RLG00000027481

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012875
Physical Location & Seq
Reverse (-)
12079724 .. 12081885
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027481

Sequence Viewer

Length: 882 bp
ATGGCGGTTCTGAGCCGCGTTCTGAGACTAAGAGCGGCGGGAGTAGACCGCTTCGTAGTCCGGAGCTTCCGGTCTTCGTCTTCGTGGTGGCGAAATTCCGAAATTGACCCCAAGGCGGCGGCGACGCAGCAGCTCGGGGAAAAGGCGCTTCCTTTACAGCGAGACGTCAAGGACAGAAATGTCCAGTGGGTTTTCCTCGGCTGCCCGGGCGTCGGGAAAGGCACCTACGCGTCTAAACTCTCCACTCTGCTCGGCGTGCCTCATATTGCGACCGGCGATCTCGTCCGCGACGAGCTTTCCTCTTCCGGTCCGCTAGCTAAGCAGCTTGAGGAGGTTGTAAATCAAGGCAAATTGGTTTCGGATGAGATTATAATAAACTTGCTGTCCAAGCGTCTTGAAGCTAGCTCAGCTAAGGGTGAAACTGGCTTTATTCTTGATGGTTTCCCTCGCACAATTCGACAGGCGGAAATTTTAGAGGGAGTTACTGAAATTGACTTGGTAGTCAACCTAAAGCTTAGGGAAGAGGCTTTGCTTGCAAAGTGCCTTGGAAGAAGGATTTGCAGTGAGTGTGGAGGAAATTACAATGTTGCCTGCATTGACATTAAAGCTGAAGAAGGGAACCCTGGCATGTACATGGCTCCACTTCTTCCACCTCCACATTGTGCATCAAAGCTTATCTCGCGATCCGATGACACTGAAGAAGTTGTTAAGAGACGACTACGTATATATAATGAAAAGAGTCAACCTGTGGAGGAGTTCTACCGCAGTCGGGGAAAATTGTTAGAGTTTGATCTTCCAGGAGGGATTCCAGAATCTTGGCCAAAGCTGCTTCGAGCTTTAAATCTGGTAGACCATGATGACAAACAGTCTGCTGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

294

Amino Acids

32.35

Weight (kDa)

8.16

Isoelectric Point (pI)

59.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 66 - 258 3.7e-39 Adenylate kinase
AAA_17 PF13207 66 - 185 2.1e-21 AAA domain
AAA_18 PF13238 66 - 184 2.2e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39270
fragaria_vesca FvH4_7g20530
malus_domestica MD01G1114300.v1.1 MD07G1182200.v1.1
prunus_persica Prupe.2G220900_v2.0.a1
pyrus_communis pycom01g14330 pycom07g17490
rosa_chinensis RchiOBHm_Chr1g0364421
rosa_laevigata RLG00000027481
rosa_multiflora Rmu_sc0001342.1_g000005
rosa_roxburghii Rroxscaffold_4G00292290
rosa_rugosa Rorug01G0316000 Rorug01G0316000
rosa_samantha Rh1AG324300 Rh1BG287000 Rh1CG303600 Rh1DG318500
rosa_wichuraiana Rw1G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
AasI GACNNNNNNGTC 2 cut(s) 179, 500
AatII GACGTC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 35
AccI GTMKAC 2 cut(s) 45, 849
AccII CGCG 4 cut(s) 18, 230, 288, 682
AccIII TCCGGA 1 cut(s) 60
AclWI GGATC 1 cut(s) 678
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 2 cut(s) 94, 468
AcuI CTGAAG 2 cut(s) 630, 717
AcyI GRCGYC 2 cut(s) 165, 210
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 3 cut(s) 115, 212, 769
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 1 cut(s) 398
AhdI GACNNNNNGTC 1 cut(s) 865
AjnI CCWGG 2 cut(s) 622, 796
Alw26I GTCTC 3 cut(s) 19, 156, 706
AlwI GGATC 1 cut(s) 678
Ama87I CYCGRG 2 cut(s) 134, 205
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 1 cut(s) 818
ApeKI GCWGC 7 cut(s) 127, 130, 201, 322, 826, 872, 875
ApoI RAATTY 2 cut(s) 94, 468
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 2 cut(s) 206, 207
AsuHPI GGTGA 1 cut(s) 428
AsuNHI GCTAGC 2 cut(s) 313, 401
AvaI CYCGRG 2 cut(s) 134, 205
AvaII GGWCC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 820
BanI GGYRCC 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 66, 72
BbvI GCAGC 6 cut(s) 139, 142, 188, 334, 813, 859
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 2 cut(s) 624, 798
BcnI CCSGG 2 cut(s) 206, 207
BcoDI GTCTC 3 cut(s) 19, 156, 706
BfaI CTAG 2 cut(s) 314, 402
BfmI CTRYAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 149
BlpI GCTNAGC 2 cut(s) 318, 406
Bme1390I CCNGG 4 cut(s) 206, 207, 624, 798
Bme18I GGWCC 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 865
BmeT110I CYCGRG 2 cut(s) 134, 205
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 3 cut(s) 223, 620, 639
BmrFI CCNGG 4 cut(s) 206, 207, 624, 798
BmsI GCATC 1 cut(s) 674
BmtI GCTAGC 2 cut(s) 317, 405
BpiI GAAGAC 2 cut(s) 66, 72
BplI GAGNNNNNCTC 2 cut(s) 284, 316
Bpu10I CCTNAGC 2 cut(s) 411, 515
Bpu1102I GCTNAGC 2 cut(s) 318, 406
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 206, 207
BsaAI YACGTR 1 cut(s) 722
BsaHI GRCGYC 2 cut(s) 165, 210
BsaJI CCNNGG 5 cut(s) 111, 196, 205, 544, 622
BsaWI WCCGGW 3 cut(s) 60, 69, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 212, 769
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 2 cut(s) 184, 427
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 2 cut(s) 624, 798
BseDI CCNNGG 5 cut(s) 111, 196, 205, 544, 622
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 3 cut(s) 115, 212, 769
BseMII CTCAG 2 cut(s) 14, 420
BseNI ACTGG 2 cut(s) 184, 427
BseRI GAGGAG 2 cut(s) 344, 767
BseXI GCAGC 6 cut(s) 139, 142, 188, 334, 813, 859
Bsh1236I CGCG 4 cut(s) 18, 230, 288, 682
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 820
BshNI GGYRCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 273
BsiHKCI CYCGRG 2 cut(s) 134, 205
BsiSI CCGG 5 cut(s) 61, 70, 206, 273, 306
BslI CCNNNNNNNGG 3 cut(s) 115, 212, 769
BsmAI GTCTC 3 cut(s) 19, 156, 706
BsmBI CGTCTC 2 cut(s) 156, 706
BsnI GGCC 1 cut(s) 820
BsoBI CYCGRG 2 cut(s) 134, 205
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 3 cut(s) 277, 683, 790
Bsp1720I GCTNAGC 2 cut(s) 318, 406
Bsp68I TCGCGA 1 cut(s) 682
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 2 cut(s) 15, 419
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 4 cut(s) 18, 230, 288, 682
BspLI GGNNCC 3 cut(s) 223, 620, 639
BspMAI CTGCAG 1 cut(s) 877
BspOI GCTAGC 2 cut(s) 317, 405
BspPI GGATC 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 272
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 2 cut(s) 184, 427
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 5 cut(s) 111, 196, 205, 544, 622
BssMI GATC 3 cut(s) 277, 683, 790
BssNI GRCGYC 2 cut(s) 165, 210
BssT1I CCWWGG 2 cut(s) 111, 544
Bst2UI CCWGG 2 cut(s) 624, 798
Bst4CI ACNGT 1 cut(s) 867
Bst6I CTCTTC 2 cut(s) 307, 516
BstACI GRCGYC 2 cut(s) 165, 210
BstAUI TGTACA 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 722
BstC8I GCNNGC 5 cut(s) 257, 315, 403, 534, 592
BstDEI CTNAG 7 cut(s) 11, 23, 29, 318, 406, 411, 515
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 4 cut(s) 18, 230, 288, 682
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 3 cut(s) 280, 686, 793
BstMAI GTCTC 3 cut(s) 19, 156, 706
BstMBI GATC 3 cut(s) 277, 683, 790
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 8 cut(s) 207, 256, 319, 388, 407, 533, 679, 826
BstNI CCWGG 2 cut(s) 624, 798
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 4 cut(s) 204, 205, 622, 796
BstSFI CTRYAG 1 cut(s) 873
BstSNI TACGTA 1 cut(s) 722
BstUI CGCG 4 cut(s) 18, 230, 288, 682
BstV1I GCAGC 6 cut(s) 139, 142, 188, 334, 813, 859
BstV2I GAAGAC 2 cut(s) 66, 72
BstXI CCANNNNNNTGG 1 cut(s) 816
BsuRI GGCC 1 cut(s) 820
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 3 cut(s) 191, 568, 693
BtuMI TCGCGA 1 cut(s) 682
Cac8I GCNNGC 5 cut(s) 257, 315, 403, 534, 592
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 308
Cfr9I CCCGGG 1 cut(s) 205
CpoI CGGWCCG 1 cut(s) 308
CseI GACGC 4 cut(s) 133, 199, 219, 380
Csp6I GTAC 1 cut(s) 631
CspI CGGWCCG 1 cut(s) 308
CviAII CATG 4 cut(s) 628, 634, 854, 879
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 7 cut(s) 11, 23, 29, 318, 406, 411, 515
DpnI GATC 3 cut(s) 279, 685, 792
DpnII GATC 3 cut(s) 277, 683, 790
DraI TTTAAA 1 cut(s) 840
DraIII CACNNNGTG 1 cut(s) 662
DrdI GACNNNNNNGTC 2 cut(s) 179, 500
DriI GACNNNNNGTC 1 cut(s) 865
DseDI GACNNNNNNGTC 2 cut(s) 179, 500
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 2 cut(s) 307, 516
Eam1105I GACNNNNNGTC 1 cut(s) 865
EarI CTCTTC 2 cut(s) 307, 516
EciI GGCGGA 1 cut(s) 479
Eco105I TACGTA 1 cut(s) 722
Eco130I CCWWGG 2 cut(s) 111, 544
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 2 cut(s) 630, 717
Eco88I CYCGRG 2 cut(s) 134, 205
EcoRII CCWGG 2 cut(s) 622, 796
EcoT14I CCWWGG 2 cut(s) 111, 544
ErhI CCWWGG 2 cut(s) 111, 544
Esp3I CGTCTC 2 cut(s) 156, 706
FaeI CATG 4 cut(s) 631, 637, 857, 882
FaiI YATR 9 cut(s) 264, 371, 629, 635, 725, 727, 729, 855, 880
FatI CATG 4 cut(s) 627, 633, 853, 878
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 2 cut(s) 45, 849
FokI GGATG 1 cut(s) 374
FspBI CTAG 2 cut(s) 314, 402
GlaI GCGC 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 1 cut(s) 820
HapII CCGG 5 cut(s) 61, 70, 206, 273, 306
HgaI GACGC 4 cut(s) 133, 199, 219, 380
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 2 cut(s) 165, 210
Hin1II CATG 4 cut(s) 631, 637, 857, 882
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 2 cut(s) 505, 743
HindII GTYRAC 2 cut(s) 505, 743
HindIII AAGCTT 2 cut(s) 512, 671
HinfI GANTC 3 cut(s) 739, 805, 812
HpaII CCGG 5 cut(s) 61, 70, 206, 273, 306
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 4 cut(s) 46, 505, 743, 850
Hpy188I TCNGA 5 cut(s) 12, 24, 100, 361, 688
Hpy188III TCNNGA 6 cut(s) 61, 214, 395, 434, 681, 809
Hpy8I GTNNAC 4 cut(s) 46, 505, 743, 850
Hpy99I CGWCG 3 cut(s) 127, 215, 293
HpyAV CCTTC 2 cut(s) 546, 608
HpyCH4III ACNGT 1 cut(s) 867
HpyCH4IV ACGT 2 cut(s) 165, 721
HpyCH4V TGCA 5 cut(s) 536, 561, 594, 665, 875
HpyF10VI GCNNNNNNNGC 8 cut(s) 207, 256, 319, 388, 407, 533, 679, 826
HpyF3I CTNAG 7 cut(s) 11, 23, 29, 318, 406, 411, 515
HpySE526I ACGT 2 cut(s) 165, 721
Hsp92I GRCGYC 2 cut(s) 165, 210
Hsp92II CATG 4 cut(s) 631, 637, 857, 882
HspAI GCGC 1 cut(s) 146
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 277, 683, 790
LmnI GCTCC 2 cut(s) 63, 643
Lsp1109I GCAGC 6 cut(s) 139, 142, 188, 334, 813, 859
LweI GCATC 1 cut(s) 674
MaeI CTAG 2 cut(s) 314, 402
MaeII ACGT 2 cut(s) 165, 721
MaeIII GTNAC 1 cut(s) 481
MalI GATC 3 cut(s) 279, 685, 792
MbiI CCGCTC 1 cut(s) 35
MboI GATC 3 cut(s) 277, 683, 790
MboII GAAGA 9 cut(s) 66, 72, 294, 533, 561, 623, 638, 710, 785
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 8 cut(s) 94, 102, 350, 453, 468, 489, 577, 776
MluI ACGCGT 1 cut(s) 228
MluNI TGGCCA 1 cut(s) 820
MlyI GAGTC 1 cut(s) 748
Mox20I TGGCCA 1 cut(s) 820
MroI TCCGGA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 820
MseI TTAA 3 cut(s) 603, 708, 839
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 820
MspI CCGG 5 cut(s) 61, 70, 206, 273, 306
MspR9I CCNGG 4 cut(s) 206, 207, 624, 798
MvaI CCWGG 2 cut(s) 624, 798
MvnI CGCG 4 cut(s) 18, 230, 288, 682
MwoI GCNNNNNNNGC 8 cut(s) 207, 256, 319, 388, 407, 533, 679, 826
NciI CCSGG 2 cut(s) 206, 207
NdeII GATC 3 cut(s) 277, 683, 790
NheI GCTAGC 2 cut(s) 313, 401
NlaIII CATG 4 cut(s) 631, 637, 857, 882
NlaIV GGNNCC 3 cut(s) 223, 620, 639
NmeAIII GCCGAG 2 cut(s) 177, 231
NruI TCGCGA 1 cut(s) 682
NspI RCATGY 1 cut(s) 631
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 454
PfeI GAWTC 2 cut(s) 805, 812
PfoI TCCNGGA 1 cut(s) 796
PleI GAGTC 1 cut(s) 747
PpsI GAGTC 1 cut(s) 747
Ppu21I YACGTR 1 cut(s) 722
PsiI TTATAA 1 cut(s) 371
Psp6I CCWGG 2 cut(s) 622, 796
PspGI CCWGG 2 cut(s) 622, 796
PspN4I GGNNCC 3 cut(s) 223, 620, 639
PspPI GGNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 877
RruI TCGCGA 1 cut(s) 682
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
RseI CAYNNNNRTG 1 cut(s) 632
Rsr2I CGGWCCG 1 cut(s) 308
RsrII CGGWCCG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 603, 708, 839
Sau3AI GATC 3 cut(s) 277, 683, 790
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 4 cut(s) 206, 207, 624, 798
SfaNI GCATC 1 cut(s) 674
SfcI CTRYAG 1 cut(s) 873
SinI GGWCC 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SnaBI TACGTA 1 cut(s) 722
SrfI GCCCGGGC 1 cut(s) 207
Sse9I AATT 8 cut(s) 94, 102, 350, 453, 468, 489, 577, 776
SspMI CTAG 2 cut(s) 314, 402
StyD4I CCNGG 4 cut(s) 204, 205, 622, 796
StyI CCWWGG 2 cut(s) 111, 544
TaaI ACNGT 1 cut(s) 867
TaiI ACGT 2 cut(s) 168, 724
TaqI TCGA 2 cut(s) 457, 832
TasI AATT 8 cut(s) 94, 102, 350, 453, 468, 489, 577, 776
TatI WGTACW 1 cut(s) 630
TauI GCSGC 4 cut(s) 18, 38, 119, 122
TfiI GAWTC 2 cut(s) 805, 812
Tru1I TTAA 3 cut(s) 603, 708, 839
Tru9I TTAA 3 cut(s) 603, 708, 839
TscAI CASTG 3 cut(s) 191, 568, 700
TseI GCWGC 7 cut(s) 127, 130, 201, 322, 826, 872, 875
TspDTI ATGAA 1 cut(s) 747
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 3 cut(s) 191, 568, 700
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 2 cut(s) 94, 468
XceI RCATGY 1 cut(s) 631
XmaI CCCGGG 1 cut(s) 205
XmiI GTMKAC 2 cut(s) 45, 849
XspI CTAG 2 cut(s) 314, 402
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.