Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014941

Physical Location & Seq

Genomic Coordinates Forward (+)

9897458 .. 9899148

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTTTCATGTCTGTGCTCTGCATTGTTTCCCTCATTGCATTCTCAACAGTTTTCGTTGACGCAAATGTTCCCGGTGTTTACGCCGGCGGACAATGGAAGAAGGCCCATGCTACTTTCTATGGTGGCGGTGACGCCGCCGGAACCATGCAAGGGGCATGTGGGTACGGAAATCTGTACAGCGACGGCTACGGCATCAACACGGCGGCGCTCAGTACTGCTCTCTTCAACAACGGTTTGAGCTGTGGAGCTTGTTTTGAAATTAAGTGTGTAAACACCAAATGGTGTCACTCTGGTAGTCCCTCGATCTTTGTCACCGCCACCAATTTTTGCCCCCCAAATTGGGCTCTGGCCAATGACAATGGCGGGTGGTGCAACCCTCCTCGCACTCATTTCGATCTCTCTCAGCCCATCTTTCTCAAGATCGCCGAGTACCGCGCCGGCATTGTCCCTGTTGTATATCGCCGGGTGCCATGCCGGAAGCGAGGAGGGATCAGGTTCAAGATCAATGGCAACCCCCACTTCAACTTGGTTCTGATCACCAACGTCGCCGGTGCTGGAGACGTTGTCGGGGTGAGCATCAAAGGGTCCAAAACTGGATGGATGCCAATGACCCGTAACTGGGGGCAGAACTGGCAGTCAGGCACCGTCTTGGTCGGACAGTCTCTCTCCTTCAGTGTCAAAACCAGCGACGGTCGCCACAGTACTTCTTGGAACGTTGTCCCTTCCAATTGGCAGTTTGGTCAATCTTTCACCGGAAAAAACTTCAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006949 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009987 GO:0030054 GO:0030312 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

258

Amino Acids

27.77

Weight (kDa)

9.48

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	37 - 160	3e-08	EXPB1-like domain 1
DPBB_1	PF03330	68 - 154	1.1e-21	Lytic transglycolase
Expansin_C	PF01357	165 - 242	5.4e-28	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39700 AT3G55500
fragaria_vesca	FvH4_7g22700
malus_domestica	MD01G1135600.v1.1 MD07G1200300.v1.1
prunus_persica	Prupe.2G237000_v2.0.a1
pyrus_communis	pycom01g15640 pycom07g18720
rosa_chinensis	RchiOBHm_Chr1g0367791
rosa_laevigata	RLG00000027263
rosa_multiflora	Rmu_ssc0000395.1_g000022
rosa_roxburghii	Rroxscaffold_4G00289220
rosa_rugosa	Rorug01G0336600
rosa_samantha	Rh1BG305700 Rh1CG321300
rosa_wichuraiana	Rw1G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	469, 644
AccII	CGCG	1 cut(s)	438
AciI	CCGC	7 cut(s)	90, 129, 138, 206, 318, 366, 436
AclI	AACGTT	1 cut(s)	717
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	351
AcuI	CTGAAG	2 cut(s)	658, 751
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	5 cut(s)	167, 179, 217, 434, 706
AfiI	CCNNNNNNNGG	5 cut(s)	153, 342, 343, 621, 622
AgsI	TTSAA	4 cut(s)	229, 260, 502, 526
AluBI	AGCT	2 cut(s)	243, 251
AluI	AGCT	2 cut(s)	243, 251
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	555, 669
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	1 cut(s)	774
AoxI	GGCC	2 cut(s)	105, 351
AspLEI	GCGC	2 cut(s)	211, 440
AspS9I	GGNCC	2 cut(s)	106, 588
AsuC2I	CCSGG	2 cut(s)	75, 467
AsuHPI	GGTGA	5 cut(s)	143, 307, 532, 586, 745
AvaII	GGWCC	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	2 cut(s)	469, 644
BanII	GRGCYC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	2 cut(s)	419, 594
BceAI	ACGGC	3 cut(s)	202, 208, 219
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BclI	TGATCA	1 cut(s)	537
BcnI	CCSGG	2 cut(s)	75, 467
BcoDI	GTCTC	2 cut(s)	555, 669
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	2 cut(s)	138, 207
BlsI	GCNGC	2 cut(s)	139, 208
BmcAI	AGTACT	2 cut(s)	217, 706
Bme1390I	CCNGG	2 cut(s)	75, 467
Bme18I	GGWCC	1 cut(s)	588
BmgT120I	GGNCC	2 cut(s)	106, 588
BmiI	GGNNCC	4 cut(s)	145, 471, 589, 646
BmrFI	CCNGG	2 cut(s)	75, 467
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	3 cut(s)	204, 588, 594
BmuI	ACTGGG	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	2 cut(s)	75, 467
BsaHI	GRCGYC	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	755
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	5 cut(s)	153, 342, 343, 621, 622
Bse118I	RCCGGY	3 cut(s)	86, 440, 551
Bse1I	ACTGG	3 cut(s)	601, 626, 638
Bse3DI	GCAATG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	605, 609
BseLI	CCNNNNNNNGG	5 cut(s)	153, 342, 343, 621, 622
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	226, 419
BseNI	ACTGG	3 cut(s)	601, 626, 638
BseRI	GAGGAG	2 cut(s)	372, 501
Bsh1236I	CGCG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	2 cut(s)	107, 353
BshNI	GGYRCC	2 cut(s)	469, 644
BsiEI	CGRYCG	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	8 cut(s)	75, 87, 141, 441, 466, 478, 552, 756
BslFI	GGGAC	3 cut(s)	285, 434, 707
BslI	CCNNNNNNNGG	5 cut(s)	153, 342, 343, 621, 622
BsmAI	GTCTC	2 cut(s)	555, 669
BsmBI	CGTCTC	1 cut(s)	555
BsmFI	GGGAC	3 cut(s)	285, 434, 707
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	107, 353
Bsp1286I	GDGCHC	2 cut(s)	21, 349
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	6 cut(s)	306, 397, 423, 492, 504, 537
BspACI	CCGC	7 cut(s)	90, 129, 138, 206, 318, 366, 436
BspANI	GGCC	2 cut(s)	107, 353
BspCNI	CTCAG	2 cut(s)	225, 418
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	4 cut(s)	145, 471, 589, 646
BspPI	GGATC	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	469, 644
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	3 cut(s)	86, 440, 551
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	601, 626, 638
BssAI	RCCGGY	3 cut(s)	86, 440, 551
BssMI	GATC	6 cut(s)	306, 397, 423, 492, 504, 537
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	6 cut(s)	52, 236, 649, 663, 695, 704
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	88, 442
BstDEI	CTNAG	2 cut(s)	212, 405
BstF5I	GGATG	2 cut(s)	605, 609
BstFNI	CGCG	1 cut(s)	438
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	211, 440
BstKTI	GATC	6 cut(s)	309, 400, 426, 495, 507, 540
BstMAI	GTCTC	2 cut(s)	555, 669
BstMBI	GATC	6 cut(s)	306, 397, 423, 492, 504, 537
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	3 cut(s)	372, 634, 696
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	73, 465
BstUI	CGCG	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	107, 353
BtsCI	GGATG	2 cut(s)	605, 609
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	88, 442
CaiI	CAGNNNCTG	1 cut(s)	774
CfoI	GCGC	2 cut(s)	211, 440
Cfr10I	RCCGGY	3 cut(s)	86, 440, 551
Cfr13I	GGNCC	2 cut(s)	106, 588
CseI	GACGC	2 cut(s)	71, 143
Csp6I	GTAC	5 cut(s)	166, 178, 216, 433, 705
CviAII	CATG	5 cut(s)	10, 110, 148, 159, 474
CviJI	RGCY	8 cut(s)	5, 107, 189, 243, 251, 347, 353, 409
CviKI_1	RGCY	8 cut(s)	5, 107, 189, 243, 251, 347, 353, 409
CviQI	GTAC	5 cut(s)	166, 178, 216, 433, 705
DdeI	CTNAG	2 cut(s)	212, 405
DpnI	GATC	6 cut(s)	308, 399, 425, 494, 506, 539
DpnII	GATC	6 cut(s)	306, 397, 423, 492, 504, 537
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	588
Eco57I	CTGAAG	2 cut(s)	658, 751
EcoT38I	GRGCYC	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	555
FaeI	CATG	5 cut(s)	13, 113, 151, 162, 477
FaiI	YATR	7 cut(s)	11, 111, 123, 149, 160, 460, 475
FaqI	GGGAC	3 cut(s)	285, 434, 707
FatI	CATG	5 cut(s)	9, 109, 147, 158, 473
FauI	CCCGC	1 cut(s)	359
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	138, 207
FokI	GGATG	2 cut(s)	612, 616
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	2 cut(s)	138, 207
GlaI	GCGC	2 cut(s)	210, 439
GluI	GCNGC	2 cut(s)	138, 207
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	107, 353
HapII	CCGG	8 cut(s)	75, 87, 141, 441, 466, 478, 552, 756
HgaI	GACGC	2 cut(s)	71, 143
HhaI	GCGC	2 cut(s)	211, 440
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	5 cut(s)	13, 113, 151, 162, 477
Hin6I	GCGC	2 cut(s)	209, 438
HinP1I	GCGC	2 cut(s)	209, 438
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	771
HpaII	CCGG	8 cut(s)	75, 87, 141, 441, 466, 478, 552, 756
HphI	GGTGA	5 cut(s)	143, 307, 532, 586, 745
Hpy166II	GTNNAC	3 cut(s)	61, 82, 274
Hpy188I	TCNGA	4 cut(s)	537, 659, 770, 776
Hpy188III	TCNNGA	2 cut(s)	421, 502
Hpy8I	GTNNAC	3 cut(s)	61, 82, 274
Hpy99I	CGWCG	3 cut(s)	188, 551, 695
HpyAV	CCTTC	3 cut(s)	97, 682, 735
HpyCH4III	ACNGT	6 cut(s)	52, 236, 649, 663, 695, 704
HpyCH4IV	ACGT	3 cut(s)	546, 564, 717
HpyCH4V	TGCA	4 cut(s)	24, 41, 151, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	372, 634, 696
HpyF3I	CTNAG	2 cut(s)	212, 405
HpySE526I	ACGT	3 cut(s)	546, 564, 717
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	5 cut(s)	13, 113, 151, 162, 477
HspAI	GCGC	2 cut(s)	209, 438
KroI	GCCGGC	2 cut(s)	86, 440
KroNI	GCCGGC	2 cut(s)	88, 442
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	6 cut(s)	306, 397, 423, 492, 504, 537
LmnI	GCTCC	1 cut(s)	248
LweI	GCATC	3 cut(s)	204, 588, 594
MaeII	ACGT	3 cut(s)	546, 564, 717
MaeIII	GTNAC	4 cut(s)	131, 287, 313, 617
MalI	GATC	6 cut(s)	308, 399, 425, 494, 506, 539
MboI	GATC	6 cut(s)	306, 397, 423, 492, 504, 537
MboII	GAAGA	2 cut(s)	112, 217
MfeI	CAATTG	1 cut(s)	730
MhlI	GDGCHC	2 cut(s)	21, 349
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	4 cut(s)	261, 325, 340, 730
MluNI	TGGCCA	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	6 cut(s)	44, 313, 390, 393, 479, 482
Mox20I	TGGCCA	1 cut(s)	353
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	2 cut(s)	86, 440
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	8 cut(s)	75, 87, 141, 441, 466, 478, 552, 756
MspR9I	CCNGG	2 cut(s)	75, 467
MunI	CAATTG	1 cut(s)	730
Mva1269I	GAATGC	1 cut(s)	41
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	3 cut(s)	372, 634, 696
NaeI	GCCGGC	2 cut(s)	88, 442
NciI	CCSGG	2 cut(s)	75, 467
NdeII	GATC	6 cut(s)	306, 397, 423, 492, 504, 537
NgoMIV	GCCGGC	2 cut(s)	86, 440
NlaIII	CATG	5 cut(s)	13, 113, 151, 162, 477
NlaIV	GGNNCC	4 cut(s)	145, 471, 589, 646
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	3 cut(s)	131, 287, 313
NspI	RCATGY	1 cut(s)	162
PctI	GAATGC	1 cut(s)	41
PdiI	GCCGGC	2 cut(s)	88, 442
PflFI	GACNNNGTC	1 cut(s)	566
PkrI	GCNGC	2 cut(s)	139, 208
Psp1406I	AACGTT	1 cut(s)	717
PspN4I	GGNNCC	4 cut(s)	145, 471, 589, 646
PspPI	GGNCC	2 cut(s)	106, 588
PstNI	CAGNNNCTG	1 cut(s)	774
PsyI	GACNNNGTC	1 cut(s)	566
RsaI	GTAC	5 cut(s)	167, 179, 217, 434, 706
RsaNI	GTAC	5 cut(s)	166, 178, 216, 433, 705
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	138, 207
Sau3AI	GATC	6 cut(s)	306, 397, 423, 492, 504, 537
Sau96I	GGNCC	2 cut(s)	106, 588
ScaI	AGTACT	2 cut(s)	217, 706
ScrFI	CCNGG	2 cut(s)	75, 467
SduI	GDGCHC	2 cut(s)	21, 349
SetI	ASST	6 cut(s)	245, 253, 500, 549, 567, 720
SfaNI	GCATC	3 cut(s)	204, 588, 594
SgrAI	CRCCGGYG	2 cut(s)	86, 551
SinI	GGWCC	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	261, 325, 340, 730
SsiI	CCGC	7 cut(s)	90, 129, 138, 206, 318, 366, 436
StyD4I	CCNGG	2 cut(s)	73, 465
TaaI	ACNGT	6 cut(s)	52, 236, 649, 663, 695, 704
TaiI	ACGT	3 cut(s)	549, 567, 720
TaqI	TCGA	2 cut(s)	305, 396
TasI	AATT	4 cut(s)	261, 325, 340, 730
TatI	WGTACW	3 cut(s)	177, 215, 704
TauI	GCSGC	2 cut(s)	140, 209
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	3 cut(s)	131, 287, 313
Tsp45I	GTSAC	3 cut(s)	131, 287, 313
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	588
XceI	RCATGY	1 cut(s)	162
ZrmI	AGTACT	2 cut(s)	217, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.