Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012875

Physical Location & Seq

Genomic Coordinates Forward (+)

16680356 .. 16682524

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGGTTCTGAGCCGCGTTCTGAGACTGAGAGCGGCAGGACTAGACCGCTTCGTCGTCCGGAGCTTCCAGTCGTCGTCGTCGTCGTGGCGAAATTCCGAAATTGACCCCAAGGCGGCGGCGGTGCTTCCTTTACAGCGAGACGTCAAGGACAGAAATGTCCAGTGGGTTTTCCTCGGCTGCCCCGGCGTCGGCAAAGGCACCTACGCCTCTAAACTGTCGACTCTCCTCGGCGTGCCGCACATCGCCACCGGCGATCTCGTCCGCGACGAGCTCTCCTCCAAAGGTCCTCTAGCTCACCAGCTTGAGGAGGTTGTGAATCAAGGAAAGTTGGTTTCGGATGAGATTATAATAGACTTGCTGTCCAAGCGTCTTGAAGACAGCGCAGCTAAGGGTGAAACTGGCTTTATTCTTGATGGCTTCCCTCGCACGATTCGGCAGGCGGAAATTTTAGAGGGAGTAACAGAAATCGACTTGGTAATCAACCTAAAGCTTCGTGAAGAGGCTTTGCTTGCAAAGTGCCTTGGAAGAAGGATTTGTAGCGAGTGTGGAGGAAACTACAATGTTGCCACTATTGACATTAAAGCTGAGGAGGGGAACCCTAGCATGTACATGGCTCCACTTCTTCCGCCTTCACATTGTGCATCAAAGCTCATCTCACGATCTGATGACACTGAAGAAGTTGTCAAGAGACGACTACATATTTATAATGAAAAGAGTCAACCTGTAGAGGAGTTCTACCGCAGTCGGGGAAAATTGTTAGAGTTTGATCTTCCCGGAGGGATTCCGGAATCCTGGCCAAAGCTGCTTCGAGCTTTAAACCTGGAAGATCATGACGATAAACAATCTGCTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

287

Amino Acids

31.6

Weight (kDa)

6.04

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	59 - 251	5.2e-39	Adenylate kinase
AAA_17	PF13207	59 - 178	1.1e-21	AAA domain
AAA_18	PF13238	59 - 177	2.5e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39270
fragaria_vesca	FvH4_7g20530
malus_domestica	MD01G1114300.v1.1 MD07G1182200.v1.1
prunus_persica	Prupe.2G220900_v2.0.a1
pyrus_communis	pycom01g14330 pycom07g17490
rosa_chinensis	RchiOBHm_Chr1g0364421
rosa_laevigata	RLG00000027481
rosa_multiflora	Rmu_sc0001342.1_g000005
rosa_roxburghii	Rroxscaffold_4G00292290
rosa_rugosa	Rorug01G0316000 Rorug01G0316000
rosa_samantha	Rh1AG324300 Rh1BG287000 Rh1CG303600 Rh1DG318500
rosa_wichuraiana	Rw1G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	350, 708
AasI	GACNNNNNNGTC	2 cut(s)	53, 158
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	221
AccII	CGCG	2 cut(s)	18, 267
AccIII	TCCGGA	2 cut(s)	60, 787
AcoI	YGGCCR	1 cut(s)	797
AcsI	RAATTY	2 cut(s)	94, 447
AcuI	CTGAAG	1 cut(s)	696
AcyI	GRCGYC	2 cut(s)	144, 189
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	4 cut(s)	115, 191, 307, 748
AgsI	TTSAA	1 cut(s)	377
AhdI	GACNNNNNGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	794, 822
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	19, 135, 685
Aor13HI	TCCGGA	2 cut(s)	60, 787
AoxI	GGCC	1 cut(s)	797
ApeKI	GCWGC	5 cut(s)	180, 386, 805, 851, 854
ApoI	RAATTY	2 cut(s)	94, 447
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	2 cut(s)	186, 777
AsuHPI	GGTGA	2 cut(s)	290, 407
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	4 cut(s)	167, 398, 792, 838
BccI	CCATC	1 cut(s)	410
BciT130I	CCWGG	2 cut(s)	796, 824
BcnI	CCSGG	2 cut(s)	186, 777
BcoDI	GTCTC	3 cut(s)	19, 135, 685
BfaI	CTAG	3 cut(s)	44, 293, 603
BfmI	CTRYAG	2 cut(s)	726, 852
Bme1390I	CCNGG	4 cut(s)	186, 777, 796, 824
Bme18I	GGWCC	1 cut(s)	287
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	202, 599, 618
BmrFI	CCNGG	4 cut(s)	186, 777, 796, 824
BmsI	GCATC	1 cut(s)	653
BpiI	GAAGAC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bpu10I	CCTNAGC	2 cut(s)	390, 588
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	2 cut(s)	186, 777
BsaHI	GRCGYC	2 cut(s)	144, 189
BsaJI	CCNNGG	5 cut(s)	111, 175, 184, 229, 523
BsaWI	WCCGGW	2 cut(s)	60, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 191, 307, 748
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	3 cut(s)	70, 163, 406
BseAI	TCCGGA	2 cut(s)	60, 787
BseBI	CCWGG	2 cut(s)	796, 824
BseDI	CCNNGG	5 cut(s)	111, 175, 184, 229, 523
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	4 cut(s)	115, 191, 307, 748
BseMII	CTCAG	3 cut(s)	14, 20, 579
BseNI	ACTGG	3 cut(s)	70, 163, 406
BseRI	GAGGAG	5 cut(s)	218, 268, 323, 605, 746
BseXI	GCAGC	4 cut(s)	167, 398, 792, 838
Bsh1236I	CGCG	2 cut(s)	18, 267
BshFI	GGCC	1 cut(s)	799
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	5 cut(s)	61, 186, 252, 777, 788
BslI	CCNNNNNNNGG	4 cut(s)	115, 191, 307, 748
BsmAI	GTCTC	3 cut(s)	19, 135, 685
BsmBI	CGTCTC	2 cut(s)	135, 685
BsnI	GGCC	1 cut(s)	799
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp13I	TCCGGA	2 cut(s)	60, 787
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	256, 662, 769, 829
BspANI	GGCC	1 cut(s)	799
BspCNI	CTCAG	3 cut(s)	15, 21, 580
BspEI	TCCGGA	2 cut(s)	60, 787
BspFNI	CGCG	2 cut(s)	18, 267
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	3 cut(s)	202, 599, 618
BspMAI	CTGCAG	1 cut(s)	856
BspT107I	GGYRCC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	70, 163, 406
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	5 cut(s)	111, 175, 184, 229, 523
BssMI	GATC	4 cut(s)	256, 662, 769, 829
BssNI	GRCGYC	2 cut(s)	144, 189
BssT1I	CCWWGG	2 cut(s)	111, 523
Bst2UI	CCWGG	2 cut(s)	796, 824
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	2 cut(s)	144, 189
BstAUI	TGTACA	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	236, 441, 513
BstDEI	CTNAG	5 cut(s)	11, 23, 29, 390, 588
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	2 cut(s)	18, 267
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	4 cut(s)	259, 665, 772, 832
BstMAI	GTCTC	3 cut(s)	19, 135, 685
BstMBI	GATC	4 cut(s)	256, 662, 769, 829
BstMWI	GCNNNNNNNGC	5 cut(s)	186, 367, 426, 512, 805
BstNI	CCWGG	2 cut(s)	796, 824
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	4 cut(s)	184, 775, 794, 822
BstSFI	CTRYAG	2 cut(s)	726, 852
BstUI	CGCG	2 cut(s)	18, 267
BstV1I	GCAGC	4 cut(s)	167, 398, 792, 838
BstV2I	GAAGAC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	799
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	170, 672
Cac8I	GCNNGC	3 cut(s)	236, 441, 513
CciI	TCATGA	1 cut(s)	832
CfoI	GCGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	2 cut(s)	178, 359
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	4 cut(s)	607, 613, 833, 858
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	5 cut(s)	11, 23, 29, 390, 588
DpnI	GATC	4 cut(s)	258, 664, 771, 831
DpnII	GATC	4 cut(s)	256, 662, 769, 829
DraI	TTTAAA	1 cut(s)	819
DraIII	CACNNNGTG	1 cut(s)	641
DrdI	GACNNNNNNGTC	2 cut(s)	53, 158
DriI	GACNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	2 cut(s)	53, 158
EaeI	YGGCCR	1 cut(s)	797
Eam1104I	CTCTTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	2 cut(s)	458, 618
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	111, 523
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	696
EcoICRI	GAGCTC	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	794, 822
EcoT14I	CCWWGG	2 cut(s)	111, 523
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	111, 523
Esp3I	CGTCTC	2 cut(s)	135, 685
FaeI	CATG	4 cut(s)	610, 616, 836, 861
FaiI	YATR	7 cut(s)	350, 608, 614, 702, 708, 834, 859
FatI	CATG	4 cut(s)	606, 612, 832, 857
FblI	GTMKAC	1 cut(s)	221
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	3 cut(s)	44, 293, 603
GlaI	GCGC	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	799
HapII	CCGG	5 cut(s)	61, 186, 252, 777, 788
HgaI	GACGC	2 cut(s)	178, 359
HhaI	GCGC	1 cut(s)	386
Hin1I	GRCGYC	2 cut(s)	144, 189
Hin1II	CATG	4 cut(s)	610, 616, 836, 861
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	2 cut(s)	222, 722
HindII	GTYRAC	2 cut(s)	222, 722
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	6 cut(s)	223, 319, 433, 718, 784, 791
HpaII	CCGG	5 cut(s)	61, 186, 252, 777, 788
HphI	GGTGA	2 cut(s)	290, 407
Hpy166II	GTNNAC	2 cut(s)	222, 722
Hpy188I	TCNGA	5 cut(s)	12, 24, 100, 340, 667
Hpy188III	TCNNGA	8 cut(s)	61, 374, 413, 497, 660, 688, 788, 833
Hpy8I	GTNNAC	2 cut(s)	222, 722
Hpy99I	CGWCG	7 cut(s)	59, 79, 82, 85, 88, 194, 272
HpyAV	CCTTC	2 cut(s)	525, 642
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	515, 644, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	186, 367, 426, 512, 805
HpyF3I	CTNAG	5 cut(s)	11, 23, 29, 390, 588
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	2 cut(s)	144, 189
Hsp92II	CATG	4 cut(s)	610, 616, 836, 861
HspAI	GCGC	1 cut(s)	384
Kpn2I	TCCGGA	2 cut(s)	60, 787
Kzo9I	GATC	4 cut(s)	256, 662, 769, 829
LmnI	GCTCC	2 cut(s)	63, 622
Lsp1109I	GCAGC	4 cut(s)	167, 398, 792, 838
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	3 cut(s)	44, 293, 603
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	4 cut(s)	258, 664, 771, 831
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	4 cut(s)	256, 662, 769, 829
MboII	GAAGA	7 cut(s)	389, 512, 540, 617, 689, 764, 839
MhlI	GDGCHC	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	799
MluCI	AATT	4 cut(s)	94, 102, 447, 755
MluNI	TGGCCA	1 cut(s)	799
MlyI	GAGTC	2 cut(s)	217, 727
Mox20I	TGGCCA	1 cut(s)	799
MroI	TCCGGA	2 cut(s)	60, 787
MscI	TGGCCA	1 cut(s)	799
MseI	TTAA	2 cut(s)	582, 818
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	799
MspI	CCGG	5 cut(s)	61, 186, 252, 777, 788
MspR9I	CCNGG	4 cut(s)	186, 777, 796, 824
MvaI	CCWGG	2 cut(s)	796, 824
MvnI	CGCG	2 cut(s)	18, 267
MwoI	GCNNNNNNNGC	5 cut(s)	186, 367, 426, 512, 805
NciI	CCSGG	2 cut(s)	186, 777
NdeII	GATC	4 cut(s)	256, 662, 769, 829
NlaIII	CATG	4 cut(s)	610, 616, 836, 861
NlaIV	GGNNCC	3 cut(s)	202, 599, 618
NmeAIII	GCCGAG	2 cut(s)	156, 210
NspI	RCATGY	1 cut(s)	610
PagI	TCATGA	1 cut(s)	832
PcsI	WCGNNNNNNNCGW	4 cut(s)	80, 83, 252, 267
PfeI	GAWTC	4 cut(s)	319, 433, 784, 791
PfoI	TCCNGGA	1 cut(s)	775
PleI	GAGTC	2 cut(s)	217, 726
PpsI	GAGTC	2 cut(s)	217, 726
PpuMI	RGGWCCY	1 cut(s)	287
PsiI	TTATAA	2 cut(s)	350, 708
Psp124BI	GAGCTC	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	794, 822
PspGI	CCWGG	2 cut(s)	794, 822
PspN4I	GGNNCC	3 cut(s)	202, 599, 618
PspPI	GGNCC	1 cut(s)	287
PspPPI	RGGWCCY	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	856
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	611
SacI	GAGCTC	1 cut(s)	276
SalI	GTCGAC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	582, 818
Sau3AI	GATC	4 cut(s)	256, 662, 769, 829
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	2 cut(s)	217, 727
ScrFI	CCNGG	4 cut(s)	186, 777, 796, 824
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	2 cut(s)	726, 852
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	94, 102, 447, 755
SspMI	CTAG	3 cut(s)	44, 293, 603
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	4 cut(s)	184, 775, 794, 822
StyI	CCWWGG	2 cut(s)	111, 523
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	221, 471, 811
TasI	AATT	4 cut(s)	94, 102, 447, 755
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	5 cut(s)	18, 38, 119, 122, 241
TfiI	GAWTC	4 cut(s)	319, 433, 784, 791
Tru1I	TTAA	2 cut(s)	582, 818
Tru9I	TTAA	2 cut(s)	582, 818
TscAI	CASTG	2 cut(s)	170, 679
TseI	GCWGC	5 cut(s)	180, 386, 805, 851, 854
TspDTI	ATGAA	1 cut(s)	726
TspRI	CASTG	2 cut(s)	170, 679
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	2 cut(s)	94, 447
XceI	RCATGY	1 cut(s)	610
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	3 cut(s)	44, 293, 603
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.