Rmu_sc0001342.1_g000005

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001342.1
OG0012875
Physical Location & Seq
Forward (+)
16627 .. 18861
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001342.1_g000005.1.cds

Sequence Viewer

Length: 951 bp
atggcggttctgagccgcgttctgagactaagagcggcgggagtagaccgcttcgcagtccggagcttccggtcttcgtcttcgtcgtggcgaaattccgaaattgaccccaaggcggcgtcggcgtcgcagcagctcggggaaaaggcgcttcctttacagcgagacgtcaaggacagaaacgtccagtgggttttcctcggctgcccgggcgtcggcaaaggcacgcgggacgtcaaggacagaaacgtccagtgggttttcctcggctgcccgggcgtcggcaaaggcacctacgcgtctaaactctccactctgctcggcgtgcctcatattgcgaccggcgatctcgtccgcgacgagctttcctcttccggtccgctagctaagcagcttgaggaggttgtaaatcaaggcaaattggtttcggatgagattataataaacttgctgtccaagcgtcttgaagctagctcagctaagggtgaaactggctttattcttgatggtttccctcgcacaattcgacaggcggaaattttagagggagttactgaaattgacttggtagtcaacctaaagcttagggaagaggctttgcttgcaaagtgccttggaagaaggatttgcagtgagtgtggaggaaattacaatgttgcctgcattgacattaaagctgaaaaaggggaccctggcatgtacatggctccacttcttccacctccacattgtgcatcaaagcttatctcgcgatccgatgacactgaagaagttgttaagagacgactacgtatatataatgaaatgagtcaacctgtggaggagttctatcgcagtcggggaaaattgttagagtttgatcttcctggagggattccagaatcctggccaaagctgcttcgagctttaaatctggaagaccatgacgacaaagagtctgccgcagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

316

Amino Acids

34.74

Weight (kDa)

8.1

Isoelectric Point (pI)

56.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39270
fragaria_vesca FvH4_7g20530
malus_domestica MD01G1114300.v1.1 MD07G1182200.v1.1
prunus_persica Prupe.2G220900_v2.0.a1
pyrus_communis pycom01g14330 pycom07g17490
rosa_chinensis RchiOBHm_Chr1g0364421
rosa_laevigata RLG00000027481
rosa_multiflora Rmu_sc0001342.1_g000005
rosa_roxburghii Rroxscaffold_4G00292290
rosa_rugosa Rorug01G0316000 Rorug01G0316000
rosa_samantha Rh1AG324300 Rh1BG287000 Rh1CG303600 Rh1DG318500
rosa_wichuraiana Rw1G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
AasI GACNNNNNNGTC 3 cut(s) 182, 248, 569
AatII GACGTC 2 cut(s) 171, 237
AccB1I GGYRCC 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 45
AccII CGCG 5 cut(s) 18, 229, 299, 357, 751
AccIII TCCGGA 1 cut(s) 60
AclWI GGATC 1 cut(s) 747
AcoI YGGCCR 1 cut(s) 887
AcsI RAATTY 2 cut(s) 94, 537
AcuI CTGAAG 1 cut(s) 786
AcyI GRCGYC 6 cut(s) 119, 125, 168, 213, 234, 279
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 1 cut(s) 701
AfiI CCNNNNNNNGG 3 cut(s) 115, 215, 281
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 467
AhdI GACNNNNNGTC 1 cut(s) 934
AjnI CCWGG 3 cut(s) 691, 865, 884
Alw26I GTCTC 3 cut(s) 19, 159, 775
AlwI GGATC 1 cut(s) 747
Ama87I CYCGRG 3 cut(s) 137, 208, 274
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 1 cut(s) 887
ApeKI GCWGC 7 cut(s) 130, 133, 204, 270, 391, 895, 944
ApoI RAATTY 2 cut(s) 94, 537
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 377, 688
AsuC2I CCSGG 4 cut(s) 209, 210, 275, 276
AsuHPI GGTGA 1 cut(s) 497
AsuNHI GCTAGC 2 cut(s) 382, 470
AvaI CYCGRG 3 cut(s) 137, 208, 274
AvaII GGWCC 2 cut(s) 377, 688
BalI TGGCCA 1 cut(s) 889
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 3 cut(s) 66, 72, 924
BbvI GCAGC 6 cut(s) 142, 145, 191, 257, 403, 882
BccI CCATC 1 cut(s) 500
BciT130I CCWGG 3 cut(s) 693, 867, 886
BcnI CCSGG 4 cut(s) 209, 210, 275, 276
BcoDI GTCTC 3 cut(s) 19, 159, 775
BfaI CTAG 2 cut(s) 383, 471
BfoI RGCGCY 1 cut(s) 152
BlpI GCTNAGC 2 cut(s) 387, 475
Bme1390I CCNGG 7 cut(s) 209, 210, 275, 276, 693, 867, 886
Bme18I GGWCC 2 cut(s) 377, 688
BmeRI GACNNNNNGTC 1 cut(s) 934
BmeT110I CYCGRG 3 cut(s) 137, 208, 274
BmgT120I GGNCC 2 cut(s) 377, 688
BmiI GGNNCC 4 cut(s) 292, 689, 690, 708
BmrFI CCNGG 7 cut(s) 209, 210, 275, 276, 693, 867, 886
BmsI GCATC 1 cut(s) 743
BmtI GCTAGC 2 cut(s) 386, 474
BpiI GAAGAC 3 cut(s) 66, 72, 924
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 888
Bpu10I CCTNAGC 2 cut(s) 480, 584
Bpu1102I GCTNAGC 2 cut(s) 387, 475
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 4 cut(s) 209, 210, 275, 276
BsaAI YACGTR 1 cut(s) 791
BsaHI GRCGYC 6 cut(s) 119, 125, 168, 213, 234, 279
BsaJI CCNNGG 7 cut(s) 111, 199, 208, 265, 274, 613, 691
BsaWI WCCGGW 3 cut(s) 60, 69, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 215, 281
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 3 cut(s) 187, 253, 496
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 3 cut(s) 693, 867, 886
BseDI CCNNGG 7 cut(s) 111, 199, 208, 265, 274, 613, 691
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 3 cut(s) 115, 215, 281
BseMII CTCAG 2 cut(s) 14, 489
BseNI ACTGG 3 cut(s) 187, 253, 496
BseRI GAGGAG 2 cut(s) 413, 836
BseXI GCAGC 6 cut(s) 142, 145, 191, 257, 403, 882
Bsh1236I CGCG 5 cut(s) 18, 229, 299, 357, 751
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 889
BshNI GGYRCC 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 342
BsiHKCI CYCGRG 3 cut(s) 137, 208, 274
BsiSI CCGG 6 cut(s) 61, 70, 209, 275, 342, 375
BslFI GGGAC 2 cut(s) 245, 701
BslI CCNNNNNNNGG 3 cut(s) 115, 215, 281
BsmAI GTCTC 3 cut(s) 19, 159, 775
BsmBI CGTCTC 2 cut(s) 159, 775
BsmFI GGGAC 2 cut(s) 245, 701
BsnI GGCC 1 cut(s) 889
BsoBI CYCGRG 3 cut(s) 137, 208, 274
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 3 cut(s) 346, 752, 859
Bsp1720I GCTNAGC 2 cut(s) 387, 475
Bsp68I TCGCGA 1 cut(s) 751
BspANI GGCC 1 cut(s) 889
BspCNI CTCAG 2 cut(s) 15, 488
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 5 cut(s) 18, 229, 299, 357, 751
BspLI GGNNCC 4 cut(s) 292, 689, 690, 708
BspOI GCTAGC 2 cut(s) 386, 474
BspPI GGATC 1 cut(s) 747
BspT107I GGYRCC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 341
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 3 cut(s) 187, 253, 496
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 7 cut(s) 111, 199, 208, 265, 274, 613, 691
BssMI GATC 3 cut(s) 346, 752, 859
BssNI GRCGYC 6 cut(s) 119, 125, 168, 213, 234, 279
BssT1I CCWWGG 2 cut(s) 111, 613
Bst2UI CCWGG 3 cut(s) 693, 867, 886
Bst6I CTCTTC 2 cut(s) 376, 585
BstACI GRCGYC 6 cut(s) 119, 125, 168, 213, 234, 279
BstAUI TGTACA 1 cut(s) 699
BstBAI YACGTR 1 cut(s) 791
BstC8I GCNNGC 6 cut(s) 227, 326, 384, 472, 603, 661
BstDEI CTNAG 7 cut(s) 11, 23, 29, 387, 475, 480, 584
BstF5I GGATG 1 cut(s) 436
BstFNI CGCG 5 cut(s) 18, 229, 299, 357, 751
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 349, 755, 862
BstMAI GTCTC 3 cut(s) 19, 159, 775
BstMBI GATC 3 cut(s) 346, 752, 859
BstMCI CGRYCG 1 cut(s) 342
BstNI CCWGG 3 cut(s) 693, 867, 886
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 7 cut(s) 207, 208, 273, 274, 691, 865, 884
BstSNI TACGTA 1 cut(s) 791
BstUI CGCG 5 cut(s) 18, 229, 299, 357, 751
BstV1I GCAGC 6 cut(s) 142, 145, 191, 257, 403, 882
BstV2I GAAGAC 3 cut(s) 66, 72, 924
BstXI CCANNNNNNTGG 1 cut(s) 885
BsuRI GGCC 1 cut(s) 889
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 4 cut(s) 194, 260, 637, 762
BtuMI TCGCGA 1 cut(s) 751
Cac8I GCNNGC 6 cut(s) 227, 326, 384, 472, 603, 661
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 377, 688
Cfr9I CCCGGG 2 cut(s) 208, 274
CpoI CGGWCCG 1 cut(s) 377
CseI GACGC 6 cut(s) 108, 114, 202, 268, 288, 449
Csp6I GTAC 1 cut(s) 700
CspI CGGWCCG 1 cut(s) 377
CviAII CATG 4 cut(s) 697, 703, 923, 948
CviQI GTAC 1 cut(s) 700
DdeI CTNAG 7 cut(s) 11, 23, 29, 387, 475, 480, 584
DpnI GATC 3 cut(s) 348, 754, 861
DpnII GATC 3 cut(s) 346, 752, 859
DraI TTTAAA 1 cut(s) 909
DraIII CACNNNGTG 1 cut(s) 731
DrdI GACNNNNNNGTC 3 cut(s) 182, 248, 569
DriI GACNNNNNGTC 1 cut(s) 934
DseDI GACNNNNNNGTC 3 cut(s) 182, 248, 569
EaeI YGGCCR 1 cut(s) 887
Eam1104I CTCTTC 2 cut(s) 376, 585
Eam1105I GACNNNNNGTC 1 cut(s) 934
EarI CTCTTC 2 cut(s) 376, 585
EciI GGCGGA 1 cut(s) 548
Eco105I TACGTA 1 cut(s) 791
Eco130I CCWWGG 2 cut(s) 111, 613
Eco47I GGWCC 2 cut(s) 377, 688
Eco57I CTGAAG 1 cut(s) 786
Eco88I CYCGRG 3 cut(s) 137, 208, 274
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 3 cut(s) 691, 865, 884
EcoT14I CCWWGG 2 cut(s) 111, 613
ErhI CCWWGG 2 cut(s) 111, 613
Esp3I CGTCTC 2 cut(s) 159, 775
FaeI CATG 4 cut(s) 700, 706, 926, 951
FaiI YATR 9 cut(s) 333, 440, 698, 704, 794, 796, 798, 924, 949
FaqI GGGAC 2 cut(s) 245, 701
FatI CATG 4 cut(s) 696, 702, 922, 947
FauI CCCGC 2 cut(s) 31, 222
FblI GTMKAC 1 cut(s) 45
FokI GGATG 1 cut(s) 443
FspBI CTAG 2 cut(s) 383, 471
GlaI GCGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 888
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 889
HapII CCGG 6 cut(s) 61, 70, 209, 275, 342, 375
HgaI GACGC 6 cut(s) 108, 114, 202, 268, 288, 449
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 6 cut(s) 119, 125, 168, 213, 234, 279
Hin1II CATG 4 cut(s) 700, 706, 926, 951
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 2 cut(s) 574, 812
HindII GTYRAC 2 cut(s) 574, 812
HindIII AAGCTT 2 cut(s) 581, 740
HinfI GANTC 4 cut(s) 808, 874, 881, 935
HpaII CCGG 6 cut(s) 61, 70, 209, 275, 342, 375
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 3 cut(s) 46, 574, 812
Hpy188I TCNGA 5 cut(s) 12, 24, 100, 430, 757
Hpy188III TCNNGA 6 cut(s) 61, 464, 503, 750, 878, 914
Hpy8I GTNNAC 3 cut(s) 46, 574, 812
Hpy99I CGWCG 6 cut(s) 88, 124, 130, 218, 284, 362
HpyAV CCTTC 1 cut(s) 615
HpyCH4IV ACGT 5 cut(s) 168, 183, 234, 249, 790
HpyCH4V TGCA 4 cut(s) 605, 630, 663, 734
HpyF3I CTNAG 7 cut(s) 11, 23, 29, 387, 475, 480, 584
HpySE526I ACGT 5 cut(s) 168, 183, 234, 249, 790
Hsp92I GRCGYC 6 cut(s) 119, 125, 168, 213, 234, 279
Hsp92II CATG 4 cut(s) 700, 706, 926, 951
HspAI GCGC 1 cut(s) 149
KflI GGGWCCC 1 cut(s) 688
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 346, 752, 859
LmnI GCTCC 2 cut(s) 63, 712
Lsp1109I GCAGC 6 cut(s) 142, 145, 191, 257, 403, 882
LweI GCATC 1 cut(s) 743
MaeI CTAG 2 cut(s) 383, 471
MaeII ACGT 5 cut(s) 168, 183, 234, 249, 790
MaeIII GTNAC 1 cut(s) 550
MalI GATC 3 cut(s) 348, 754, 861
MbiI CCGCTC 1 cut(s) 35
MboI GATC 3 cut(s) 346, 752, 859
MboII GAAGA 9 cut(s) 66, 72, 363, 602, 630, 707, 779, 854, 929
MlsI TGGCCA 1 cut(s) 889
MluCI AATT 8 cut(s) 94, 102, 419, 522, 537, 558, 646, 845
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 889
MlyI GAGTC 2 cut(s) 817, 944
Mox20I TGGCCA 1 cut(s) 889
MroI TCCGGA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 889
MseI TTAA 3 cut(s) 672, 777, 908
MslI CAYNNNNRTG 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 889
MspI CCGG 6 cut(s) 61, 70, 209, 275, 342, 375
MspR9I CCNGG 7 cut(s) 209, 210, 275, 276, 693, 867, 886
MvaI CCWGG 3 cut(s) 693, 867, 886
MvnI CGCG 5 cut(s) 18, 229, 299, 357, 751
NciI CCSGG 4 cut(s) 209, 210, 275, 276
NdeII GATC 3 cut(s) 346, 752, 859
NheI GCTAGC 2 cut(s) 382, 470
NlaIII CATG 4 cut(s) 700, 706, 926, 951
NlaIV GGNNCC 4 cut(s) 292, 689, 690, 708
NmeAIII GCCGAG 3 cut(s) 180, 246, 300
NruI TCGCGA 1 cut(s) 751
NspI RCATGY 1 cut(s) 700
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 357, 523
PfeI GAWTC 2 cut(s) 874, 881
PfoI TCCNGGA 1 cut(s) 865
PleI GAGTC 2 cut(s) 816, 943
PpsI GAGTC 2 cut(s) 816, 943
Ppu21I YACGTR 1 cut(s) 791
PpuMI RGGWCCY 1 cut(s) 688
PsiI TTATAA 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 3 cut(s) 691, 865, 884
PspGI CCWGG 3 cut(s) 691, 865, 884
PspN4I GGNNCC 4 cut(s) 292, 689, 690, 708
PspPI GGNCC 2 cut(s) 377, 688
PspPPI RGGWCCY 1 cut(s) 688
RruI TCGCGA 1 cut(s) 751
RsaI GTAC 1 cut(s) 701
RsaNI GTAC 1 cut(s) 700
RseI CAYNNNNRTG 1 cut(s) 701
Rsr2I CGGWCCG 1 cut(s) 377
RsrII CGGWCCG 1 cut(s) 377
SaqAI TTAA 3 cut(s) 672, 777, 908
Sau3AI GATC 3 cut(s) 346, 752, 859
Sau96I GGNCC 2 cut(s) 377, 688
SchI GAGTC 2 cut(s) 817, 944
ScrFI CCNGG 7 cut(s) 209, 210, 275, 276, 693, 867, 886
SfaNI GCATC 1 cut(s) 743
SinI GGWCC 2 cut(s) 377, 688
SmaI CCCGGG 2 cut(s) 210, 276
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SnaBI TACGTA 1 cut(s) 791
SrfI GCCCGGGC 2 cut(s) 210, 276
Sse9I AATT 8 cut(s) 94, 102, 419, 522, 537, 558, 646, 845
SspMI CTAG 2 cut(s) 383, 471
StyD4I CCNGG 7 cut(s) 207, 208, 273, 274, 691, 865, 884
StyI CCWWGG 2 cut(s) 111, 613
TaiI ACGT 5 cut(s) 171, 186, 237, 252, 793
TaqI TCGA 2 cut(s) 526, 901
TasI AATT 8 cut(s) 94, 102, 419, 522, 537, 558, 646, 845
TatI WGTACW 1 cut(s) 699
TauI GCSGC 4 cut(s) 18, 38, 119, 944
TfiI GAWTC 2 cut(s) 874, 881
Tru1I TTAA 3 cut(s) 672, 777, 908
Tru9I TTAA 3 cut(s) 672, 777, 908
TscAI CASTG 4 cut(s) 194, 260, 637, 769
TseI GCWGC 7 cut(s) 130, 133, 204, 270, 391, 895, 944
TspDTI ATGAA 1 cut(s) 816
TspMI CCCGGG 2 cut(s) 208, 274
TspRI CASTG 4 cut(s) 194, 260, 637, 769
VpaK11BI GGWCC 2 cut(s) 377, 688
XapI RAATTY 2 cut(s) 94, 537
XceI RCATGY 1 cut(s) 700
XmaI CCCGGG 2 cut(s) 208, 274
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 383, 471
ZraI GACGTC 2 cut(s) 169, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.