RchiOBHm_Chr4g0420651

Ribosomal L1 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004127
Physical Location & Seq
Forward (+)
46424455 .. 46425859
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39038

Sequence Viewer

Length: 1002 bp
ATGGCCGCGACCACCGCAGCTCCTCCACCTTCCAAATCCACACCCACCAAACTCAACCCCAAGACCGTACGAAAAGCCGTCAATGCCCTCCTCAAATGGAGAAATTCCCAGACCCAGAACCCCGACGATCTCTTAGACTCCTCCGACGAATTCACCTACCTCGTCCTCACCCTCAAGAAAATCCCACCAAAGGGTCGCGTCAACGCCTTCAAAATCCCTCTCCCTAATCCCCTCCTCTCCGAATTCACCCAGTTCTGCCTGATCTACGACGACGGCCCCAAGTCCAAGCTCACCAAGGACCAAATCGACAAGAGGATCAAAACCCACAACTTACCCATCACCAAAACACTCAAGCTCTCCAAGCTCAAATCCGATTACAAGTCTTTTGAGGCCAAGCGGAAGCTGATGGAGTCGTATGATGCGTTTCTGGCTGATAAGCAGATTGTGCCGTTGCTTCCCAGGCTTTTGGGGAAGCAGTTCTTCAAGAAGAAGAGGATGATTCCGGTGCCGGTGGACTTGCAACAGAAGAACTGGAAGGAGCAGGTGGATAGGGTTATCGAGTCGGCGATGTTGTTCTTGAGTACTGGGACTTGTAGTGTTGTGAGGGTGGCCAGGACTTCGATGAGTGCTGAGCAGATTGTTGAGAATGTGGTTGCCGCCGTTGATGGGATTGTGGAGATTGTTCCGAGGAATTGGGGCGGTGTGAGGTCGTTTCATTTGAAGCTGTTGGAGTCACTTGCGCTGCCGGTGTATCAGGCTGTGCCGGATGAGACATTGTTGAAGATTGAGGGAGTTAAGGGGAGCGAGAAAGAGGTTGTGAAGAATGAGAAAGTGGGTAAGAAGAAGGGTAGGATTAGTGAAGTGAGGTATATGGATAGAAATGTTGGGGAGGTGCTTGATGAGGATGAGTTAAGTGATGGTGTCATTGTCGACAAGGAGAAGAGGAAGAGTGAAGACGCAAAGCTGAAGAAAGCTAAGAGGAGTAAGAATGCAGCAGAGTGA

Protein Analysis

333

Amino Acids

37.51

Weight (kDa)

9.67

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 49 - 245 1.1e-43 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
Acc36I ACCTGC 1 cut(s) 532
AccB1I GGYRCC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 930
AccII CGCG 2 cut(s) 8, 198
AciI CCGC 5 cut(s) 6, 15, 397, 657, 699
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 2 cut(s) 3, 609
AcsI RAATTY 3 cut(s) 103, 149, 242
AcuI CTGAAG 1 cut(s) 986
AfaI GTAC 2 cut(s) 69, 583
AfiI CCNNNNNNNGG 3 cut(s) 190, 191, 666
AgsI TTSAA 4 cut(s) 211, 484, 721, 781
AjnI CCWGG 2 cut(s) 458, 611
AluBI AGCT 8 cut(s) 20, 289, 355, 364, 403, 724, 964, 974
AluI AGCT 8 cut(s) 20, 289, 355, 364, 403, 724, 964, 974
Alw26I GTCTC 1 cut(s) 764
AlwI GGATC 1 cut(s) 323
AoxI GGCC 4 cut(s) 3, 274, 390, 609
ApeKI GCWGC 3 cut(s) 17, 742, 992
ApoI RAATTY 3 cut(s) 103, 149, 242
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 2 cut(s) 275, 298
AsuHPI GGTGA 5 cut(s) 145, 160, 238, 283, 331
AvaII GGWCC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 960
BbvI GCAGC 2 cut(s) 29, 729
BccI CCATC 4 cut(s) 344, 400, 659, 911
BceAI ACGGC 4 cut(s) 62, 289, 433, 644
BciT130I CCWGG 2 cut(s) 460, 613
BcoDI GTCTC 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 532
BisI GCNGC 5 cut(s) 6, 18, 657, 743, 993
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 5 cut(s) 7, 19, 658, 744, 994
BmcAI AGTACT 1 cut(s) 583
Bme1390I CCNGG 2 cut(s) 460, 613
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 275, 298
BmiI GGNNCC 2 cut(s) 277, 507
BmrFI CCNGG 2 cut(s) 460, 613
BmrI ACTGGG 2 cut(s) 244, 594
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 2 cut(s) 244, 594
BpiI GAAGAC 1 cut(s) 960
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 3 cut(s) 158, 335, 598
BsaJI CCNNGG 3 cut(s) 294, 458, 686
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 191, 666
Bse118I RCCGGY 2 cut(s) 508, 745
Bse1I ACTGG 3 cut(s) 250, 536, 589
BseBI CCWGG 2 cut(s) 460, 613
BseDI CCNNGG 3 cut(s) 294, 458, 686
BseGI GGATG 3 cut(s) 501, 772, 910
BseLI CCNNNNNNNGG 3 cut(s) 190, 191, 666
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 3 cut(s) 250, 536, 589
BseRI GAGGAG 5 cut(s) 12, 80, 130, 224, 994
BseXI GCAGC 2 cut(s) 29, 729
Bsh1236I CGCG 2 cut(s) 8, 198
BshFI GGCC 4 cut(s) 5, 276, 392, 611
BshNI GGYRCC 1 cut(s) 505
BsiSI CCGG 4 cut(s) 503, 509, 746, 764
BsiWI CGTACG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 3 cut(s) 190, 191, 666
BsmAI GTCTC 1 cut(s) 764
BsmFI GGGAC 1 cut(s) 601
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 4 cut(s) 5, 276, 392, 611
Bsp143I GATC 3 cut(s) 127, 261, 315
Bsp1720I GCTNAGC 1 cut(s) 630
BspACI CCGC 5 cut(s) 6, 15, 397, 657, 699
BspANI GGCC 4 cut(s) 5, 276, 392, 611
BspCNI CTCAG 1 cut(s) 622
BspFNI CGCG 2 cut(s) 8, 198
BspLI GGNNCC 2 cut(s) 277, 507
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 505
BsrFI RCCGGY 2 cut(s) 508, 745
BsrI ACTGG 3 cut(s) 250, 536, 589
BssAI RCCGGY 2 cut(s) 508, 745
BssECI CCNNGG 3 cut(s) 294, 458, 686
BssMI GATC 3 cut(s) 127, 261, 315
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 460, 613
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 3 cut(s) 485, 935, 941
BstAPI GCANNNNNTGC 1 cut(s) 445
BstDEI CTNAG 3 cut(s) 133, 630, 975
BstF5I GGATG 3 cut(s) 501, 772, 910
BstFNI CGCG 2 cut(s) 8, 198
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 3 cut(s) 130, 264, 318
BstMAI GTCTC 1 cut(s) 764
BstMBI GATC 3 cut(s) 127, 261, 315
BstMWI GCNNNNNNNGC 6 cut(s) 14, 83, 361, 428, 445, 460
BstNI CCWGG 2 cut(s) 460, 613
BstSCI CCNGG 2 cut(s) 458, 611
BstUI CGCG 2 cut(s) 8, 198
BstV1I GCAGC 2 cut(s) 29, 729
BstV2I GAAGAC 1 cut(s) 960
BstXI CCANNNNNNTGG 1 cut(s) 466
BsuRI GGCC 4 cut(s) 5, 276, 392, 611
BtgZI GCGATG 1 cut(s) 581
BtsCI GGATG 3 cut(s) 501, 772, 910
BveI ACCTGC 1 cut(s) 532
CfoI GCGC 1 cut(s) 742
Cfr10I RCCGGY 2 cut(s) 508, 745
Cfr13I GGNCC 2 cut(s) 275, 298
CseI GACGC 2 cut(s) 187, 965
Csp6I GTAC 2 cut(s) 68, 582
CviQI GTAC 2 cut(s) 68, 582
DdeI CTNAG 3 cut(s) 133, 630, 975
DpnI GATC 3 cut(s) 129, 263, 317
DpnII GATC 3 cut(s) 127, 261, 315
EaeI YGGCCR 2 cut(s) 3, 609
Eam1104I CTCTTC 3 cut(s) 485, 935, 941
EarI CTCTTC 3 cut(s) 485, 935, 941
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 986
EcoRI GAATTC 2 cut(s) 149, 242
EcoRII CCWGG 2 cut(s) 458, 611
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaiI YATR 3 cut(s) 417, 870, 872
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 1 cut(s) 601
FblI GTMKAC 1 cut(s) 930
Fnu4HI GCNGC 5 cut(s) 6, 18, 657, 743, 993
FokI GGATG 3 cut(s) 508, 779, 917
Fsp4HI GCNGC 5 cut(s) 6, 18, 657, 743, 993
GlaI GCGC 1 cut(s) 741
GluI GCNGC 5 cut(s) 6, 18, 657, 743, 993
HaeIII GGCC 4 cut(s) 5, 276, 392, 611
HapII CCGG 4 cut(s) 503, 509, 746, 764
HgaI GACGC 2 cut(s) 187, 965
HhaI GCGC 1 cut(s) 742
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HincII GTYRAC 2 cut(s) 202, 931
HindII GTYRAC 2 cut(s) 202, 931
HinfI GANTC 5 cut(s) 137, 410, 499, 560, 731
HpaII CCGG 4 cut(s) 503, 509, 746, 764
HphI GGTGA 5 cut(s) 145, 160, 238, 283, 331
Hpy166II GTNNAC 3 cut(s) 202, 514, 931
Hpy188I TCNGA 4 cut(s) 145, 241, 373, 687
Hpy188III TCNNGA 3 cut(s) 175, 484, 577
Hpy8I GTNNAC 3 cut(s) 202, 514, 931
Hpy99I CGWCG 4 cut(s) 128, 149, 272, 275
HpyAV CCTTC 4 cut(s) 39, 217, 529, 838
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 520, 992
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 83, 361, 428, 445, 460
HpyF3I CTNAG 3 cut(s) 133, 630, 975
HspAI GCGC 1 cut(s) 740
Kzo9I GATC 3 cut(s) 127, 261, 315
LmnI GCTCC 3 cut(s) 25, 538, 801
Lsp1109I GCAGC 2 cut(s) 29, 729
LweI GCATC 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 732
MalI GATC 3 cut(s) 129, 263, 317
MboI GATC 3 cut(s) 127, 261, 315
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 4 cut(s) 103, 149, 242, 691
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 4 cut(s) 131, 419, 569, 740
MmeI TCCRAC 2 cut(s) 168, 708
Mox20I TGGCCA 1 cut(s) 611
MroXI GAANNNNTTC 1 cut(s) 476
MscI TGGCCA 1 cut(s) 611
MseI TTAA 2 cut(s) 795, 911
Msp20I TGGCCA 1 cut(s) 611
MspI CCGG 4 cut(s) 503, 509, 746, 764
MspR9I CCNGG 2 cut(s) 460, 613
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 2 cut(s) 460, 613
MvnI CGCG 2 cut(s) 8, 198
MwoI GCNNNNNNNGC 6 cut(s) 14, 83, 361, 428, 445, 460
NdeII GATC 3 cut(s) 127, 261, 315
NlaIV GGNNCC 2 cut(s) 277, 507
NmuCI GTSAC 1 cut(s) 732
PaqCI CACCTGC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 1 cut(s) 994
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 1 cut(s) 499
Pfl23II CGTACG 1 cut(s) 67
PkrI GCNGC 5 cut(s) 7, 19, 658, 744, 994
PleI GAGTC 4 cut(s) 131, 418, 568, 739
PpsI GAGTC 4 cut(s) 131, 418, 568, 739
Psp6I CCWGG 2 cut(s) 458, 611
PspGI CCWGG 2 cut(s) 458, 611
PspLI CGTACG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 277, 507
PspPI GGNCC 2 cut(s) 275, 298
RsaI GTAC 2 cut(s) 69, 583
RsaNI GTAC 2 cut(s) 68, 582
SalI GTCGAC 1 cut(s) 929
SaqAI TTAA 2 cut(s) 795, 911
SatI GCNGC 5 cut(s) 6, 18, 657, 743, 993
Sau3AI GATC 3 cut(s) 127, 261, 315
Sau96I GGNCC 2 cut(s) 275, 298
ScaI AGTACT 1 cut(s) 583
SchI GAGTC 4 cut(s) 131, 419, 569, 740
ScrFI CCNGG 2 cut(s) 460, 613
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 1 cut(s) 298
SmlI CTYRAG 3 cut(s) 173, 350, 577
SmoI CTYRAG 3 cut(s) 173, 350, 577
Sse9I AATT 4 cut(s) 103, 149, 242, 691
SsiI CCGC 5 cut(s) 6, 15, 397, 657, 699
StyD4I CCNGG 2 cut(s) 458, 611
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 4 cut(s) 306, 558, 620, 930
TasI AATT 4 cut(s) 103, 149, 242, 691
TatI WGTACW 1 cut(s) 581
TauI GCSGC 2 cut(s) 8, 659
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 2 cut(s) 795, 911
Tru9I TTAA 2 cut(s) 795, 911
TseFI GTSAC 1 cut(s) 732
TseI GCWGC 3 cut(s) 17, 742, 992
Tsp45I GTSAC 1 cut(s) 732
TspDTI ATGAA 1 cut(s) 704
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 3 cut(s) 103, 149, 242
XmiI GTMKAC 1 cut(s) 930
XmnI GAANNNNTTC 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.