pycom01g14330

Belongs to the adenylate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012875
Physical Location & Seq
Forward (+)
14533569 .. 14535856
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g14330.4

Sequence Viewer

Length: 1053 bp
ATGAAAAAGGAAGACAAATTCCAACAGAATACAGAACACAAGTATTTTATTGCACGTGCCGTGGCGCGCCTAAAACCCACCACCACCCCTCTGCCCTCCCGGAACACATTAAACTCCCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTGTGCAATCCAAAAGGACTTGACTTTTTAGTCCCTCCCATGGCGGTTTTGGATCGCGTTCTGAAATTACGACGACCGGGAAGCTACTTCTCACTCCGGAGCTTCCGCTTCTCGCCTTTTCTAAATTCCGAAACTGACGTCAAAGCGTCTGCCTTCGTCATCCCAAAGCCTCTCCCCCTGCATCGCGACGTCGAGGGCAGGAATGTCCAGTGGGTCTTCCTCGGCTGCCCCGGCGTCGGCAAAGGCACCTACGCCTCCCGCCTCTGCCACCTCCTCGGCGTCCCCCACATCGCCACCGGCGATCTCGTCCGCGACGAGTTGTCGTCCTCCGGCCCCTTCGCTCTTCAGCTTGCGGAGGTTGTGAATCAGGGGAAATTGGTTTCGGATGAGATTATAATAAACTTGTTGTCCAAGCGTCTTGAGGCTAGTGCAGCGAAGGGTGAAACTGGCTTCATCCTTGACGGCTTCCCTCGGACGATTCGACAGGCGGAAATTTTAGAGGGAGTAACAGACATTGATTTGGTGATCAACCTAAAGCTTCGTGAAGAGGCTTTGCTTGCGAAGTGCCTTGGAAGAAGGATTTGTAGTGAGTGTGGAGGAAATTATAATGTTGCCTCCGTTGACATTAAGGCTGAGGACGGAAACCCTGGCATGTACATGGCTCCACTTCTTCCCCCTCCAAATTGTGCATCTAAGCTTATCACACGATCCGATGACACTGAAGAAGTTGTTAAGGAACGCCTCCGTATTTACAATGATATGAGTCAACCCGTGGAGGAGTTCTACCGAAGTCGAGGAAAATTGTTAGAGTTTGATCTTCTTGGAGGGATTCCCGAATCGTGGCCAAAGCTACTTCAAGCTTTGAAGCTGGAAGACAATGAAGACAAATGGTCTGCAGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

351

Amino Acids

38.81

Weight (kDa)

8.05

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39270
fragaria_vesca FvH4_7g20530
malus_domestica MD01G1114300.v1.1 MD07G1182200.v1.1
prunus_persica Prupe.2G220900_v2.0.a1
pyrus_communis pycom01g14330 pycom07g17490
rosa_chinensis RchiOBHm_Chr1g0364421
rosa_laevigata RLG00000027481
rosa_multiflora Rmu_sc0001342.1_g000005
rosa_roxburghii Rroxscaffold_4G00292290
rosa_rugosa Rorug01G0316000 Rorug01G0316000
rosa_samantha Rh1AG324300 Rh1BG287000 Rh1CG303600 Rh1DG318500
rosa_wichuraiana Rw1G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 542, 753
AasI GACNNNNNNGTC 1 cut(s) 176
AatII GACGTC 2 cut(s) 288, 339
AccB1I GGYRCC 1 cut(s) 392
AccII CGCG 4 cut(s) 67, 204, 333, 459
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 6 cut(s) 191, 253, 406, 457, 500, 635
AclWI GGATC 2 cut(s) 207, 849
AcoI YGGCCR 1 cut(s) 989
AcsI RAATTY 3 cut(s) 17, 271, 639
AcuI CTGAAG 2 cut(s) 476, 888
AcvI CACGTG 1 cut(s) 56
AcyI GRCGYC 4 cut(s) 285, 336, 381, 426
AfaI GTAC 1 cut(s) 803
AfiI CCNNNNNNNGG 3 cut(s) 187, 383, 987
AgsI TTSAA 2 cut(s) 1004, 1012
AhdI GACNNNNNGTC 2 cut(s) 466, 1036
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 8 cut(s) 231, 249, 496, 685, 844, 997, 1007, 1015
AluI AGCT 8 cut(s) 231, 249, 496, 685, 844, 997, 1007, 1015
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 207, 849
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 2 cut(s) 478, 989
ApeKI GCWGC 4 cut(s) 372, 578, 1043, 1046
ApoI RAATTY 3 cut(s) 17, 271, 639
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AscI GGCGCGCC 1 cut(s) 65
AspLEI GCGC 2 cut(s) 67, 69
AspS9I GGNCC 1 cut(s) 479
AsuC2I CCSGG 3 cut(s) 100, 225, 378
AsuHPI GGTGA 2 cut(s) 599, 682
BalI TGGCCA 1 cut(s) 991
BanI GGYRCC 1 cut(s) 392
BbrPI CACGTG 1 cut(s) 56
BbsI GAAGAC 4 cut(s) 18, 355, 1026, 1035
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 2 cut(s) 359, 590
BceAI ACGGC 2 cut(s) 44, 625
BciT130I CCWGG 1 cut(s) 795
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 3 cut(s) 100, 225, 378
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 1041
BisI GCNGC 4 cut(s) 373, 579, 1044, 1047
BlsI GCNGC 4 cut(s) 374, 580, 1045, 1048
Bme1390I CCNGG 4 cut(s) 100, 225, 378, 795
BmeRI GACNNNNNGTC 2 cut(s) 466, 1036
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 3 cut(s) 394, 481, 810
BmrFI CCNGG 4 cut(s) 100, 225, 378, 795
BmsI GCATC 2 cut(s) 337, 845
BpiI GAAGAC 4 cut(s) 18, 355, 1026, 1035
Bpu10I CCTNAGC 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 3 cut(s) 100, 225, 378
BsaAI YACGTR 1 cut(s) 56
BsaHI GRCGYC 4 cut(s) 285, 336, 381, 426
BsaJI CCNNGG 9 cut(s) 60, 186, 367, 376, 421, 617, 715, 793, 918
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 383, 987
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 355, 598
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 9 cut(s) 60, 186, 367, 376, 421, 617, 715, 793, 918
BseGI GGATG 3 cut(s) 306, 538, 600
BseLI CCNNNNNNNGG 3 cut(s) 187, 383, 987
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 2 cut(s) 355, 598
BsePI GCGCGC 1 cut(s) 65
BseRI GAGGAG 2 cut(s) 410, 938
BseXI GCAGC 2 cut(s) 359, 590
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 4 cut(s) 67, 204, 333, 459
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 480, 991
BshNI GGYRCC 1 cut(s) 392
BsiEI CGRYCG 1 cut(s) 224
BsiSI CCGG 6 cut(s) 100, 224, 244, 378, 444, 477
BslFI GGGAC 2 cut(s) 164, 413
BslI CCNNNNNNNGG 3 cut(s) 187, 383, 987
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 2 cut(s) 164, 413
BsnI GGCC 2 cut(s) 480, 991
Bsp13I TCCGGA 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 5 cut(s) 199, 448, 672, 854, 961
Bsp19I CCATGG 1 cut(s) 186
Bsp68I TCGCGA 1 cut(s) 333
BspACI CCGC 6 cut(s) 191, 253, 406, 457, 500, 635
BspANI GGCC 2 cut(s) 480, 991
BspCNI CTCAG 1 cut(s) 772
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 4 cut(s) 67, 204, 333, 459
BspLI GGNNCC 3 cut(s) 394, 481, 810
BspMAI CTGCAG 1 cut(s) 1045
BspPI GGATC 2 cut(s) 207, 849
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 443
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 2 cut(s) 355, 598
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 9 cut(s) 60, 186, 367, 376, 421, 617, 715, 793, 918
BssHII GCGCGC 1 cut(s) 65
BssMI GATC 5 cut(s) 199, 448, 672, 854, 961
BssNI GRCGYC 4 cut(s) 285, 336, 381, 426
BssT1I CCWWGG 2 cut(s) 186, 715
Bst2UI CCWGG 1 cut(s) 795
Bst6I CTCTTC 2 cut(s) 495, 687
BstACI GRCGYC 4 cut(s) 285, 336, 381, 426
BstAUI TGTACA 1 cut(s) 801
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 67, 498, 705
BstDEI CTNAG 2 cut(s) 780, 840
BstDSI CCRYGG 3 cut(s) 60, 186, 918
BstF5I GGATG 3 cut(s) 306, 538, 600
BstFNI CGCG 4 cut(s) 67, 204, 333, 459
BstHHI GCGC 2 cut(s) 67, 69
BstKTI GATC 5 cut(s) 202, 451, 675, 857, 964
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 5 cut(s) 199, 448, 672, 854, 961
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 3 cut(s) 378, 578, 704
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 1 cut(s) 802
BstSCI CCNGG 4 cut(s) 98, 223, 376, 793
BstSFI CTRYAG 1 cut(s) 1041
BstUI CGCG 4 cut(s) 67, 204, 333, 459
BstV1I GCAGC 2 cut(s) 359, 590
BstV2I GAAGAC 4 cut(s) 18, 355, 1026, 1035
BsuRI GGCC 2 cut(s) 480, 991
BtgI CCRYGG 3 cut(s) 60, 186, 918
BtgZI GCGATG 2 cut(s) 314, 421
BtsCI GGATG 3 cut(s) 306, 538, 600
BtsIMutI CAGTG 2 cut(s) 362, 864
BtuMI TCGCGA 1 cut(s) 333
Cac8I GCNNGC 3 cut(s) 67, 498, 705
CfoI GCGC 2 cut(s) 67, 69
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 479
CseI GACGC 4 cut(s) 282, 370, 415, 551
Csp6I GTAC 1 cut(s) 802
CviAII CATG 4 cut(s) 187, 799, 805, 1050
CviQI GTAC 1 cut(s) 802
DdeI CTNAG 2 cut(s) 780, 840
DpnI GATC 5 cut(s) 201, 450, 674, 856, 963
DpnII GATC 5 cut(s) 199, 448, 672, 854, 961
DrdI GACNNNNNNGTC 1 cut(s) 176
DriI GACNNNNNGTC 2 cut(s) 466, 1036
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 989
Eam1104I CTCTTC 2 cut(s) 495, 687
Eam1105I GACNNNNNGTC 2 cut(s) 466, 1036
EarI CTCTTC 2 cut(s) 495, 687
EciI GGCGGA 1 cut(s) 650
Eco130I CCWWGG 2 cut(s) 186, 715
Eco57I CTGAAG 2 cut(s) 476, 888
Eco72I CACGTG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 793
EcoT14I CCWWGG 2 cut(s) 186, 715
ErhI CCWWGG 2 cut(s) 186, 715
FaeI CATG 4 cut(s) 190, 802, 808, 1053
FaiI YATR 7 cut(s) 188, 542, 753, 800, 806, 908, 1051
FaqI GGGAC 2 cut(s) 164, 413
FatI CATG 4 cut(s) 186, 798, 804, 1049
FauI CCCGC 1 cut(s) 413
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 4 cut(s) 373, 579, 1044, 1047
FokI GGATG 3 cut(s) 293, 545, 587
Fsp4HI GCNGC 4 cut(s) 373, 579, 1044, 1047
FspBI CTAG 1 cut(s) 573
GlaI GCGC 2 cut(s) 66, 68
GluI GCNGC 4 cut(s) 373, 579, 1044, 1047
HaeIII GGCC 2 cut(s) 480, 991
HapII CCGG 6 cut(s) 100, 224, 244, 378, 444, 477
HgaI GACGC 4 cut(s) 282, 370, 415, 551
HhaI GCGC 2 cut(s) 67, 69
Hin1I GRCGYC 4 cut(s) 285, 336, 381, 426
Hin1II CATG 4 cut(s) 190, 802, 808, 1053
Hin6I GCGC 2 cut(s) 65, 67
HinP1I GCGC 2 cut(s) 65, 67
HincII GTYRAC 2 cut(s) 769, 914
HindII GTYRAC 2 cut(s) 769, 914
HindIII AAGCTT 3 cut(s) 683, 842, 1005
HinfI GANTC 5 cut(s) 511, 625, 910, 976, 983
HpaII CCGG 6 cut(s) 100, 224, 244, 378, 444, 477
HphI GGTGA 2 cut(s) 599, 682
Hpy166II GTNNAC 2 cut(s) 769, 914
Hpy188I TCNGA 5 cut(s) 210, 277, 532, 621, 859
Hpy188III TCNNGA 5 cut(s) 244, 332, 566, 689, 980
Hpy8I GTNNAC 2 cut(s) 769, 914
Hpy99I CGWCG 5 cut(s) 222, 338, 341, 386, 464
HpyAV CCTTC 4 cut(s) 310, 493, 577, 717
HpyCH4IV ACGT 3 cut(s) 55, 285, 336
HpyCH4V TGCA 6 cut(s) 53, 153, 328, 578, 836, 1043
HpyF10VI GCNNNNNNNGC 3 cut(s) 378, 578, 704
HpyF3I CTNAG 2 cut(s) 780, 840
HpySE526I ACGT 3 cut(s) 55, 285, 336
Hsp92I GRCGYC 4 cut(s) 285, 336, 381, 426
Hsp92II CATG 4 cut(s) 190, 802, 808, 1053
HspAI GCGC 2 cut(s) 65, 67
Kpn2I TCCGGA 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 5 cut(s) 199, 448, 672, 854, 961
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 2 cut(s) 246, 814
Lsp1109I GCAGC 2 cut(s) 359, 590
LweI GCATC 2 cut(s) 337, 845
MaeI CTAG 1 cut(s) 573
MaeII ACGT 3 cut(s) 55, 285, 336
MaeIII GTNAC 1 cut(s) 652
MalI GATC 5 cut(s) 201, 450, 674, 856, 963
MboI GATC 5 cut(s) 199, 448, 672, 854, 961
MlsI TGGCCA 1 cut(s) 991
MluCI AATT 8 cut(s) 17, 212, 271, 521, 639, 748, 829, 947
MluNI TGGCCA 1 cut(s) 991
MlyI GAGTC 1 cut(s) 919
MmeI TCCRAC 1 cut(s) 46
Mox20I TGGCCA 1 cut(s) 991
MroI TCCGGA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 991
MseI TTAA 3 cut(s) 110, 774, 879
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 991
MspI CCGG 6 cut(s) 100, 224, 244, 378, 444, 477
MspR9I CCNGG 4 cut(s) 100, 225, 378, 795
MvaI CCWGG 1 cut(s) 795
MvnI CGCG 4 cut(s) 67, 204, 333, 459
MwoI GCNNNNNNNGC 3 cut(s) 378, 578, 704
NciI CCSGG 3 cut(s) 100, 225, 378
NcoI CCATGG 1 cut(s) 186
NdeII GATC 5 cut(s) 199, 448, 672, 854, 961
NlaIII CATG 4 cut(s) 190, 802, 808, 1053
NlaIV GGNNCC 3 cut(s) 394, 481, 810
NmeAIII GCCGAG 2 cut(s) 348, 402
NruI TCGCGA 1 cut(s) 333
NspI RCATGY 1 cut(s) 802
PalAI GGCGCGCC 1 cut(s) 65
PauI GCGCGC 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 495
PcsI WCGNNNNNNNCGW 3 cut(s) 444, 459, 625
PfeI GAWTC 4 cut(s) 511, 625, 976, 983
PfoI TCCNGGA 1 cut(s) 98
PkrI GCNGC 4 cut(s) 374, 580, 1045, 1048
PleI GAGTC 1 cut(s) 918
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
PpsI GAGTC 1 cut(s) 918
Ppu21I YACGTR 1 cut(s) 56
PsiI TTATAA 2 cut(s) 542, 753
Psp6I CCWGG 1 cut(s) 793
PspCI CACGTG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 3 cut(s) 394, 481, 810
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 1045
PteI GCGCGC 1 cut(s) 65
RruI TCGCGA 1 cut(s) 333
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
RseI CAYNNNNRTG 1 cut(s) 803
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 3 cut(s) 110, 774, 879
SatI GCNGC 4 cut(s) 373, 579, 1044, 1047
Sau3AI GATC 5 cut(s) 199, 448, 672, 854, 961
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 1 cut(s) 919
ScrFI CCNGG 4 cut(s) 100, 225, 378, 795
SfaNI GCATC 2 cut(s) 337, 845
SfcI CTRYAG 1 cut(s) 1041
SgrAI CRCCGGYG 1 cut(s) 443
SgsI GGCGCGCC 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 8 cut(s) 17, 212, 271, 521, 639, 748, 829, 947
SsiI CCGC 6 cut(s) 191, 253, 406, 457, 500, 635
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 4 cut(s) 98, 223, 376, 793
StyI CCWWGG 2 cut(s) 186, 715
TaiI ACGT 3 cut(s) 58, 288, 339
TaqI TCGA 3 cut(s) 339, 628, 940
TasI AATT 8 cut(s) 17, 212, 271, 521, 639, 748, 829, 947
TatI WGTACW 1 cut(s) 801
TfiI GAWTC 4 cut(s) 511, 625, 976, 983
Tru1I TTAA 3 cut(s) 110, 774, 879
Tru9I TTAA 3 cut(s) 110, 774, 879
TscAI CASTG 2 cut(s) 362, 871
TseI GCWGC 4 cut(s) 372, 578, 1043, 1046
TspDTI ATGAA 3 cut(s) 17, 589, 1041
TspGWI ACGGA 3 cut(s) 754, 801, 881
TspRI CASTG 2 cut(s) 362, 871
XapI RAATTY 3 cut(s) 17, 271, 639
XceI RCATGY 1 cut(s) 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 1 cut(s) 573
ZraI GACGTC 2 cut(s) 286, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.