Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004127

Physical Location & Seq

Genomic Coordinates Reverse (-)

10127967 .. 10132489

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G091000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCTTCCGTGGGGTCGTCGACGGTGCAGAAAGCTGTAAATTCCCTCCTCAAATGGCGAAACTCCAAGTTGCAGACCGAGAAACCCGATCTCTTAGAATCCGACGAGTTCGCCTATCTCGTTCTCACCCTCAAGAAAATCCCACCAAAGGCCCGCGTAAACGCCTACAAAGTCCCTCTCCCAAATCCCCTCCATTCCCAGCTTTCCGAGCTCTGCTTGATATACGACGATGGGCCCAAGTCCAATCTCACCAAGGATTTCATCCAGAAGAAAATCAAGGCCGAGAATATACCCATCTCGAAAATTTTGAAGCTTTCGAAGCTCAAGTCTGCTTACGTGCCCTTTGAAGCCAAGAGAAAGCTGTTGCATTCTTATGATATGTTTTTGGTTGATAGGCGGATTGTGCCTTTGCTTCCGAAGTATTTGGGGAAGCAATTTTTTAAGAAGAAGAAGATTCCGGTGCCTGTAGACTTGGAGCACAAGAATTGGAAGGAGCAGGTTGACAGAGCATGTGAGTCAGCCTTGTTGTTCATGAGTACCGGGACGTGCAGCGTGGTGAGGGTAGCGAAGGTGTCCATGAGCGTTGATGAGATTGTGGAGAATGTGGTTGCGGCGATTAATGGGATTGTAGAGATTGTGCCTAAGAAGTGGAGGGATGTGAGGTCATTTCACTTGAAGTTTCTGGAGTCGCTTGCATTGCCGGTTTACCAGGCCGTGCCGGATTTGACATTGAAAATTGAGGGAGCTAAGAGTGATGAGGACGGTAAGGAGGCAGTGAAAGAGGTTGTCAAGTCTGAGAGTAAGGGTTTGAAGAGTGAGAAAGTGAGTAAGAAGAAGGGTAGAATTCATGAAGTGAGGTATATGGATAGCAATGCTGGTGAGGTGCTTGACGATGATGAATTGGTTGGTGATGGGGTTATTGGAGAAGGTAAGCAAAGTGAGAATGAAGAACCGGGTAGTGGTGAATTGGGGAAGAAGAAGAGGAAGAAGGAAAAGGTTGTTGGTGAGTCTAAGGGTGACAAAAGGTTGAAGAAGTCAGCTAAGGTGAAAGATGATGCTGAATTGAATGGGGAAAAGGTTCTCGGTGAGTTTAACAATAAGAAACAGTTGAAAAAGTCGACTAAGGTGAAAGATGGAGACGATGATATTCCTATTGAGAAACGGTTCAAAAAGTTGGCTAAGATGGTAGATGAAGATGATGCGACTATCAAGCATAAGAAAGATGGGGTGTCTTCGAAAGGGAAGAAAAAAGATGGTACAAAGAAGAAAGCAGATGATTTGCCAGTCAAGGGCGAAGAGTCTGTTGGAAAGAAGGAGAAGAGGAAGAGTGAACATGAGAAGTTGAAGAGCGGAGAAGCAAAGCTGAAGACGGCTAAGAGAAGTAAGAAAGCAACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0010941 GO:0031974 GO:0031981 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0090342 GO:2000772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

467

Amino Acids

52.2

Weight (kDa)

9.58

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06380 AT2G42650 AT3G58660
fragaria_vesca	FvH4_4g16980 FvH4_6g38200
malus_domestica	MD09G1152200.v1.1 MD17G1139700.v1.1
prunus_persica	Prupe.3G172300_v2.0.a1 Prupe.5G091000_v2.0.a1
pyrus_communis	pycom09g07150 pycom17g13280
rosa_chinensis	RchiOBHm_Chr2g0151461 RchiOBHm_Chr4g0420651
rosa_laevigata	RLG00000007744 RLG00000020550
rosa_multiflora	Rmu_co8481729.1_g000001 Rmu_sc0000940.1_g000011 Rmu_sc0007337.1_g000002 Rmu_sc0011080.1_g000010
rosa_roxburghii	Rroxscaffold_2G00096450 Rroxscaffold_5G00363190
rosa_rugosa	Rorug02G0426100 Rorug04G0165100
rosa_samantha	Rh2AG486900 Rh2BG499300 Rh2CG473400 Rh4AG226700 Rh4BG229300 Rh4CG241700 Rh4DG225000
rosa_wichuraiana	Rw2G039910 Rw4G019600 Rw4G019620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	460
AccBSI	CCGCTC	1 cut(s)	1350
AccI	GTMKAC	3 cut(s)	20, 468, 1118
AccII	CGCG	1 cut(s)	156
AciI	CCGC	4 cut(s)	154, 397, 611, 1350
AcsI	RAATTY	3 cut(s)	40, 303, 843
AcuI	CTGAAG	1 cut(s)	1385
AfaI	GTAC	2 cut(s)	538, 1258
AfiI	CCNNNNNNNGG	3 cut(s)	148, 959, 1289
AjiI	CACGTC	1 cut(s)	546
AjnI	CCWGG	1 cut(s)	708
AjuI	GAANNNNNNNTTGG	4 cut(s)	984, 1016, 1287, 1319
AluBI	AGCT	9 cut(s)	35, 202, 211, 313, 322, 361, 746, 1040, 1363
AluI	AGCT	9 cut(s)	35, 202, 211, 313, 322, 361, 746, 1040, 1363
Alw21I	GWGCWC	2 cut(s)	213, 480
Alw26I	GTCTC	1 cut(s)	1131
AoxI	GGCC	4 cut(s)	150, 233, 279, 711
ApaI	GGGCCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	549
ApoI	RAATTY	3 cut(s)	40, 303, 843
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AseI	ATTAAT	1 cut(s)	618
Asp700I	GAANNNNTTC	2 cut(s)	1077, 1163
AspS9I	GGNCC	3 cut(s)	151, 233, 234
AsuC2I	CCSGG	2 cut(s)	541, 954
AsuII	TTCGAA	2 cut(s)	317, 1235
BaeGI	GKGCMC	2 cut(s)	237, 342
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	2 cut(s)	213, 237
BbsI	GAAGAC	2 cut(s)	1224, 1373
Bbv12I	GWGCWC	2 cut(s)	213, 480
BbvI	GCAGC	1 cut(s)	561
BccI	CCATC	7 cut(s)	224, 302, 905, 1127, 1177, 1217, 1247
BceAI	ACGGC	2 cut(s)	698, 1386
BciT130I	CCWGG	1 cut(s)	710
BcnI	CCSGG	2 cut(s)	541, 954
BcoDI	GTCTC	1 cut(s)	1131
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	550, 612
BlsI	GCNGC	2 cut(s)	551, 613
Bme1390I	CCNGG	3 cut(s)	541, 710, 954
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	151, 233, 234
BmiI	GGNNCC	2 cut(s)	235, 462
BmrFI	CCNGG	3 cut(s)	541, 710, 954
BmsI	GCATC	2 cut(s)	1045, 1189
BpiI	GAAGAC	2 cut(s)	1224, 1373
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	1041
Bpu14I	TTCGAA	2 cut(s)	317, 1235
BpuEI	CTTGAG	2 cut(s)	116, 308
BpuMI	CCSGG	2 cut(s)	541, 954
BsaAI	YACGTR	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	9, 252
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 959, 1289
Bse118I	RCCGGY	1 cut(s)	700
Bse1I	ACTGG	1 cut(s)	1283
Bse3DI	GCAATG	2 cut(s)	695, 877
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	2 cut(s)	9, 252
BseGI	GGATG	2 cut(s)	261, 661
BseLI	CCNNNNNNNGG	3 cut(s)	148, 959, 1289
BseMI	GCAATG	2 cut(s)	695, 877
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	1 cut(s)	1283
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	2 cut(s)	237, 342
BseXI	GCAGC	1 cut(s)	561
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	2 cut(s)	47, 568
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	152, 235, 281, 713
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	213, 480
BsiSI	CCGG	5 cut(s)	458, 540, 701, 719, 953
BslFI	GGGAC	2 cut(s)	158, 556
BslI	CCNNNNNNNGG	3 cut(s)	148, 959, 1289
BsmAI	GTCTC	1 cut(s)	1131
BsmBI	CGTCTC	1 cut(s)	1131
BsmFI	GGGAC	2 cut(s)	158, 556
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	152, 235, 281, 713
Bsp119I	TTCGAA	2 cut(s)	317, 1235
Bsp120I	GGGCCC	1 cut(s)	233
Bsp1286I	GDGCHC	4 cut(s)	213, 237, 342, 480
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	4 cut(s)	154, 397, 611, 1350
BspANI	GGCC	4 cut(s)	152, 235, 281, 713
BspCNI	CTCAG	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	2 cut(s)	531, 847
BspLI	GGNNCC	2 cut(s)	235, 462
BspMI	ACCTGC	1 cut(s)	487
BspQI	GCTCTTC	1 cut(s)	1340
BspT104I	TTCGAA	2 cut(s)	317, 1235
BspT107I	GGYRCC	1 cut(s)	460
BsrBI	CCGCTC	1 cut(s)	1350
BsrDI	GCAATG	2 cut(s)	695, 877
BsrFI	RCCGGY	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	1283
BssAI	RCCGGY	1 cut(s)	700
BssECI	CCNNGG	2 cut(s)	9, 252
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	4 cut(s)	25, 764, 1107, 1164
Bst6I	CTCTTC	6 cut(s)	806, 974, 1290, 1313, 1319, 1340
BstBAI	YACGTR	1 cut(s)	337
BstBI	TTCGAA	2 cut(s)	317, 1235
BstC8I	GCNNGC	2 cut(s)	154, 693
BstDEI	CTNAG	9 cut(s)	94, 642, 747, 795, 1011, 1041, 1122, 1179, 1374
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	261, 661
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	1131
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 319, 403, 697
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	1 cut(s)	513
BstSCI	CCNGG	3 cut(s)	539, 708, 952
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	2 cut(s)	237, 342
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	561
BstV2I	GAAGAC	2 cut(s)	1224, 1373
BsuRI	GGCC	4 cut(s)	152, 235, 281, 713
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	261, 661
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	1 cut(s)	780
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	2 cut(s)	154, 693
CciI	TCATGA	2 cut(s)	531, 847
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	3 cut(s)	151, 233, 234
Csp6I	GTAC	2 cut(s)	537, 1257
CviAII	CATG	5 cut(s)	510, 532, 577, 848, 1334
CviQI	GTAC	2 cut(s)	537, 1257
DdeI	CTNAG	9 cut(s)	94, 642, 747, 795, 1011, 1041, 1122, 1179, 1374
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	6 cut(s)	806, 974, 1290, 1313, 1319, 1340
EarI	CTCTTC	6 cut(s)	806, 974, 1290, 1313, 1319, 1340
EciI	GGCGGA	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	2 cut(s)	213, 237
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	1385
EcoICRI	GAGCTC	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	843
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	213, 237
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	1131
FaeI	CATG	5 cut(s)	513, 535, 580, 851, 1337
FaqI	GGGAC	2 cut(s)	158, 556
FatI	CATG	5 cut(s)	509, 531, 576, 847, 1333
FauI	CCCGC	1 cut(s)	161
FblI	GTMKAC	3 cut(s)	20, 468, 1118
Fnu4HI	GCNGC	2 cut(s)	550, 612
FokI	GGATG	2 cut(s)	248, 668
FriOI	GRGCYC	2 cut(s)	213, 237
Fsp4HI	GCNGC	2 cut(s)	550, 612
GluI	GCNGC	2 cut(s)	550, 612
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	4 cut(s)	152, 235, 281, 713
HapII	CCGG	5 cut(s)	458, 540, 701, 719, 953
Hin1II	CATG	5 cut(s)	513, 535, 580, 851, 1337
HincII	GTYRAC	3 cut(s)	21, 502, 1119
HindII	GTYRAC	3 cut(s)	21, 502, 1119
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	6 cut(s)	98, 454, 515, 686, 1007, 1298
HpaII	CCGG	5 cut(s)	458, 540, 701, 719, 953
Hpy166II	GTNNAC	7 cut(s)	21, 160, 469, 502, 706, 1119, 1331
Hpy188I	TCNGA	4 cut(s)	103, 208, 417, 796
Hpy188III	TCNNGA	6 cut(s)	133, 265, 298, 532, 683, 848
Hpy8I	GTNNAC	7 cut(s)	21, 160, 469, 502, 706, 1119, 1331
Hpy99I	CGWCG	4 cut(s)	22, 25, 107, 230
HpyAV	CCTTC	6 cut(s)	484, 562, 829, 920, 982, 1306
HpyCH4III	ACNGT	4 cut(s)	25, 764, 1107, 1164
HpyCH4IV	ACGT	2 cut(s)	336, 545
HpyCH4V	TGCA	5 cut(s)	28, 73, 367, 549, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 319, 403, 697
HpyF3I	CTNAG	9 cut(s)	94, 642, 747, 795, 1011, 1041, 1122, 1179, 1374
HpySE526I	ACGT	2 cut(s)	336, 545
Hsp92II	CATG	5 cut(s)	513, 535, 580, 851, 1337
Kzo9I	GATC	1 cut(s)	88
LguI	GCTCTTC	1 cut(s)	1340
LmnI	GCTCC	3 cut(s)	475, 493, 743
Lsp1109I	GCAGC	1 cut(s)	561
LweI	GCATC	2 cut(s)	1045, 1189
MaeII	ACGT	2 cut(s)	336, 545
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	1 cut(s)	90
MbiI	CCGCTC	1 cut(s)	1350
MboI	GATC	1 cut(s)	88
MhlI	GDGCHC	4 cut(s)	213, 237, 342, 480
MluCI	AATT	9 cut(s)	40, 303, 434, 484, 735, 843, 899, 965, 1061
MlyI	GAGTC	4 cut(s)	524, 695, 1016, 1307
MmeI	TCCRAC	2 cut(s)	126, 1285
MroXI	GAANNNNTTC	2 cut(s)	1077, 1163
MseI	TTAA	3 cut(s)	441, 618, 1092
MslI	CAYNNNNRTG	1 cut(s)	372
MspI	CCGG	5 cut(s)	458, 540, 701, 719, 953
MspR9I	CCNGG	3 cut(s)	541, 710, 954
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	208, 319, 403, 697
NciI	CCSGG	2 cut(s)	541, 954
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	5 cut(s)	513, 535, 580, 851, 1337
NlaIV	GGNNCC	2 cut(s)	235, 462
NmeAIII	GCCGAG	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	1016
NspI	RCATGY	1 cut(s)	513
NspV	TTCGAA	2 cut(s)	317, 1235
PagI	TCATGA	2 cut(s)	531, 847
PciSI	GCTCTTC	1 cut(s)	1340
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	2 cut(s)	1077, 1163
PfeI	GAWTC	2 cut(s)	98, 454
PkrI	GCNGC	2 cut(s)	551, 613
PleI	GAGTC	4 cut(s)	523, 694, 1015, 1306
PpsI	GAGTC	4 cut(s)	523, 694, 1015, 1306
Ppu21I	YACGTR	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	618
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	235, 462
PspOMI	GGGCCC	1 cut(s)	233
PspPI	GGNCC	3 cut(s)	151, 233, 234
RsaI	GTAC	2 cut(s)	538, 1258
RsaNI	GTAC	2 cut(s)	537, 1257
RseI	CAYNNNNRTG	1 cut(s)	372
SacI	GAGCTC	1 cut(s)	213
SalI	GTCGAC	2 cut(s)	19, 1117
SapI	GCTCTTC	1 cut(s)	1340
SaqAI	TTAA	3 cut(s)	441, 618, 1092
SatI	GCNGC	2 cut(s)	550, 612
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	151, 233, 234
SchI	GAGTC	4 cut(s)	524, 695, 1016, 1307
ScrFI	CCNGG	3 cut(s)	541, 710, 954
SduI	GDGCHC	4 cut(s)	213, 237, 342, 480
SfaNI	GCATC	2 cut(s)	1045, 1189
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	2 cut(s)	317, 1235
SgrDI	CGTCGACG	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	131, 323
SmoI	CTYRAG	2 cut(s)	131, 323
Sse9I	AATT	9 cut(s)	40, 303, 434, 484, 735, 843, 899, 965, 1061
SsiI	CCGC	4 cut(s)	154, 397, 611, 1350
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	539, 708, 952
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	4 cut(s)	25, 764, 1107, 1164
TaiI	ACGT	2 cut(s)	339, 548
TaqI	TCGA	5 cut(s)	20, 299, 317, 1118, 1235
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	9 cut(s)	40, 303, 434, 484, 735, 843, 899, 965, 1061
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	2 cut(s)	98, 454
Tru1I	TTAA	3 cut(s)	441, 618, 1092
Tru9I	TTAA	3 cut(s)	441, 618, 1092
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	1 cut(s)	1016
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	1 cut(s)	1016
TspDTI	ATGAA	7 cut(s)	250, 520, 836, 864, 912, 960, 1206
TspRI	CASTG	1 cut(s)	780
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	3 cut(s)	40, 303, 843
XceI	RCATGY	1 cut(s)	513
XmiI	GTMKAC	3 cut(s)	20, 468, 1118
XmnI	GAANNNNTTC	2 cut(s)	1077, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.