Rh4BG229300

Ribosomal L1 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004127
Physical Location & Seq
Forward (+)
39373951 .. 39375452
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG229300.1

Sequence Viewer

Length: 1020 bp
ATGGCCGCGACCACCGCAGCTCCTCCACCTTCCAAATCCACACCCACCAAACTCAACCCCAAGACCGTGCGAAAAGCCGTCAATGCCCTCCTCAAATGGCGAAATTCCCAGACCCAGAACCCCGACGATCTCTTAGACTCCTCCGACGAATTCACCTACCTCGTCCTCACCCTCAAGAAAATCCCACCAAAGGGTCGCGTCAACGCCTTCAAAATCCCTCTCCCTAATCCCCTCCTCTCCGAATTCACCCAGTTCTGCCTGATCTACGACGACCGCCCCAAGTCCAAGCTCACCAAGGACCAAATCGACAAGAGGAAAACCCACGACTTACCCATCACCAAAACACTCAAGCTCTCCAAGCTCAAATCCGATTACAAGTCTTTTGAGGCCAAGCGGAAGCTGATGGAGTCGTACGATGCGTTTCTGGCTGATAAGCAGATTGTGCCGTTGCTTCCCAGGCTTTTGGGGAAGCAGTTTTTCAAGAAGAAGAGGATGATTCCGGTGCCGGTGGACTTGCAACAGAAGAACTGGAAGGAGCAGGTGGATAGGGTTATCGAGTCGGCCATGTTGTTCTTGAGTACTGGGACTTGTAGTGTTGTGAGGGTGGCCAGGACTTCGATGAGTGTTGAGCAGATTGTTGAGAATGTGGTTGCCGCGGTTGATGGGATTGTGGAGACTGTTCCGAGGAATTGGGGCGGTGTGAGGTCGTTTCATTTGAAGCTGTTGGAGTCACTTGCGCTGCCGGTGTATCAGGCTGTGCCGGATGAGACATTGTTGAAGATTGAGGGAGTTAAGGGGAGCGAGAAAGAGGTTGTGAAGAATGAGAACAAGGATTTGAAGAATGAGAAAGTGGGTAAGAAGAAGGGTAGGATTAGTGAAGTGAGGTATATGGATAGAAATGTTGGGGAGGTGCTTGATGAGGATGAGTTAAATGATGGTGTCATTGTTGACAAGGAGAAGAGGAAGACTAAAGAAGCAAAGCTGAAGAAAGCTAAGAGGAGTAAGAATGCAGCTGAGTGA

Protein Analysis

339

Amino Acids

38.41

Weight (kDa)

9.71

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 49 - 244 9.9e-44 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
Acc36I ACCTGC 1 cut(s) 529
AccB1I GGYRCC 1 cut(s) 502
AccII CGCG 3 cut(s) 8, 198, 656
AciI CCGC 7 cut(s) 6, 15, 274, 394, 654, 656, 696
AcoI YGGCCR 3 cut(s) 3, 561, 606
AcsI RAATTY 3 cut(s) 103, 149, 242
AcuI CTGAAG 1 cut(s) 1004
AfaI GTAC 2 cut(s) 413, 580
AfiI CCNNNNNNNGG 2 cut(s) 190, 191
AgsI TTSAA 5 cut(s) 211, 481, 718, 778, 838
AjnI CCWGG 2 cut(s) 455, 608
AluBI AGCT 9 cut(s) 20, 289, 352, 361, 400, 721, 982, 992, 1013
AluI AGCT 9 cut(s) 20, 289, 352, 361, 400, 721, 982, 992, 1013
Alw26I GTCTC 2 cut(s) 668, 761
AoxI GGCC 4 cut(s) 3, 387, 561, 606
ApeKI GCWGC 3 cut(s) 17, 739, 1010
ApoI RAATTY 3 cut(s) 103, 149, 242
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 5 cut(s) 145, 160, 238, 283, 328
AvaII GGWCC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 608
BanI GGYRCC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 971
BbvI GCAGC 2 cut(s) 29, 726
BccI CCATC 4 cut(s) 341, 397, 656, 929
BceAI ACGGC 2 cut(s) 62, 430
BciT130I CCWGG 2 cut(s) 457, 610
BcoDI GTCTC 2 cut(s) 668, 761
BfuAI ACCTGC 1 cut(s) 529
BisI GCNGC 5 cut(s) 6, 18, 654, 740, 1011
BlsI GCNGC 5 cut(s) 7, 19, 655, 741, 1012
BmcAI AGTACT 1 cut(s) 580
Bme1390I CCNGG 2 cut(s) 457, 610
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 2 cut(s) 457, 610
BmrI ACTGGG 2 cut(s) 244, 591
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 2 cut(s) 244, 591
BpiI GAAGAC 1 cut(s) 971
BpuEI CTTGAG 3 cut(s) 158, 332, 595
BsaJI CCNNGG 4 cut(s) 294, 455, 654, 683
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 191
Bse118I RCCGGY 2 cut(s) 505, 742
Bse1I ACTGG 3 cut(s) 250, 533, 586
BseBI CCWGG 2 cut(s) 457, 610
BseDI CCNNGG 4 cut(s) 294, 455, 654, 683
BseGI GGATG 3 cut(s) 498, 769, 928
BseLI CCNNNNNNNGG 2 cut(s) 190, 191
BseMII CTCAG 1 cut(s) 1005
BseNI ACTGG 3 cut(s) 250, 533, 586
BseRI GAGGAG 5 cut(s) 12, 80, 130, 224, 1012
BseXI GCAGC 2 cut(s) 29, 726
Bsh1236I CGCG 3 cut(s) 8, 198, 656
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 4 cut(s) 5, 389, 563, 608
BshNI GGYRCC 1 cut(s) 502
BsiEI CGRYCG 1 cut(s) 274
BsiSI CCGG 4 cut(s) 500, 506, 743, 761
BsiWI CGTACG 1 cut(s) 411
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 2 cut(s) 190, 191
BsmAI GTCTC 2 cut(s) 668, 761
BsmFI GGGAC 1 cut(s) 598
BsmI GAATGC 1 cut(s) 1012
BsnI GGCC 4 cut(s) 5, 389, 563, 608
Bsp143I GATC 2 cut(s) 127, 261
BspACI CCGC 7 cut(s) 6, 15, 274, 394, 654, 656, 696
BspANI GGCC 4 cut(s) 5, 389, 563, 608
BspCNI CTCAG 1 cut(s) 1006
BspFNI CGCG 3 cut(s) 8, 198, 656
BspLI GGNNCC 1 cut(s) 504
BspMI ACCTGC 1 cut(s) 529
BspT107I GGYRCC 1 cut(s) 502
BsrFI RCCGGY 2 cut(s) 505, 742
BsrI ACTGG 3 cut(s) 250, 533, 586
BssAI RCCGGY 2 cut(s) 505, 742
BssECI CCNNGG 4 cut(s) 294, 455, 654, 683
BssMI GATC 2 cut(s) 127, 261
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 457, 610
Bst4CI ACNGT 2 cut(s) 67, 679
Bst6I CTCTTC 2 cut(s) 482, 953
BstAPI GCANNNNNTGC 1 cut(s) 442
BstDEI CTNAG 3 cut(s) 133, 993, 1014
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 3 cut(s) 498, 769, 928
BstFNI CGCG 3 cut(s) 8, 198, 656
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 2 cut(s) 130, 264
BstMAI GTCTC 2 cut(s) 668, 761
BstMBI GATC 2 cut(s) 127, 261
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 6 cut(s) 14, 83, 358, 425, 442, 457
BstNI CCWGG 2 cut(s) 457, 610
BstSCI CCNGG 2 cut(s) 455, 608
BstUI CGCG 3 cut(s) 8, 198, 656
BstV1I GCAGC 2 cut(s) 29, 726
BstV2I GAAGAC 1 cut(s) 971
BstXI CCANNNNNNTGG 1 cut(s) 463
BsuRI GGCC 4 cut(s) 5, 389, 563, 608
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 3 cut(s) 498, 769, 928
BveI ACCTGC 1 cut(s) 529
CfoI GCGC 1 cut(s) 739
Cfr10I RCCGGY 2 cut(s) 505, 742
Cfr13I GGNCC 1 cut(s) 298
Cfr42I CCGCGG 1 cut(s) 657
CseI GACGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 412, 579
CviAII CATG 1 cut(s) 565
CviQI GTAC 2 cut(s) 412, 579
DdeI CTNAG 3 cut(s) 133, 993, 1014
DpnI GATC 2 cut(s) 129, 263
DpnII GATC 2 cut(s) 127, 261
EaeI YGGCCR 3 cut(s) 3, 561, 606
Eam1104I CTCTTC 2 cut(s) 482, 953
EarI CTCTTC 2 cut(s) 482, 953
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 1004
EcoRI GAATTC 2 cut(s) 149, 242
EcoRII CCWGG 2 cut(s) 455, 608
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 568
FaiI YATR 3 cut(s) 566, 888, 890
FaqI GGGAC 1 cut(s) 598
FatI CATG 1 cut(s) 564
Fnu4HI GCNGC 5 cut(s) 6, 18, 654, 740, 1011
FokI GGATG 3 cut(s) 505, 776, 935
Fsp4HI GCNGC 5 cut(s) 6, 18, 654, 740, 1011
GlaI GCGC 1 cut(s) 738
GluI GCNGC 5 cut(s) 6, 18, 654, 740, 1011
HaeIII GGCC 4 cut(s) 5, 389, 563, 608
HapII CCGG 4 cut(s) 500, 506, 743, 761
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 739
Hin1II CATG 1 cut(s) 568
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HincII GTYRAC 2 cut(s) 202, 949
HindII GTYRAC 2 cut(s) 202, 949
HinfI GANTC 5 cut(s) 137, 407, 496, 557, 728
HpaII CCGG 4 cut(s) 500, 506, 743, 761
HphI GGTGA 5 cut(s) 145, 160, 238, 283, 328
Hpy166II GTNNAC 3 cut(s) 202, 511, 949
Hpy188I TCNGA 4 cut(s) 145, 241, 370, 684
Hpy188III TCNNGA 3 cut(s) 175, 481, 574
Hpy8I GTNNAC 3 cut(s) 202, 511, 949
Hpy99I CGWCG 3 cut(s) 128, 149, 272
HpyAV CCTTC 4 cut(s) 39, 217, 526, 856
HpyCH4III ACNGT 2 cut(s) 67, 679
HpyCH4V TGCA 2 cut(s) 517, 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 83, 358, 425, 442, 457
HpyF3I CTNAG 3 cut(s) 133, 993, 1014
Hsp92II CATG 1 cut(s) 568
HspAI GCGC 1 cut(s) 737
KspI CCGCGG 1 cut(s) 657
Kzo9I GATC 2 cut(s) 127, 261
LmnI GCTCC 3 cut(s) 25, 535, 798
Lsp1109I GCAGC 2 cut(s) 29, 726
LweI GCATC 1 cut(s) 406
MaeIII GTNAC 1 cut(s) 729
MalI GATC 2 cut(s) 129, 263
MboI GATC 2 cut(s) 127, 261
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 4 cut(s) 103, 149, 242, 688
MluNI TGGCCA 1 cut(s) 608
MlyI GAGTC 4 cut(s) 131, 416, 566, 737
MmeI TCCRAC 2 cut(s) 168, 705
Mox20I TGGCCA 1 cut(s) 608
MscI TGGCCA 1 cut(s) 608
MseI TTAA 2 cut(s) 792, 929
Msp20I TGGCCA 1 cut(s) 608
MspA1I CMGCKG 2 cut(s) 656, 1013
MspI CCGG 4 cut(s) 500, 506, 743, 761
MspR9I CCNGG 2 cut(s) 457, 610
Mva1269I GAATGC 1 cut(s) 1012
MvaI CCWGG 2 cut(s) 457, 610
MvnI CGCG 3 cut(s) 8, 198, 656
MwoI GCNNNNNNNGC 6 cut(s) 14, 83, 358, 425, 442, 457
NdeII GATC 2 cut(s) 127, 261
NlaIII CATG 1 cut(s) 568
NlaIV GGNNCC 1 cut(s) 504
NmuCI GTSAC 1 cut(s) 729
PaqCI CACCTGC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PctI GAATGC 1 cut(s) 1012
PfeI GAWTC 1 cut(s) 496
Pfl23II CGTACG 1 cut(s) 411
PkrI GCNGC 5 cut(s) 7, 19, 655, 741, 1012
PleI GAGTC 4 cut(s) 131, 415, 565, 736
PpsI GAGTC 4 cut(s) 131, 415, 565, 736
Psp6I CCWGG 2 cut(s) 455, 608
PspGI CCWGG 2 cut(s) 455, 608
PspLI CGTACG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 2 cut(s) 413, 580
RsaNI GTAC 2 cut(s) 412, 579
SacII CCGCGG 1 cut(s) 657
SaqAI TTAA 2 cut(s) 792, 929
SatI GCNGC 5 cut(s) 6, 18, 654, 740, 1011
Sau3AI GATC 2 cut(s) 127, 261
Sau96I GGNCC 1 cut(s) 298
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 4 cut(s) 131, 416, 566, 737
ScrFI CCNGG 2 cut(s) 457, 610
SfaNI GCATC 1 cut(s) 406
Sfr303I CCGCGG 1 cut(s) 657
SgrBI CCGCGG 1 cut(s) 657
SinI GGWCC 1 cut(s) 298
SmlI CTYRAG 3 cut(s) 173, 347, 574
SmoI CTYRAG 3 cut(s) 173, 347, 574
Sse9I AATT 4 cut(s) 103, 149, 242, 688
SsiI CCGC 7 cut(s) 6, 15, 274, 394, 654, 656, 696
StyD4I CCNGG 2 cut(s) 455, 608
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 67, 679
TaqI TCGA 3 cut(s) 306, 555, 617
TasI AATT 4 cut(s) 103, 149, 242, 688
TatI WGTACW 1 cut(s) 578
TauI GCSGC 2 cut(s) 8, 656
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 2 cut(s) 792, 929
Tru9I TTAA 2 cut(s) 792, 929
TseFI GTSAC 1 cut(s) 729
TseI GCWGC 3 cut(s) 17, 739, 1010
Tsp45I GTSAC 1 cut(s) 729
TspDTI ATGAA 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 3 cut(s) 103, 149, 242
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.