Rh1BG287000

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012875
Physical Location & Seq
Forward (+)
42273515 .. 42277051
3537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG287000.1

Sequence Viewer

Length: 786 bp
ATGGCGGTTCTGAGCCGCGTTCTGAGATTAAGAACGGCGGGAGTAGACCGCTTCGCAGTCCGGAGCTTCCGGTCTTCGTCTTCGTCGTGGCGAAATTCCGAAATTGACCCCAAGGCGGCGGCGGCGTCGCAGCAGCTCGGGGAAAAGGCGCTTCCTTTACAGCGAGACGTCAAGGACAGAAATGTCCAGTGGGTTTTCCTCGGCTGCCCGGGCGTCGGCAAAGGCACCTACGCGTCTAAACTCTCGACTCTGCTCGGCGTGCCTCATATTGCGACCGGCGATCTCGTCCGCGACGAGCTTTCCTCTTCCGGTCCGCTCGCCAAGCAGCTTGAGGAGGTTGTAAATCAAGGAAAATTGGTTTCGGATGAGATTATAATAAACTTGCTGTCCAAGCGTCTTGAAGCTAGCTCAGCTAAGGGTGAAACTGGCTTTATTCTTGATGGTTTCCCTCGCACAATTCGACAGGCGGAAATTTTAGAGGGAGTTACTGAAATTGACTTGGTAATCAACCTAAAGCTTCGGGAAGAGGCTTTGCTTGCCAAGTGCCTTGGAAGAAGGATTTGCAGTGAGTGTGGAGGAAATTACAATGTTTCCAGCATTGATATTAAAGCTGAGGAAGGGGACCCTGGCATGTACATGGCTCCACTTCTTCCACCTCCACATTGTGCATCAAAGCTTATCTCGCGATCCGATGACACTGAAGAAGTTGTTAAGAGACGACTACGTATATATAATGAAATGGTATTGTTTCCAAGTTCTCATCCATCATTCCAAGGAAGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

261

Amino Acids

28.53

Weight (kDa)

8.25

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 67 - 247 1e-35 Adenylate kinase
AAA_17 PF13207 67 - 186 1.2e-21 AAA domain
AAA_18 PF13238 67 - 185 1.9e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39270
fragaria_vesca FvH4_7g20530
malus_domestica MD01G1114300.v1.1 MD07G1182200.v1.1
prunus_persica Prupe.2G220900_v2.0.a1
pyrus_communis pycom01g14330 pycom07g17490
rosa_chinensis RchiOBHm_Chr1g0364421
rosa_laevigata RLG00000027481
rosa_multiflora Rmu_sc0001342.1_g000005
rosa_roxburghii Rroxscaffold_4G00292290
rosa_rugosa Rorug01G0316000 Rorug01G0316000
rosa_samantha Rh1AG324300 Rh1BG287000 Rh1CG303600 Rh1DG318500
rosa_wichuraiana Rw1G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 45
AccII CGCG 4 cut(s) 18, 233, 291, 685
AccIII TCCGGA 1 cut(s) 60
AclWI GGATC 1 cut(s) 681
AcsI RAATTY 2 cut(s) 94, 471
AcuI CTGAAG 1 cut(s) 720
AcyI GRCGYC 3 cut(s) 125, 168, 213
AdeI CACNNNGTG 1 cut(s) 665
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 2 cut(s) 115, 215
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 159, 709
AlwI GGATC 1 cut(s) 681
Ama87I CYCGRG 2 cut(s) 137, 208
Aor13HI TCCGGA 1 cut(s) 60
ApeKI GCWGC 4 cut(s) 130, 133, 204, 325
ApoI RAATTY 2 cut(s) 94, 471
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 311, 622
AsuC2I CCSGG 2 cut(s) 209, 210
AsuHPI GGTGA 1 cut(s) 431
AsuNHI GCTAGC 1 cut(s) 404
AvaI CYCGRG 2 cut(s) 137, 208
AvaII GGWCC 2 cut(s) 311, 622
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 66, 72
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 4 cut(s) 142, 145, 191, 337
BccI CCATC 2 cut(s) 434, 772
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 627
BcnI CCSGG 2 cut(s) 209, 210
BcoDI GTCTC 2 cut(s) 159, 709
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 8 cut(s) 16, 117, 120, 123, 131, 134, 205, 326
BlpI GCTNAGC 1 cut(s) 409
BlsI GCNGC 8 cut(s) 17, 118, 121, 124, 132, 135, 206, 327
Bme1390I CCNGG 3 cut(s) 209, 210, 627
Bme18I GGWCC 2 cut(s) 311, 622
BmeT110I CYCGRG 2 cut(s) 137, 208
BmgT120I GGNCC 2 cut(s) 311, 622
BmiI GGNNCC 4 cut(s) 226, 623, 624, 642
BmrFI CCNGG 3 cut(s) 209, 210, 627
BmsI GCATC 1 cut(s) 677
BmtI GCTAGC 1 cut(s) 408
BpiI GAAGAC 2 cut(s) 66, 72
BplI GAGNNNNNCTC 2 cut(s) 287, 319
Bpu10I CCTNAGC 2 cut(s) 414, 612
Bpu1102I GCTNAGC 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 209, 210
BsaAI YACGTR 1 cut(s) 725
BsaHI GRCGYC 3 cut(s) 125, 168, 213
BsaJI CCNNGG 6 cut(s) 111, 199, 208, 547, 625, 772
BsaWI WCCGGW 3 cut(s) 60, 69, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 215
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 187, 430
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 6 cut(s) 111, 199, 208, 547, 625, 772
BseGI GGATG 2 cut(s) 370, 760
BseLI CCNNNNNNNGG 2 cut(s) 115, 215
BseMII CTCAG 3 cut(s) 14, 423, 603
BseNI ACTGG 2 cut(s) 187, 430
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 4 cut(s) 142, 145, 191, 337
Bsh1236I CGCG 4 cut(s) 18, 233, 291, 685
Bsh1285I CGRYCG 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 276
BsiHKCI CYCGRG 2 cut(s) 137, 208
BsiSI CCGG 5 cut(s) 61, 70, 209, 276, 309
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 115, 215
BsmAI GTCTC 2 cut(s) 159, 709
BsmBI CGTCTC 2 cut(s) 159, 709
BsmFI GGGAC 1 cut(s) 635
BsoBI CYCGRG 2 cut(s) 137, 208
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 2 cut(s) 280, 686
Bsp1720I GCTNAGC 1 cut(s) 409
Bsp68I TCGCGA 1 cut(s) 685
BspCNI CTCAG 3 cut(s) 15, 422, 604
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 4 cut(s) 18, 233, 291, 685
BspLI GGNNCC 4 cut(s) 226, 623, 624, 642
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 2 cut(s) 187, 430
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 6 cut(s) 111, 199, 208, 547, 625, 772
BssMI GATC 2 cut(s) 280, 686
BssNI GRCGYC 3 cut(s) 125, 168, 213
BssT1I CCWWGG 3 cut(s) 111, 547, 772
Bst2UI CCWGG 1 cut(s) 627
Bst6I CTCTTC 2 cut(s) 310, 519
BstACI GRCGYC 3 cut(s) 125, 168, 213
BstAUI TGTACA 1 cut(s) 633
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 260, 318, 406, 537
BstDEI CTNAG 5 cut(s) 11, 23, 409, 414, 612
BstF5I GGATG 2 cut(s) 370, 760
BstFNI CGCG 4 cut(s) 18, 233, 291, 685
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 283, 689
BstMAI GTCTC 2 cut(s) 159, 709
BstMBI GATC 2 cut(s) 280, 686
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 8 cut(s) 122, 210, 259, 322, 391, 410, 536, 682
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 3 cut(s) 207, 208, 625
BstSNI TACGTA 1 cut(s) 725
BstUI CGCG 4 cut(s) 18, 233, 291, 685
BstV1I GCAGC 4 cut(s) 142, 145, 191, 337
BstV2I GAAGAC 2 cut(s) 66, 72
BtsCI GGATG 2 cut(s) 370, 760
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 3 cut(s) 194, 571, 696
BtuMI TCGCGA 1 cut(s) 685
Cac8I GCNNGC 4 cut(s) 260, 318, 406, 537
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 311, 622
Cfr9I CCCGGG 1 cut(s) 208
CpoI CGGWCCG 1 cut(s) 311
CseI GACGC 4 cut(s) 114, 202, 222, 383
Csp6I GTAC 1 cut(s) 634
CspI CGGWCCG 1 cut(s) 311
CviAII CATG 2 cut(s) 631, 637
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 5 cut(s) 11, 23, 409, 414, 612
DpnI GATC 2 cut(s) 282, 688
DpnII GATC 2 cut(s) 280, 686
DraIII CACNNNGTG 1 cut(s) 665
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 310, 519
EarI CTCTTC 2 cut(s) 310, 519
EciI GGCGGA 1 cut(s) 482
Eco105I TACGTA 1 cut(s) 725
Eco130I CCWWGG 3 cut(s) 111, 547, 772
Eco47I GGWCC 2 cut(s) 311, 622
Eco57I CTGAAG 1 cut(s) 720
Eco88I CYCGRG 2 cut(s) 137, 208
EcoO109I RGGNCCY 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 3 cut(s) 111, 547, 772
ErhI CCWWGG 3 cut(s) 111, 547, 772
Esp3I CGTCTC 2 cut(s) 159, 709
FaeI CATG 2 cut(s) 634, 640
FaiI YATR 7 cut(s) 267, 374, 632, 638, 728, 730, 732
FaqI GGGAC 1 cut(s) 635
FatI CATG 2 cut(s) 630, 636
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 8 cut(s) 16, 117, 120, 123, 131, 134, 205, 326
FokI GGATG 2 cut(s) 377, 747
Fsp4HI GCNGC 8 cut(s) 16, 117, 120, 123, 131, 134, 205, 326
FspBI CTAG 1 cut(s) 405
GlaI GCGC 1 cut(s) 150
GluI GCNGC 8 cut(s) 16, 117, 120, 123, 131, 134, 205, 326
HaeII RGCGCY 1 cut(s) 152
HapII CCGG 5 cut(s) 61, 70, 209, 276, 309
HgaI GACGC 4 cut(s) 114, 202, 222, 383
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 3 cut(s) 125, 168, 213
Hin1II CATG 2 cut(s) 634, 640
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 2 cut(s) 515, 674
HinfI GANTC 1 cut(s) 247
HpaII CCGG 5 cut(s) 61, 70, 209, 276, 309
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 5 cut(s) 12, 24, 100, 364, 691
Hpy188III TCNNGA 6 cut(s) 61, 244, 398, 437, 521, 684
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 4 cut(s) 88, 130, 218, 296
HpyAV CCTTC 2 cut(s) 549, 611
HpyCH4IV ACGT 2 cut(s) 168, 724
HpyCH4V TGCA 2 cut(s) 564, 668
HpyF10VI GCNNNNNNNGC 8 cut(s) 122, 210, 259, 322, 391, 410, 536, 682
HpyF3I CTNAG 5 cut(s) 11, 23, 409, 414, 612
HpySE526I ACGT 2 cut(s) 168, 724
Hsp92I GRCGYC 3 cut(s) 125, 168, 213
Hsp92II CATG 2 cut(s) 634, 640
HspAI GCGC 1 cut(s) 149
KflI GGGWCCC 1 cut(s) 622
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 2 cut(s) 280, 686
LmnI GCTCC 2 cut(s) 63, 646
Lsp1109I GCAGC 4 cut(s) 142, 145, 191, 337
LweI GCATC 1 cut(s) 677
MaeI CTAG 1 cut(s) 405
MaeII ACGT 2 cut(s) 168, 724
MaeIII GTNAC 1 cut(s) 484
MalI GATC 2 cut(s) 282, 688
MbiI CCGCTC 1 cut(s) 316
MboI GATC 2 cut(s) 280, 686
MboII GAAGA 7 cut(s) 66, 72, 297, 536, 564, 641, 713
MluCI AATT 7 cut(s) 94, 102, 353, 456, 471, 492, 580
MluI ACGCGT 1 cut(s) 231
MlyI GAGTC 1 cut(s) 241
MroI TCCGGA 1 cut(s) 60
MseI TTAA 3 cut(s) 29, 606, 711
MslI CAYNNNNRTG 1 cut(s) 635
MspI CCGG 5 cut(s) 61, 70, 209, 276, 309
MspR9I CCNGG 3 cut(s) 209, 210, 627
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 4 cut(s) 18, 233, 291, 685
MwoI GCNNNNNNNGC 8 cut(s) 122, 210, 259, 322, 391, 410, 536, 682
NciI CCSGG 2 cut(s) 209, 210
NdeII GATC 2 cut(s) 280, 686
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 2 cut(s) 634, 640
NlaIV GGNNCC 4 cut(s) 226, 623, 624, 642
NmeAIII GCCGAG 2 cut(s) 180, 234
NruI TCGCGA 1 cut(s) 685
NspI RCATGY 1 cut(s) 634
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 291, 457
PkrI GCNGC 8 cut(s) 17, 118, 121, 124, 132, 135, 206, 327
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Ppu21I YACGTR 1 cut(s) 725
PpuMI RGGWCCY 1 cut(s) 622
PsiI TTATAA 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 4 cut(s) 226, 623, 624, 642
PspPI GGNCC 2 cut(s) 311, 622
PspPPI RGGWCCY 1 cut(s) 622
RruI TCGCGA 1 cut(s) 685
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 635
Rsr2I CGGWCCG 1 cut(s) 311
RsrII CGGWCCG 1 cut(s) 311
SaqAI TTAA 3 cut(s) 29, 606, 711
SatI GCNGC 8 cut(s) 16, 117, 120, 123, 131, 134, 205, 326
Sau3AI GATC 2 cut(s) 280, 686
Sau96I GGNCC 2 cut(s) 311, 622
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 209, 210, 627
SfaNI GCATC 1 cut(s) 677
SinI GGWCC 2 cut(s) 311, 622
SmaI CCCGGG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SnaBI TACGTA 1 cut(s) 725
SrfI GCCCGGGC 1 cut(s) 210
Sse9I AATT 7 cut(s) 94, 102, 353, 456, 471, 492, 580
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 207, 208, 625
StyI CCWWGG 3 cut(s) 111, 547, 772
TaiI ACGT 2 cut(s) 171, 727
TaqI TCGA 2 cut(s) 245, 460
TasI AATT 7 cut(s) 94, 102, 353, 456, 471, 492, 580
TatI WGTACW 1 cut(s) 633
TauI GCSGC 4 cut(s) 18, 119, 122, 125
Tru1I TTAA 3 cut(s) 29, 606, 711
Tru9I TTAA 3 cut(s) 29, 606, 711
TscAI CASTG 3 cut(s) 194, 571, 703
TseI GCWGC 4 cut(s) 130, 133, 204, 325
TspDTI ATGAA 1 cut(s) 750
TspMI CCCGGG 1 cut(s) 208
TspRI CASTG 3 cut(s) 194, 571, 703
VpaK11BI GGWCC 2 cut(s) 311, 622
XapI RAATTY 2 cut(s) 94, 471
XceI RCATGY 1 cut(s) 634
XmaI CCCGGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 405
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.