Rorug01G0336600

Pollen allergen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014941
Physical Location & Seq
Forward (+)
45478752 .. 45479084
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0336600.1

Sequence Viewer

Length: 333 bp
ATGTTGCCTGAGCTGCCTAATGCTCTTGATCTAGAACCTAGATCACATCAGACTCAGTTCCAGCAAATCAGTTATTGGAAGAATAACCCTAACGTCATCGTGTCTAAGGATTGGACTGGAAATTTCCAAAAGATAATGCAGGCAGTAGAGGCTGTACCGGATCATAGCCGGAAGCGTTTTGCGATCTTGGTGAAGAGAGGAGTTTACAAGGAAAATGTGGATATCAATGTGAAAAAGACTAATTTGGTTTTGATTGGAGAGGGCATGGACGTTACTACCATAACTGGACATAAGAGTAATGGTACTGGTTGGCGTACATTGTTGCCGAGGTAA

Protein Analysis

110

Amino Acids

12.57

Weight (kDa)

9.75

Isoelectric Point (pI)

17.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 31 - 106 3.5e-22 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39700 AT3G55500
fragaria_vesca FvH4_7g22700
malus_domestica MD01G1135600.v1.1 MD07G1200300.v1.1
prunus_persica Prupe.2G237000_v2.0.a1
pyrus_communis pycom01g15640 pycom07g18720
rosa_chinensis RchiOBHm_Chr1g0367791
rosa_laevigata RLG00000027263
rosa_multiflora Rmu_ssc0000395.1_g000022
rosa_roxburghii Rroxscaffold_4G00289220
rosa_rugosa Rorug01G0336600
rosa_samantha Rh1BG305700 Rh1CG321300
rosa_wichuraiana Rw1G030600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 3 cut(s) 156, 304, 316
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwI GGATC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 202
BfaI CTAG 2 cut(s) 32, 39
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 121, 289, 310
BseDI CCNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 3 cut(s) 121, 289, 310
BseRI GAGGAG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 158, 169
Bsp143I GATC 4 cut(s) 28, 41, 160, 183
BspCNI CTCAG 1 cut(s) 67
BspPI GGATC 1 cut(s) 168
BsrI ACTGG 3 cut(s) 121, 289, 310
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 4 cut(s) 28, 41, 160, 183
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 3 cut(s) 9, 54, 105
BstKTI GATC 4 cut(s) 31, 44, 163, 186
BstMBI GATC 4 cut(s) 28, 41, 160, 183
BstMWI GCNNNNNNNGC 2 cut(s) 13, 149
Cac8I GCNNGC 1 cut(s) 141
Csp6I GTAC 3 cut(s) 155, 303, 315
CviAII CATG 1 cut(s) 265
CviJI RGCY 3 cut(s) 13, 152, 168
CviKI_1 RGCY 3 cut(s) 13, 152, 168
CviQI GTAC 3 cut(s) 155, 303, 315
DdeI CTNAG 3 cut(s) 9, 54, 105
DpnI GATC 4 cut(s) 30, 43, 162, 185
DpnII GATC 4 cut(s) 28, 41, 160, 183
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco32I GATATC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 223
FaeI CATG 1 cut(s) 268
FaiI YATR 4 cut(s) 165, 266, 281, 291
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 2 cut(s) 32, 39
GluI GCNGC 1 cut(s) 14
HapII CCGG 2 cut(s) 158, 169
Hin1II CATG 1 cut(s) 268
HinfI GANTC 1 cut(s) 52
HpaII CCGG 2 cut(s) 158, 169
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 26, 32
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 93, 270
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 149
HpyF3I CTNAG 3 cut(s) 9, 54, 105
HpySE526I ACGT 2 cut(s) 93, 270
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 4 cut(s) 28, 41, 160, 183
LpnPI CCDG 8 cut(s) 21, 74, 102, 125, 171, 182, 270, 291
MaeI CTAG 2 cut(s) 32, 39
MaeII ACGT 2 cut(s) 93, 270
MaeIII GTNAC 1 cut(s) 271
MalI GATC 4 cut(s) 30, 43, 162, 185
MboI GATC 4 cut(s) 28, 41, 160, 183
MboII GAAGA 2 cut(s) 91, 205
MluCI AATT 2 cut(s) 121, 241
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 4 cut(s) 142, 191, 253, 321
MspI CCGG 2 cut(s) 158, 169
MwoI GCNNNNNNNGC 2 cut(s) 13, 149
NdeII GATC 4 cut(s) 28, 41, 160, 183
NlaIII CATG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
RsaI GTAC 3 cut(s) 156, 304, 316
RsaNI GTAC 3 cut(s) 155, 303, 315
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 4 cut(s) 28, 41, 160, 183
SchI GAGTC 1 cut(s) 46
SetI ASST 5 cut(s) 15, 40, 96, 273, 332
Sse9I AATT 2 cut(s) 121, 241
SspMI CTAG 2 cut(s) 32, 39
TaiI ACGT 2 cut(s) 96, 273
TasI AATT 2 cut(s) 121, 241
TseI GCWGC 1 cut(s) 13
XapI RAATTY 1 cut(s) 121
XbaI TCTAGA 1 cut(s) 31
XspI CTAG 2 cut(s) 32, 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.