Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012875

Physical Location & Seq

Genomic Coordinates Forward (+)

16399969 .. 16401671

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGGTTTCTCACCGTCTCCTCAGGCCGGCGACGACGACGATAAAGAATACTTTTTCTTCTCTCTTTATTAGGTCTCTCTCTTCTTCTTCGTCTGGGTCCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCTGCGGCTCAGCTCGGGAAGTCTTCGTCTACGTCAACGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGATGTCCTGGTGTTGGTAAAGGAACCTATGCCTCTCGTCTCTCTTCTCTCCTCGGCGTTCCTCATATTGCCACTGGTGATCTCGTTCGTGAAGAGCTCTCCTCCTCTGGCCTCCTCTCCTCTCAGCTCAAGGAGCTTGTTAACCATGGAAAACTAGTTCCTGATGAATTCATAATAAGTTTGTTATCAAAGCGTCTCCAAGCTGGCAAAGACAAGGGTGAATCTGGATACATTCTTGATGGTTTTCCACGCACCGTGACTCAAGCGGAAATACTGGAGGGAGTAACTAATATCGATCTGGTGATTAACCTGAAGCTACGAGAAGAGGCATTGCTTGCGAAATGTTTAGGAAGAAGAATTTGCAGCGAGTGTGGTGGAAACTATAACGTTGCCTGCATTGATATCAAAGGTGATGATGATACTCCCAGAATGTATATGCCTCCTCTTCTTCCTCCGCCAAACTGTGAATCGAAGCTTATAAGCCGAGCTGATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATGACTCAACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTTGAATTGCCCGGTGGAATCCCAGAGTCATGGGCAAGGCTCCTTAGGGCATTACACCTTGAAGACGATAAACAGTCTGCAATAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006139 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0046940 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0071704 GO:0090407 GO:0099402 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

295

Amino Acids

32.39

Weight (kDa)

7.6

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	70 - 262	1.6e-38	Adenylate kinase
AAA_17	PF13207	70 - 189	6e-22	AAA domain
AAA_18	PF13238	70 - 188	1.8e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39270
fragaria_vesca	FvH4_7g20530
malus_domestica	MD01G1114300.v1.1 MD07G1182200.v1.1
prunus_persica	Prupe.2G220900_v2.0.a1
pyrus_communis	pycom01g14330 pycom07g17490
rosa_chinensis	RchiOBHm_Chr1g0364421
rosa_laevigata	RLG00000027481
rosa_multiflora	Rmu_sc0001342.1_g000005
rosa_roxburghii	Rroxscaffold_4G00292290
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324300 Rh1BG287000 Rh1CG303600 Rh1DG318500
rosa_wichuraiana	Rw1G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	161
AccII	CGCG	1 cut(s)	783
AciI	CCGC	5 cut(s)	5, 137, 476, 665, 783
AclI	AACGTT	1 cut(s)	597
AcsI	RAATTY	5 cut(s)	190, 377, 567, 767, 797
AcuI	CTGAAG	2 cut(s)	542, 729
AdeI	CACNNNGTG	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	28, 182, 224
AgsI	TTSAA	2 cut(s)	803, 860
AhlI	ACTAGT	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	217
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	9 cut(s)	145, 307, 337, 346, 413, 526, 685, 698, 790
AluI	AGCT	9 cut(s)	145, 307, 337, 346, 413, 526, 685, 698, 790
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	5 cut(s)	23, 81, 177, 254, 410
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	26, 319
ApeKI	GCWGC	2 cut(s)	134, 573
ApoI	RAATTY	5 cut(s)	190, 377, 567, 767, 797
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	5 cut(s)	5, 299, 440, 523, 632
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	2 cut(s)	23, 842
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	147, 867
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	121, 585
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	810
BcoDI	GTCTC	5 cut(s)	23, 81, 177, 254, 410
BcuI	ACTAGT	1 cut(s)	364
BfaI	CTAG	2 cut(s)	107, 365
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	3 cut(s)	135, 138, 574
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	3 cut(s)	136, 139, 575
Bme1390I	CCNGG	2 cut(s)	219, 810
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	100, 235, 839
BmrFI	CCNGG	2 cut(s)	219, 810
BmrI	ACTGGG	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	147, 867
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	2 cut(s)	146, 506
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	323, 456
BpuMI	CCSGG	1 cut(s)	810
Bsa29I	ATCGAT	2 cut(s)	120, 504
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	262, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 182, 224
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	4 cut(s)	203, 289, 489, 758
Bse21I	CCTNAGG	2 cut(s)	23, 842
Bse3DI	GCAATG	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	2 cut(s)	120, 504
BseDI	CCNNGG	2 cut(s)	262, 355
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	28, 182, 224
BseMI	GCAATG	1 cut(s)	539
BseMII	CTCAG	4 cut(s)	37, 155, 347, 745
BseNI	ACTGG	4 cut(s)	203, 289, 489, 758
BseRI	GAGGAG	8 cut(s)	11, 143, 251, 301, 304, 314, 319, 642
BseXI	GCAGC	2 cut(s)	121, 585
Bsh1236I	CGCG	1 cut(s)	783
BshFI	GGCC	2 cut(s)	28, 321
BshVI	ATCGAT	2 cut(s)	120, 504
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	29, 810
BslI	CCNNNNNNNGG	3 cut(s)	28, 182, 224
BsmAI	GTCTC	5 cut(s)	23, 81, 177, 254, 410
BsmBI	CGTCTC	4 cut(s)	23, 177, 254, 410
BsnI	GGCC	2 cut(s)	28, 321
Bso31I	GGTCTC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	121, 289, 505
Bsp1720I	GCTNAGC	1 cut(s)	141
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	5 cut(s)	5, 137, 476, 665, 783
BspANI	GGCC	2 cut(s)	28, 321
BspCNI	CTCAG	4 cut(s)	36, 154, 346, 744
BspDI	ATCGAT	2 cut(s)	120, 504
BspFNI	CGCG	1 cut(s)	783
BspLI	GGNNCC	3 cut(s)	100, 235, 839
BspQI	GCTCTTC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	539
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	4 cut(s)	203, 289, 489, 758
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	262, 355
BssMI	GATC	3 cut(s)	121, 289, 505
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	4 cut(s)	17, 466, 674, 873
Bst6I	CTCTTC	5 cut(s)	88, 259, 297, 528, 660
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	4 cut(s)	30, 415, 546, 604
BstDEI	CTNAG	5 cut(s)	23, 141, 333, 731, 842
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	218
BstFNI	CGCG	1 cut(s)	783
BstKTI	GATC	3 cut(s)	124, 292, 508
BstMAI	GTCTC	5 cut(s)	23, 81, 177, 254, 410
BstMBI	GATC	3 cut(s)	121, 289, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 545
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	217, 808
BstUI	CGCG	1 cut(s)	783
BstV1I	GCAGC	2 cut(s)	121, 585
BstV2I	GAAGAC	2 cut(s)	147, 867
BstXI	CCANNNNNNTGG	1 cut(s)	828
Bsu15I	ATCGAT	2 cut(s)	120, 504
Bsu36I	CCTNAGG	2 cut(s)	23, 842
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	28, 321
BsuTUI	ATCGAT	2 cut(s)	120, 504
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	4 cut(s)	196, 282, 705, 765
Cac8I	GCNNGC	4 cut(s)	30, 415, 546, 604
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	99
ClaI	ATCGAT	2 cut(s)	120, 504
CseI	GACGC	1 cut(s)	392
CviAII	CATG	2 cut(s)	356, 828
DdeI	CTNAG	5 cut(s)	23, 141, 333, 731, 842
DpnI	GATC	3 cut(s)	123, 291, 507
DpnII	GATC	3 cut(s)	121, 289, 505
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	5 cut(s)	88, 259, 297, 528, 660
EarI	CTCTTC	5 cut(s)	88, 259, 297, 528, 660
EciI	GGCGGA	1 cut(s)	654
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	542, 729
Eco81I	CCTNAGG	2 cut(s)	23, 842
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRI	GAATTC	2 cut(s)	377, 767
EcoRII	CCWGG	1 cut(s)	217
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	355
Esp3I	CGTCTC	4 cut(s)	23, 177, 254, 410
FaeI	CATG	2 cut(s)	359, 831
FatI	CATG	2 cut(s)	355, 827
FauI	CCCGC	1 cut(s)	776
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	135, 138, 574
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	135, 138, 574
FspBI	CTAG	2 cut(s)	107, 365
GluI	GCNGC	3 cut(s)	135, 138, 574
GsuI	CTGGAG	2 cut(s)	146, 506
HaeIII	GGCC	2 cut(s)	28, 321
HapII	CCGG	2 cut(s)	29, 810
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	359, 831
HincII	GTYRAC	2 cut(s)	168, 352
HindII	GTYRAC	2 cut(s)	168, 352
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	7 cut(s)	431, 469, 677, 729, 751, 816, 824
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	2 cut(s)	29, 810
HphI	GGTGA	5 cut(s)	5, 299, 440, 523, 632
Hpy166II	GTNNAC	3 cut(s)	162, 168, 352
Hpy188III	TCNNGA	7 cut(s)	125, 148, 299, 371, 435, 446, 733
Hpy8I	GTNNAC	3 cut(s)	162, 168, 352
Hpy99I	CGWCG	3 cut(s)	37, 40, 43
HpyCH4III	ACNGT	4 cut(s)	17, 466, 674, 873
HpyCH4IV	ACGT	3 cut(s)	164, 170, 597
HpyCH4V	TGCA	3 cut(s)	573, 606, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 545
HpyF3I	CTNAG	5 cut(s)	23, 141, 333, 731, 842
HpySE526I	ACGT	3 cut(s)	164, 170, 597
Hsp92II	CATG	2 cut(s)	359, 831
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	121, 289, 505
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	343, 843
Lsp1109I	GCAGC	2 cut(s)	121, 585
MaeI	CTAG	2 cut(s)	107, 365
MaeII	ACGT	3 cut(s)	164, 170, 597
MaeIII	GTNAC	2 cut(s)	466, 493
MalI	GATC	3 cut(s)	123, 291, 507
MboI	GATC	3 cut(s)	121, 289, 505
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	6 cut(s)	190, 377, 567, 767, 797, 803
MlyI	GAGTC	4 cut(s)	463, 723, 745, 833
MmeI	TCCRAC	1 cut(s)	774
MroNI	GCCGGC	1 cut(s)	28
MseI	TTAA	2 cut(s)	351, 516
MspI	CCGG	2 cut(s)	29, 810
MspR9I	CCNGG	2 cut(s)	219, 810
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	783
MwoI	GCNNNNNNNGC	2 cut(s)	343, 545
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	810
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	121, 289, 505
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	359, 831
NlaIV	GGNNCC	3 cut(s)	100, 235, 839
NmeAIII	GCCGAG	2 cut(s)	243, 719
NmuCI	GTSAC	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	297
PdiI	GCCGGC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	431, 677, 816
PkrI	GCNGC	3 cut(s)	136, 139, 575
PleI	GAGTC	4 cut(s)	463, 723, 745, 832
PpsI	GAGTC	4 cut(s)	463, 723, 745, 832
PpuMI	RGGWCCY	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	309
Psp1406I	AACGTT	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	100, 235, 839
PspPI	GGNCC	1 cut(s)	99
PspPPI	RGGWCCY	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	351, 516
SatI	GCNGC	3 cut(s)	135, 138, 574
Sau3AI	GATC	3 cut(s)	121, 289, 505
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	4 cut(s)	463, 723, 745, 833
ScrFI	CCNGG	2 cut(s)	219, 810
SduI	GDGCHC	1 cut(s)	309
SinI	GGWCC	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	338, 471
SmoI	CTYRAG	2 cut(s)	338, 471
SpeI	ACTAGT	1 cut(s)	364
Sse9I	AATT	6 cut(s)	190, 377, 567, 767, 797, 803
SsiI	CCGC	5 cut(s)	5, 137, 476, 665, 783
SspMI	CTAG	2 cut(s)	107, 365
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	217, 808
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	4 cut(s)	17, 466, 674, 873
TaiI	ACGT	3 cut(s)	167, 173, 600
TaqI	TCGA	3 cut(s)	120, 504, 680
TasI	AATT	6 cut(s)	190, 377, 567, 767, 797, 803
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	3 cut(s)	431, 677, 816
Tru1I	TTAA	2 cut(s)	351, 516
Tru9I	TTAA	2 cut(s)	351, 516
TscAI	CASTG	4 cut(s)	203, 289, 712, 765
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	134, 573
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	370, 390
TspRI	CASTG	4 cut(s)	203, 289, 712, 765
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	5 cut(s)	190, 377, 567, 767, 797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	2 cut(s)	107, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.