Rh1CG303600

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012875
Physical Location & Seq
Forward (+)
57766587 .. 57768723
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG303600.1

Sequence Viewer

Length: 888 bp
ATGGCGGTTCTGAGCCGCGTTCTGAGACTAAGAGCGGCGGGAGTAGACCGCTTCGCAGTCCGGAGCTTCCGGTCTTCGTCTTCGTCGTGGCGAAATTCCGAAATTGACCCCAAGGCGGCGGCGGCGGCGTCGCAGCAGCTCGGGGAAAAGGCGCTTCCTTTACAGCGAGACGTCAAGGACAGAAACGTCCAGTGGGTTTTCCTCGGCTGCCCGGGCGTCGGCAAAGGCACCTACGCGTCTAAACTCTCGACTCTGCTCGGCGTGCCTCATATTGCTACCGGCGATCTCGTCCGCGACGAGCTTTCCTCTTCCGGTCCGCTAGCTAAGCAGCTTGAGGAGGTTGTAAATCAAGGCAACTTGGTTTCGGATGAGGTTATAATAAACTTGCTGTCCAAGCGTCTTGAAGCGAGCTCAGCTAAGGGTGAAACTGGCTTTATTCTTGATGGTTTCCCTCGCACAATTCGACAGGCGGAAATTTTAGAGGGAGTTACTGAAATTGACTTGGTAGTCAACCTAAAGCTTAGGGAAGAGGCTTTGCTTGCAAAGTGCCTTGGAAGAAGGATTTGCAGTGAGTGTGGAGGAAATTACAATGTTGCCTGCATTGACATTAAAGCTGAAAAAGGGAACCCTGGCATGTACATGGCTCCACTTCTTCCACCTCCACATTGTGCATCAAAGCTTATCTCGCGATCCGATGACACTGAAGAAGTTGTTAAGAGACGACTACGTATATATAATGAAATGAGTCAACCTGTGGAGGAGTTCTATCGCAGTCGGGGAAAATTGTTAGAGTTTGATCTTCCTGGAGGGATTCCAGAATCCTGGCCAAAGCTGCTTCGAGCTTTAAATCTGGAAGACCATGACGACAAAGAGTCTGCCGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

295

Amino Acids

32.35

Weight (kDa)

6.85

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 68 - 260 6.3e-39 Adenylate kinase
AAA_17 PF13207 68 - 187 1.1e-21 AAA domain
AAA_18 PF13238 68 - 186 3.7e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39270
fragaria_vesca FvH4_7g20530
malus_domestica MD01G1114300.v1.1 MD07G1182200.v1.1
prunus_persica Prupe.2G220900_v2.0.a1
pyrus_communis pycom01g14330 pycom07g17490
rosa_chinensis RchiOBHm_Chr1g0364421
rosa_laevigata RLG00000027481
rosa_multiflora Rmu_sc0001342.1_g000005
rosa_roxburghii Rroxscaffold_4G00292290
rosa_rugosa Rorug01G0316000 Rorug01G0316000
rosa_samantha Rh1AG324300 Rh1BG287000 Rh1CG303600 Rh1DG318500
rosa_wichuraiana Rw1G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AasI GACNNNNNNGTC 2 cut(s) 185, 506
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 45
AccII CGCG 4 cut(s) 18, 236, 294, 688
AccIII TCCGGA 1 cut(s) 60
AclWI GGATC 1 cut(s) 684
AcoI YGGCCR 1 cut(s) 824
AcsI RAATTY 2 cut(s) 94, 474
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 3 cut(s) 128, 171, 216
AdeI CACNNNGTG 1 cut(s) 668
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 115, 218
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 1 cut(s) 404
AhdI GACNNNNNGTC 1 cut(s) 871
AjnI CCWGG 3 cut(s) 628, 802, 821
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 3 cut(s) 19, 162, 712
AlwI GGATC 1 cut(s) 684
Ama87I CYCGRG 2 cut(s) 140, 211
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 1 cut(s) 824
ApeKI GCWGC 6 cut(s) 133, 136, 207, 328, 832, 881
ApoI RAATTY 2 cut(s) 94, 474
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 2 cut(s) 212, 213
AsuHPI GGTGA 1 cut(s) 434
AsuNHI GCTAGC 1 cut(s) 319
AvaI CYCGRG 2 cut(s) 140, 211
AvaII GGWCC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 826
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 413
BbsI GAAGAC 3 cut(s) 66, 72, 861
Bbv12I GWGCWC 1 cut(s) 413
BbvI GCAGC 5 cut(s) 145, 148, 194, 340, 819
BccI CCATC 1 cut(s) 437
BciT130I CCWGG 3 cut(s) 630, 804, 823
BcnI CCSGG 2 cut(s) 212, 213
BcoDI GTCTC 3 cut(s) 19, 162, 712
BfaI CTAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 155
BlpI GCTNAGC 2 cut(s) 324, 412
Bme1390I CCNGG 5 cut(s) 212, 213, 630, 804, 823
Bme18I GGWCC 1 cut(s) 314
BmeRI GACNNNNNGTC 1 cut(s) 871
BmeT110I CYCGRG 2 cut(s) 140, 211
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 3 cut(s) 229, 626, 645
BmrFI CCNGG 5 cut(s) 212, 213, 630, 804, 823
BmsI GCATC 1 cut(s) 680
BmtI GCTAGC 1 cut(s) 323
BpiI GAAGAC 3 cut(s) 66, 72, 861
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 2 cut(s) 417, 521
Bpu1102I GCTNAGC 2 cut(s) 324, 412
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 212, 213
BsaAI YACGTR 1 cut(s) 728
BsaHI GRCGYC 3 cut(s) 128, 171, 216
BsaJI CCNNGG 5 cut(s) 111, 202, 211, 550, 628
BsaWI WCCGGW 3 cut(s) 60, 69, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 218
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 190, 433
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 3 cut(s) 630, 804, 823
BseDI CCNNGG 5 cut(s) 111, 202, 211, 550, 628
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 115, 218
BseMII CTCAG 2 cut(s) 14, 426
BseNI ACTGG 2 cut(s) 190, 433
BseRI GAGGAG 2 cut(s) 350, 773
BseXI GCAGC 5 cut(s) 145, 148, 194, 340, 819
Bsh1236I CGCG 4 cut(s) 18, 236, 294, 688
BshFI GGCC 1 cut(s) 826
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 413
BsiHKCI CYCGRG 2 cut(s) 140, 211
BsiSI CCGG 5 cut(s) 61, 70, 212, 279, 312
BslI CCNNNNNNNGG 2 cut(s) 115, 218
BsmAI GTCTC 3 cut(s) 19, 162, 712
BsmBI CGTCTC 2 cut(s) 162, 712
BsnI GGCC 1 cut(s) 826
BsoBI CYCGRG 2 cut(s) 140, 211
Bsp1286I GDGCHC 1 cut(s) 413
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 3 cut(s) 283, 689, 796
Bsp1720I GCTNAGC 2 cut(s) 324, 412
Bsp68I TCGCGA 1 cut(s) 688
BspANI GGCC 1 cut(s) 826
BspCNI CTCAG 2 cut(s) 15, 425
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 4 cut(s) 18, 236, 294, 688
BspLI GGNNCC 3 cut(s) 229, 626, 645
BspOI GCTAGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 684
BspT107I GGYRCC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 2 cut(s) 190, 433
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 5 cut(s) 111, 202, 211, 550, 628
BssMI GATC 3 cut(s) 283, 689, 796
BssNI GRCGYC 3 cut(s) 128, 171, 216
BssT1I CCWWGG 2 cut(s) 111, 550
Bst2UI CCWGG 3 cut(s) 630, 804, 823
Bst6I CTCTTC 2 cut(s) 313, 522
BstACI GRCGYC 3 cut(s) 128, 171, 216
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 5 cut(s) 263, 321, 409, 540, 598
BstDEI CTNAG 7 cut(s) 11, 23, 29, 324, 412, 417, 521
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 4 cut(s) 18, 236, 294, 688
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 3 cut(s) 286, 692, 799
BstMAI GTCTC 3 cut(s) 19, 162, 712
BstMBI GATC 3 cut(s) 283, 689, 796
BstNI CCWGG 3 cut(s) 630, 804, 823
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 5 cut(s) 210, 211, 628, 802, 821
BstSNI TACGTA 1 cut(s) 728
BstUI CGCG 4 cut(s) 18, 236, 294, 688
BstV1I GCAGC 5 cut(s) 145, 148, 194, 340, 819
BstV2I GAAGAC 3 cut(s) 66, 72, 861
BstXI CCANNNNNNTGG 1 cut(s) 822
BsuRI GGCC 1 cut(s) 826
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 3 cut(s) 197, 574, 699
BtuMI TCGCGA 1 cut(s) 688
Cac8I GCNNGC 5 cut(s) 263, 321, 409, 540, 598
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 314
Cfr9I CCCGGG 1 cut(s) 211
CpoI CGGWCCG 1 cut(s) 314
CseI GACGC 4 cut(s) 117, 205, 225, 386
Csp6I GTAC 1 cut(s) 637
CspI CGGWCCG 1 cut(s) 314
CviAII CATG 4 cut(s) 634, 640, 860, 885
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 7 cut(s) 11, 23, 29, 324, 412, 417, 521
DpnI GATC 3 cut(s) 285, 691, 798
DpnII GATC 3 cut(s) 283, 689, 796
DraI TTTAAA 1 cut(s) 846
DraIII CACNNNGTG 1 cut(s) 668
DrdI GACNNNNNNGTC 2 cut(s) 185, 506
DriI GACNNNNNGTC 1 cut(s) 871
DseDI GACNNNNNNGTC 2 cut(s) 185, 506
EaeI YGGCCR 1 cut(s) 824
Eam1104I CTCTTC 2 cut(s) 313, 522
Eam1105I GACNNNNNGTC 1 cut(s) 871
EarI CTCTTC 2 cut(s) 313, 522
EciI GGCGGA 1 cut(s) 485
Ecl136II GAGCTC 1 cut(s) 411
Eco105I TACGTA 1 cut(s) 728
Eco130I CCWWGG 2 cut(s) 111, 550
Eco24I GRGCYC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 2 cut(s) 140, 211
EcoICRI GAGCTC 1 cut(s) 411
EcoRII CCWGG 3 cut(s) 628, 802, 821
EcoT14I CCWWGG 2 cut(s) 111, 550
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 2 cut(s) 111, 550
Esp3I CGTCTC 2 cut(s) 162, 712
FaeI CATG 4 cut(s) 637, 643, 863, 888
FaiI YATR 9 cut(s) 270, 377, 635, 641, 731, 733, 735, 861, 886
FatI CATG 4 cut(s) 633, 639, 859, 884
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 1 cut(s) 45
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 413
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 825
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 1 cut(s) 826
HapII CCGG 5 cut(s) 61, 70, 212, 279, 312
HgaI GACGC 4 cut(s) 117, 205, 225, 386
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 3 cut(s) 128, 171, 216
Hin1II CATG 4 cut(s) 637, 643, 863, 888
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 2 cut(s) 511, 749
HindII GTYRAC 2 cut(s) 511, 749
HindIII AAGCTT 2 cut(s) 518, 677
HinfI GANTC 5 cut(s) 250, 745, 811, 818, 872
HpaII CCGG 5 cut(s) 61, 70, 212, 279, 312
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 3 cut(s) 46, 511, 749
Hpy188I TCNGA 5 cut(s) 12, 24, 100, 367, 694
Hpy188III TCNNGA 7 cut(s) 61, 247, 401, 440, 687, 815, 851
Hpy8I GTNNAC 3 cut(s) 46, 511, 749
Hpy99I CGWCG 4 cut(s) 88, 133, 221, 299
HpyAV CCTTC 1 cut(s) 552
HpyCH4IV ACGT 3 cut(s) 171, 186, 727
HpyCH4V TGCA 4 cut(s) 542, 567, 600, 671
HpyF3I CTNAG 7 cut(s) 11, 23, 29, 324, 412, 417, 521
HpySE526I ACGT 3 cut(s) 171, 186, 727
Hsp92I GRCGYC 3 cut(s) 128, 171, 216
Hsp92II CATG 4 cut(s) 637, 643, 863, 888
HspAI GCGC 1 cut(s) 152
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 283, 689, 796
LmnI GCTCC 2 cut(s) 63, 649
Lsp1109I GCAGC 5 cut(s) 145, 148, 194, 340, 819
LweI GCATC 1 cut(s) 680
MaeI CTAG 1 cut(s) 320
MaeII ACGT 3 cut(s) 171, 186, 727
MaeIII GTNAC 1 cut(s) 487
MalI GATC 3 cut(s) 285, 691, 798
MbiI CCGCTC 1 cut(s) 35
MboI GATC 3 cut(s) 283, 689, 796
MboII GAAGA 9 cut(s) 66, 72, 300, 539, 567, 644, 716, 791, 866
MhlI GDGCHC 1 cut(s) 413
MlsI TGGCCA 1 cut(s) 826
MluCI AATT 7 cut(s) 94, 102, 459, 474, 495, 583, 782
MluI ACGCGT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 826
MlyI GAGTC 3 cut(s) 244, 754, 881
Mox20I TGGCCA 1 cut(s) 826
MroI TCCGGA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 826
MseI TTAA 3 cut(s) 609, 714, 845
MslI CAYNNNNRTG 1 cut(s) 638
Msp20I TGGCCA 1 cut(s) 826
MspI CCGG 5 cut(s) 61, 70, 212, 279, 312
MspR9I CCNGG 5 cut(s) 212, 213, 630, 804, 823
MvaI CCWGG 3 cut(s) 630, 804, 823
MvnI CGCG 4 cut(s) 18, 236, 294, 688
NciI CCSGG 2 cut(s) 212, 213
NdeII GATC 3 cut(s) 283, 689, 796
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 4 cut(s) 637, 643, 863, 888
NlaIV GGNNCC 3 cut(s) 229, 626, 645
NmeAIII GCCGAG 2 cut(s) 183, 237
NruI TCGCGA 1 cut(s) 688
NspI RCATGY 1 cut(s) 637
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 294, 460
PfeI GAWTC 2 cut(s) 811, 818
PfoI TCCNGGA 1 cut(s) 802
PleI GAGTC 3 cut(s) 244, 753, 880
PpsI GAGTC 3 cut(s) 244, 753, 880
Ppu21I YACGTR 1 cut(s) 728
PsiI TTATAA 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 413
Psp6I CCWGG 3 cut(s) 628, 802, 821
PspGI CCWGG 3 cut(s) 628, 802, 821
PspN4I GGNNCC 3 cut(s) 229, 626, 645
PspPI GGNCC 1 cut(s) 314
RruI TCGCGA 1 cut(s) 688
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
RseI CAYNNNNRTG 1 cut(s) 638
Rsr2I CGGWCCG 1 cut(s) 314
RsrII CGGWCCG 1 cut(s) 314
SacI GAGCTC 1 cut(s) 413
SaqAI TTAA 3 cut(s) 609, 714, 845
Sau3AI GATC 3 cut(s) 283, 689, 796
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 3 cut(s) 244, 754, 881
ScrFI CCNGG 5 cut(s) 212, 213, 630, 804, 823
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 1 cut(s) 680
SinI GGWCC 1 cut(s) 314
SmaI CCCGGG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SnaBI TACGTA 1 cut(s) 728
SrfI GCCCGGGC 1 cut(s) 213
Sse9I AATT 7 cut(s) 94, 102, 459, 474, 495, 583, 782
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 413
StyD4I CCNGG 5 cut(s) 210, 211, 628, 802, 821
StyI CCWWGG 2 cut(s) 111, 550
TaiI ACGT 3 cut(s) 174, 189, 730
TaqI TCGA 3 cut(s) 248, 463, 838
TasI AATT 7 cut(s) 94, 102, 459, 474, 495, 583, 782
TatI WGTACW 1 cut(s) 636
TauI GCSGC 7 cut(s) 18, 38, 119, 122, 125, 128, 881
TfiI GAWTC 2 cut(s) 811, 818
Tru1I TTAA 3 cut(s) 609, 714, 845
Tru9I TTAA 3 cut(s) 609, 714, 845
TscAI CASTG 3 cut(s) 197, 574, 706
TseI GCWGC 6 cut(s) 133, 136, 207, 328, 832, 881
TspDTI ATGAA 1 cut(s) 753
TspMI CCCGGG 1 cut(s) 211
TspRI CASTG 3 cut(s) 197, 574, 706
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 2 cut(s) 94, 474
XceI RCATGY 1 cut(s) 637
XmaI CCCGGG 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 320
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.