Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014941

Physical Location & Seq

Genomic Coordinates Reverse (-)

17862852 .. 17865273

Gene Structure 2422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTTCCATGACTGTGCTCTGCATTGTTTCCCTCATTGCATTCTCCACAGCTTTCGTTGTCGACGCAACTTCTCATGTCGGGCCATGGAAGAGCGCCCATGCTACTTTCTATGGTGGTGGTGACGCCACCGGAACTATGGGAGGGGCATGTGGGTACGGAAATCTTTACAGCGATGGCTATGGCATCAACACGGCGGCGCTGAGCACTGCTCTCTTCAACAATGGTTTAAGCTGTGGAGCTTGTTTTGAACTAAAGTGCGTAAACACCAAATGGTGCCACTCTGGTCGTCCCTCAATCTTTGTTACCGCCACCAATTTTTGCCCCCCAAATTGGGCTCAAGCGAACGACAATGGCGGCTGGTGCAACCCTCCTCGCGCTCACTTTGATCTCTCCCAGCCTATCTTCCTCAAGATCGCCGAGTACAGTGCCGGCATTGTCCCTGTTGCATATCGCCGGGTGCCATGCCGGAAGAGAGGAGGAATGAGGTTCAAGATCAGTGGAAACCCCTACTTCAACTTGGTTCTGATCACCAACGTCGCCGGTGCAGGAGACATTGTGAAGGTGAGCGTCAAAGGTTCCAAAACTGGATGGATGCCAATGAGTCGTAACTGGGGGCAGAACTGGCAGATAGACACCGTCTTGGTCGGACAGTCGCTCTCCTTCAGTGTCAAAACCAGTGACGGTCGCACCACTACTTCTTGGAACGTCACTCCTTCCAAATGGCAGTTTGGTCAATCTTACACTGGAAACAATTTCAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006949 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009987 GO:0030054 GO:0030312 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

256

Amino Acids

27.39

Weight (kDa)

9.28

Isoelectric Point (pI)

20.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	34 - 157	8.4e-09	EXPB1-like domain 1
DPBB_1	PF03330	65 - 151	2.9e-21	Lytic transglycolase
Expansin_C	PF01357	162 - 239	3.7e-29	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39700 AT3G55500
fragaria_vesca	FvH4_7g22700
malus_domestica	MD01G1135600.v1.1 MD07G1200300.v1.1
prunus_persica	Prupe.2G237000_v2.0.a1
pyrus_communis	pycom01g15640 pycom07g18720
rosa_chinensis	RchiOBHm_Chr1g0367791
rosa_laevigata	RLG00000027263
rosa_multiflora	Rmu_ssc0000395.1_g000022
rosa_roxburghii	Rroxscaffold_4G00289220
rosa_rugosa	Rorug01G0336600
rosa_samantha	Rh1BG305700 Rh1CG321300
rosa_wichuraiana	Rw1G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	276, 460
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	197, 309, 357
AcuI	CTGAAG	1 cut(s)	649
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	158, 425
AfiI	CCNNNNNNNGG	2 cut(s)	333, 334
AgsI	TTSAA	4 cut(s)	220, 251, 493, 517
AluBI	AGCT	3 cut(s)	53, 234, 242
AluI	AGCT	3 cut(s)	53, 234, 242
Alw21I	GWGCWC	2 cut(s)	21, 209
Alw26I	GTCTC	1 cut(s)	546
AlwNI	CAGNNNCTG	1 cut(s)	765
AoxI	GGCC	1 cut(s)	83
AspLEI	GCGC	3 cut(s)	98, 202, 380
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	134, 523, 577
BanI	GGYRCC	2 cut(s)	276, 460
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	2 cut(s)	21, 209
BccI	CCATC	2 cut(s)	170, 585
BceAI	ACGGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	546
BfoI	RGCGCY	2 cut(s)	99, 203
BisI	GCNGC	2 cut(s)	198, 358
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	2 cut(s)	199, 359
Bme1390I	CCNGG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	3 cut(s)	278, 462, 580
BmrFI	CCNGG	1 cut(s)	458
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	195, 585
BmuI	ACTGGG	1 cut(s)	622
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	324, 395
BpuMI	CCSGG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 334
Bse118I	RCCGGY	2 cut(s)	431, 542
Bse1I	ACTGG	5 cut(s)	592, 617, 629, 678, 751
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	596, 600
BseLI	CCNNNNNNNGG	2 cut(s)	333, 334
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	5 cut(s)	592, 617, 629, 678, 751
BseRI	GAGGAG	2 cut(s)	363, 492
BseYI	CCCAGC	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	688
BshFI	GGCC	1 cut(s)	85
BshNI	GGYRCC	2 cut(s)	276, 460
BsiEI	CGRYCG	1 cut(s)	688
BsiHKAI	GWGCWC	2 cut(s)	21, 209
BsiSI	CCGG	5 cut(s)	132, 432, 457, 469, 543
BslFI	GGGAC	2 cut(s)	276, 425
BslI	CCNNNNNNNGG	2 cut(s)	333, 334
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	2 cut(s)	276, 425
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	21, 209, 340
Bsp143I	GATC	4 cut(s)	388, 414, 495, 528
Bsp1720I	GCTNAGC	1 cut(s)	203
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	3 cut(s)	197, 309, 357
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	278, 462, 580
BspQI	GCTCTTC	1 cut(s)	86
BspT107I	GGYRCC	2 cut(s)	276, 460
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	2 cut(s)	431, 542
BsrI	ACTGG	5 cut(s)	592, 617, 629, 678, 751
BssAI	RCCGGY	2 cut(s)	431, 542
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	4 cut(s)	388, 414, 495, 528
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	5 cut(s)	16, 428, 640, 654, 686
Bst6I	CTCTTC	3 cut(s)	86, 221, 467
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	203
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	596, 600
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	2 cut(s)	99, 203
BstHHI	GCGC	3 cut(s)	98, 202, 380
BstKTI	GATC	4 cut(s)	391, 417, 498, 531
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	4 cut(s)	388, 414, 495, 528
BstMCI	CGRYCG	1 cut(s)	688
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 625
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	596, 600
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	7 cut(s)	207, 433, 505, 673, 685, 744, 766
Cac8I	GCNNGC	1 cut(s)	433
CaiI	CAGNNNCTG	1 cut(s)	765
CfoI	GCGC	3 cut(s)	98, 202, 380
Cfr10I	RCCGGY	2 cut(s)	431, 542
Cfr13I	GGNCC	1 cut(s)	83
CseI	GACGC	3 cut(s)	74, 134, 559
Csp6I	GTAC	2 cut(s)	157, 424
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	6 cut(s)	10, 77, 87, 101, 150, 465
CviJI	RGCY	9 cut(s)	5, 53, 85, 180, 234, 242, 338, 360, 400
CviKI_1	RGCY	9 cut(s)	5, 53, 85, 180, 234, 242, 338, 360, 400
CviQI	GTAC	2 cut(s)	157, 424
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	4 cut(s)	390, 416, 497, 530
DpnII	GATC	4 cut(s)	388, 414, 495, 528
Eam1104I	CTCTTC	3 cut(s)	86, 221, 467
EarI	CTCTTC	3 cut(s)	86, 221, 467
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	6 cut(s)	13, 80, 90, 104, 153, 468
FaqI	GGGAC	2 cut(s)	276, 425
FatI	CATG	6 cut(s)	9, 76, 86, 100, 149, 464
FbaI	TGATCA	1 cut(s)	528
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	198, 358
FokI	GGATG	2 cut(s)	603, 607
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	198, 358
GlaI	GCGC	3 cut(s)	97, 201, 379
GluI	GCNGC	2 cut(s)	198, 358
GsaI	CCCAGC	1 cut(s)	400
HaeII	RGCGCY	2 cut(s)	99, 203
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	5 cut(s)	132, 432, 457, 469, 543
HgaI	GACGC	3 cut(s)	74, 134, 559
HhaI	GCGC	3 cut(s)	98, 202, 380
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	6 cut(s)	13, 80, 90, 104, 153, 468
Hin6I	GCGC	3 cut(s)	96, 200, 378
HinP1I	GCGC	3 cut(s)	96, 200, 378
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	604
HpaII	CCGG	5 cut(s)	132, 432, 457, 469, 543
HphI	GGTGA	3 cut(s)	134, 523, 577
Hpy166II	GTNNAC	2 cut(s)	64, 265
Hpy188I	TCNGA	3 cut(s)	528, 650, 767
Hpy188III	TCNNGA	2 cut(s)	412, 493
Hpy8I	GTNNAC	2 cut(s)	64, 265
Hpy99I	CGWCG	2 cut(s)	68, 542
HpyAV	CCTTC	3 cut(s)	556, 673, 726
HpyCH4III	ACNGT	5 cut(s)	16, 428, 640, 654, 686
HpyCH4IV	ACGT	2 cut(s)	537, 708
HpyCH4V	TGCA	5 cut(s)	24, 41, 366, 449, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 625
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	2 cut(s)	537, 708
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	6 cut(s)	13, 80, 90, 104, 153, 468
HspAI	GCGC	3 cut(s)	96, 200, 378
KroI	GCCGGC	1 cut(s)	431
KroNI	GCCGGC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	388, 414, 495, 528
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	239
LweI	GCATC	2 cut(s)	195, 585
MaeII	ACGT	2 cut(s)	537, 708
MaeIII	GTNAC	5 cut(s)	122, 304, 608, 680, 709
MalI	GATC	4 cut(s)	390, 416, 497, 530
MboI	GATC	4 cut(s)	388, 414, 495, 528
MboII	GAAGA	4 cut(s)	103, 208, 397, 484
MhlI	GDGCHC	3 cut(s)	21, 209, 340
MluCI	AATT	3 cut(s)	316, 331, 754
MlyI	GAGTC	1 cut(s)	613
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	9 cut(s)	44, 137, 304, 381, 384, 419, 470, 473, 480
MroNI	GCCGGC	1 cut(s)	431
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	5 cut(s)	132, 432, 457, 469, 543
MspR9I	CCNGG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	41
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	363, 625
NaeI	GCCGGC	1 cut(s)	433
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	86
NdeII	GATC	4 cut(s)	388, 414, 495, 528
NgoMIV	GCCGGC	1 cut(s)	431
NlaIII	CATG	6 cut(s)	13, 80, 90, 104, 153, 468
NlaIV	GGNNCC	3 cut(s)	278, 462, 580
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	3 cut(s)	122, 680, 709
NspI	RCATGY	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	433
PflFI	GACNNNGTC	1 cut(s)	638
PkrI	GCNGC	2 cut(s)	199, 359
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
PspFI	CCCAGC	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	278, 462, 580
PspPI	GGNCC	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	765
PsyI	GACNNNGTC	1 cut(s)	638
RsaI	GTAC	2 cut(s)	158, 425
RsaNI	GTAC	2 cut(s)	157, 424
RseI	CAYNNNNRTG	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	198, 358
Sau3AI	GATC	4 cut(s)	388, 414, 495, 528
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	3 cut(s)	21, 209, 340
SetI	ASST	8 cut(s)	55, 236, 244, 491, 540, 567, 580, 711
SfaNI	GCATC	2 cut(s)	195, 585
SgrAI	CRCCGGYG	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	339, 410
SmoI	CTYRAG	2 cut(s)	339, 410
Sse9I	AATT	3 cut(s)	316, 331, 754
SsiI	CCGC	3 cut(s)	197, 309, 357
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	5 cut(s)	16, 428, 640, 654, 686
TaiI	ACGT	2 cut(s)	540, 711
TaqI	TCGA	1 cut(s)	63
TasI	AATT	3 cut(s)	316, 331, 754
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	2 cut(s)	200, 360
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	7 cut(s)	214, 433, 505, 673, 685, 751, 766
TseFI	GTSAC	3 cut(s)	122, 680, 709
Tsp45I	GTSAC	3 cut(s)	122, 680, 709
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	7 cut(s)	214, 433, 505, 673, 685, 751, 766
Tth111I	GACNNNGTC	1 cut(s)	638
XceI	RCATGY	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.