Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014941

Physical Location & Seq

Genomic Coordinates Reverse (-)

16543832 .. 16545746

Gene Structure 1915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTATTAAACTAGCAATTCTATTTACCACATTTGTTCTTTTTAGCCTCGCCGACGCTAGAATCCCCGGTATTTACTCCGGCGGCGCATGGCAAAACGCACACGCCACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCTTGTGGTTACGGTAACCTATACAGCCAAGGGTACGGGACCAACACGGCTGCTTTGAGTACGGCGCTGTTTAACAATGGTATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGACCCTCAATGGTGTCACTCAGGTAGTCCTTCGATCCTCATCACCGCAACCAATTTCTGCCCACCAAACTTGGCTCAGCCTAGCGACAACGGAGGATGGTGCAACCCACCACGTGAACACTTTGACCTAGCCATGCCTGTCTTCCTTAAGATCGCTCAATATCGCGCCGGCATTGTCCCCGTCTCATACCGCAGGGTGCCATGTAGAAAGAGAGGAGGCATAAGGTTCACAATCAACGGTCACCGTTACTTCAACTTGGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGAGGGCTAGTGTGAAAGGATCACGGACTGGTTGGATGAGTTTGAGCAGAAACTGGGGACAAAACTGGCAATCTAATGCTGTTTTGGTTGGTCAAGCACTCTCTTTCCGTGTCACAGGCAGTGACCGTAGAACATCTACTTCCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACCTTTGTCGGGAAGAATTTCAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006949 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009987 GO:0030054 GO:0030312 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

257

Amino Acids

27.85

Weight (kDa)

9.76

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	36 - 159	4.1e-09	EXPB1-like domain 1
DPBB_1	PF03330	66 - 153	2.2e-21	Lytic transglycolase
Expansin_C	PF01357	164 - 241	2.2e-27	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39700 AT3G55500
fragaria_vesca	FvH4_7g22700
malus_domestica	MD01G1135600.v1.1 MD07G1200300.v1.1
prunus_persica	Prupe.2G237000_v2.0.a1
pyrus_communis	pycom01g15640 pycom07g18720
rosa_chinensis	RchiOBHm_Chr1g0367791
rosa_laevigata	RLG00000027263
rosa_multiflora	Rmu_ssc0000395.1_g000022
rosa_roxburghii	Rroxscaffold_4G00289220
rosa_rugosa	Rorug01G0336600
rosa_samantha	Rh1BG305700 Rh1CG321300
rosa_wichuraiana	Rw1G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AccII	CGCG	1 cut(s)	435
AciI	CCGC	3 cut(s)	84, 315, 460
AclWI	GGATC	2 cut(s)	298, 592
AcsI	RAATTY	1 cut(s)	760
AcvI	CACGTG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	185, 211
AfiI	CCNNNNNNNGG	1 cut(s)	753
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	707
AleI	CACNNNNGTG	1 cut(s)	542
AluBI	AGCT	2 cut(s)	152, 256
AluI	AGCT	2 cut(s)	152, 256
Alw26I	GTCTC	2 cut(s)	457, 552
AlwI	GGATC	2 cut(s)	298, 592
AlwNI	CAGNNNCTG	1 cut(s)	618
ApeKI	GCWGC	2 cut(s)	123, 200
ApoI	RAATTY	1 cut(s)	760
Asp700I	GAANNNNTTC	1 cut(s)	761
AspLEI	GCGC	4 cut(s)	89, 217, 266, 437
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	304, 503
AvaII	GGWCC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	466
BbrPI	CACGTG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	135, 187
BccI	CCATC	1 cut(s)	360
BceAI	ACGGC	2 cut(s)	213, 228
BciT130I	CCWGG	1 cut(s)	709
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	457, 552
BfaI	CTAG	5 cut(s)	14, 60, 351, 398, 573
BfoI	RGCGCY	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	3 cut(s)	85, 124, 201
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	3 cut(s)	86, 125, 202
Bme1390I	CCNGG	2 cut(s)	69, 709
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	4 cut(s)	190, 244, 468, 720
BmrFI	CCNGG	2 cut(s)	69, 709
BmrI	ACTGGG	1 cut(s)	628
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	67, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	753
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	4 cut(s)	598, 623, 635, 734
Bse8I	GATNNNNATC	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	709
BseDI	CCNNGG	2 cut(s)	67, 178
BseGI	GGATG	2 cut(s)	371, 606
BseJI	GATNNNNATC	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	303, 359
BseNI	ACTGG	4 cut(s)	598, 623, 635, 734
BseRI	GAGGAG	2 cut(s)	162, 498
BseXI	GCAGC	2 cut(s)	135, 187
Bsh1236I	CGCG	1 cut(s)	435
BshNI	GGYRCC	1 cut(s)	466
BsiSI	CCGG	4 cut(s)	69, 81, 135, 438
BslFI	GGGAC	3 cut(s)	202, 431, 636
BslI	CCNNNNNNNGG	1 cut(s)	753
BsmAI	GTCTC	2 cut(s)	457, 552
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	3 cut(s)	202, 431, 636
Bsp143I	GATC	4 cut(s)	303, 420, 534, 584
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	3 cut(s)	84, 315, 460
BspCNI	CTCAG	2 cut(s)	302, 358
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	4 cut(s)	190, 244, 468, 720
BspPI	GGATC	2 cut(s)	298, 592
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	4 cut(s)	598, 623, 635, 734
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	67, 178
BssMI	GATC	4 cut(s)	303, 420, 534, 584
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	709
Bst4CI	ACNGT	5 cut(s)	119, 164, 509, 515, 692
BstACI	GRCGYC	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	247, 439
BstDEI	CTNAG	2 cut(s)	289, 345
BstEII	GGTNACC	2 cut(s)	164, 509
BstF5I	GGATG	2 cut(s)	371, 606
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	4 cut(s)	89, 217, 266, 437
BstKTI	GATC	4 cut(s)	306, 423, 537, 587
BstMAI	GTCTC	2 cut(s)	457, 552
BstMBI	GATC	4 cut(s)	303, 420, 534, 584
BstNI	CCWGG	1 cut(s)	709
BstPI	GGTNACC	2 cut(s)	164, 509
BstSCI	CCNGG	2 cut(s)	67, 707
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	135, 187
BstV2I	GAAGAC	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	371, 606
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	691
Cac8I	GCNNGC	2 cut(s)	247, 439
CaiI	CAGNNNCTG	1 cut(s)	618
CfoI	GCGC	4 cut(s)	89, 217, 266, 437
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	2 cut(s)	65, 137
Csp6I	GTAC	2 cut(s)	184, 210
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	4 cut(s)	90, 403, 471, 715
CviQI	GTAC	2 cut(s)	184, 210
DdeI	CTNAG	2 cut(s)	289, 345
DpnI	GATC	4 cut(s)	305, 422, 536, 586
DpnII	GATC	4 cut(s)	303, 420, 534, 584
DraIII	CACNNNGTG	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	189
Eco72I	CACGTG	1 cut(s)	383
Eco91I	GGTNACC	2 cut(s)	164, 509
EcoO65I	GGTNACC	2 cut(s)	164, 509
EcoRII	CCWGG	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	4 cut(s)	93, 406, 474, 718
FaiI	YATR	8 cut(s)	91, 172, 233, 404, 457, 472, 491, 716
FaqI	GGGAC	3 cut(s)	202, 431, 636
FatI	CATG	4 cut(s)	89, 402, 470, 714
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	3 cut(s)	85, 124, 201
FokI	GGATG	2 cut(s)	378, 613
Fsp4HI	GCNGC	3 cut(s)	85, 124, 201
FspBI	CTAG	5 cut(s)	14, 60, 351, 398, 573
GlaI	GCGC	4 cut(s)	88, 216, 265, 436
GluI	GCNGC	3 cut(s)	85, 124, 201
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	218
HapII	CCGG	4 cut(s)	69, 81, 135, 438
HgaI	GACGC	2 cut(s)	65, 137
HhaI	GCGC	4 cut(s)	89, 217, 266, 437
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	93, 406, 474, 718
Hin6I	GCGC	4 cut(s)	87, 215, 264, 435
HinP1I	GCGC	4 cut(s)	87, 215, 264, 435
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	4 cut(s)	69, 81, 135, 438
HphI	GGTGA	2 cut(s)	304, 503
Hpy166II	GTNNAC	2 cut(s)	386, 498
Hpy188I	TCNGA	1 cut(s)	534
Hpy188III	TCNNGA	2 cut(s)	565, 754
Hpy8I	GTNNAC	2 cut(s)	386, 498
Hpy99I	CGWCG	2 cut(s)	59, 131
HpyAV	CCTTC	2 cut(s)	309, 732
HpyCH4III	ACNGT	5 cut(s)	119, 164, 509, 515, 692
HpyCH4IV	ACGT	2 cut(s)	382, 543
HpyCH4V	TGCA	1 cut(s)	372
HpyF3I	CTNAG	2 cut(s)	289, 345
HpySE526I	ACGT	2 cut(s)	382, 543
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	93, 406, 474, 718
HspAI	GCGC	4 cut(s)	87, 215, 264, 435
KroI	GCCGGC	1 cut(s)	437
KroNI	GCCGGC	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	303, 420, 534, 584
LmnI	GCTCC	3 cut(s)	149, 242, 551
Lsp1109I	GCAGC	2 cut(s)	135, 187
MaeI	CTAG	5 cut(s)	14, 60, 351, 398, 573
MaeII	ACGT	2 cut(s)	382, 543
MaeIII	GTNAC	7 cut(s)	158, 164, 284, 509, 515, 676, 686
MalI	GATC	4 cut(s)	305, 422, 536, 586
MboI	GATC	4 cut(s)	303, 420, 534, 584
MboII	GAAGA	2 cut(s)	403, 769
MluCI	AATT	3 cut(s)	18, 322, 760
MmeI	TCCRAC	1 cut(s)	578
MnlI	CCTC	9 cut(s)	59, 140, 142, 285, 317, 356, 476, 479, 561
MroNI	GCCGGC	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	4 cut(s)	9, 222, 417, 772
MslI	CAYNNNNRTG	1 cut(s)	542
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	4 cut(s)	69, 81, 135, 438
MspR9I	CCNGG	2 cut(s)	69, 709
MvaI	CCWGG	1 cut(s)	709
MvnI	CGCG	1 cut(s)	435
NaeI	GCCGGC	1 cut(s)	439
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	303, 420, 534, 584
NgoMIV	GCCGGC	1 cut(s)	437
NlaIII	CATG	4 cut(s)	93, 406, 474, 718
NlaIV	GGNNCC	4 cut(s)	190, 244, 468, 720
NmuCI	GTSAC	4 cut(s)	284, 509, 676, 686
OliI	CACNNNNGTG	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	86, 125, 202
PmaCI	CACGTG	1 cut(s)	383
PmlI	CACGTG	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	707
PspCI	CACGTG	1 cut(s)	383
PspEI	GGTNACC	2 cut(s)	164, 509
PspGI	CCWGG	1 cut(s)	707
PspN4I	GGNNCC	4 cut(s)	190, 244, 468, 720
PspPI	GGNCC	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	618
RsaI	GTAC	2 cut(s)	185, 211
RsaNI	GTAC	2 cut(s)	184, 210
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	4 cut(s)	9, 222, 417, 772
SatI	GCNGC	3 cut(s)	85, 124, 201
Sau3AI	GATC	4 cut(s)	303, 420, 534, 584
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	69, 709
SetI	ASST	9 cut(s)	154, 171, 258, 295, 385, 399, 497, 546, 749
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	18, 322, 760
SsiI	CCGC	3 cut(s)	84, 315, 460
SspMI	CTAG	5 cut(s)	14, 60, 351, 398, 573
StyD4I	CCNGG	2 cut(s)	67, 707
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	5 cut(s)	119, 164, 509, 515, 692
TaiI	ACGT	2 cut(s)	385, 546
TaqI	TCGA	1 cut(s)	302
TasI	AATT	3 cut(s)	18, 322, 760
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	4 cut(s)	9, 222, 417, 772
Tru9I	TTAA	4 cut(s)	9, 222, 417, 772
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	4 cut(s)	284, 509, 676, 686
TseI	GCWGC	2 cut(s)	123, 200
Tsp45I	GTSAC	4 cut(s)	284, 509, 676, 686
TspGWI	ACGGA	3 cut(s)	375, 604, 662
TspRI	CASTG	1 cut(s)	691
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	760
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	5 cut(s)	14, 60, 351, 398, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.