1047
MhlI GDGCHC 2 cut(s) 78, 147
MluCI AATT 3 cut(s) 520, 682, 1131
MlyI GAGTC 7 cut(s) 119, 143, 214, 392, 731, 1004, 1079
MmeI TCCRAC 4 cut(s) 87, 162, 699, 1489
MroXI GAANNNNTTC 1 cut(s) 470
MseI TTAA 6 cut(s) 960, 1161, 1221, 1275, 1383, 1389
MslI CAYNNNNRTG 1 cut(s) 1422
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 6 cut(s) 494, 500, 576, 677, 737, 755
MspR9I CCNGG 5 cut(s) 131, 155, 302, 577, 678
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 3 cut(s) 131, 155, 302
MvnI CGCG 2 cut(s) 192, 454
NciI CCSGG 2 cut(s) 577, 678
NdeII GATC 4 cut(s) 124, 309, 435, 1047
NlaIII CATG 2 cut(s) 878, 1121
NlaIV GGNNCC 3 cut(s) 210, 498, 1597
NmeAIII GCCGAG 3 cut(s) 343, 533, 1624
NmuCI GTSAC 1 cut(s) 160
PagI TCATGA 1 cut(s) 874
PcsI WCGNNNNNNNCGW 1 cut(s) 1223
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 4 cut(s) 322, 490, 871, 1633
PfoI TCCNGGA 1 cut(s) 129
PleI GAGTC 7 cut(s) 118, 142, 214, 391, 730, 1003, 1078
PpsI GAGTC 7 cut(s) 118, 142, 214, 391, 730, 1003, 1078
PpuMI RGGWCCY 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 3 cut(s) 129, 153, 300
PspEI GGTNACC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 460
PspGI CCWGG 3 cut(s) 129, 153, 300
PspN4I GGNNCC 3 cut(s) 210, 498, 1597
PspPI GGNCC 3 cut(s) 187, 208, 1080
PspPPI RGGWCCY 1 cut(s) 208
RsaI GTAC 2 cut(s) 574, 1116
RsaNI GTAC 2 cut(s) 573, 1115
RseI CAYNNNNRTG 1 cut(s) 1422
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 6 cut(s) 960, 1161, 1221, 1275, 1383, 1389
Sau3AI GATC 4 cut(s) 124, 309, 435, 1047
Sau96I GGNCC 3 cut(s) 187, 208, 1080
SchI GAGTC 7 cut(s) 119, 143, 214, 392, 731, 1004, 1079
ScrFI CCNGG 5 cut(s) 131, 155, 302, 577, 678
SduI GDGCHC 2 cut(s) 78, 147
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 5 cut(s) 1250, 1304, 1358, 1387, 1606
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 1422
SmlI CTYRAG 2 cut(s) 167, 512
SmoI CTYRAG 2 cut(s) 167, 512
Sse9I AATT 3 cut(s) 520, 682, 1131
SspMI CTAG 1 cut(s) 1011
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 5 cut(s) 129, 153, 300, 575, 676
StyI CCWWGG 3 cut(s) 42, 183, 1083
TaaI ACNGT 2 cut(s) 751, 1206
TaiI ACGT 2 cut(s) 1239, 1347
TaqI TCGA 6 cut(s) 381, 386, 611, 725, 1298, 1352
TasI AATT 3 cut(s) 520, 682, 1131
TauI GCSGC 7 cut(s) 8, 11, 192, 445, 454, 552, 650
TfiI GAWTC 4 cut(s) 322, 490, 871, 1633
Tru1I TTAA 6 cut(s) 960, 1161, 1221, 1275, 1383, 1389
Tru9I TTAA 6 cut(s) 960, 1161, 1221, 1275, 1383, 1389
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 445, 448, 733
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 4 cut(s) 416, 863, 891, 1134
VneI GTGCAC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 1131
XmiI GTMKAC 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.