Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014941

Physical Location & Seq

Genomic Coordinates Reverse (-)

27828658 .. 27830634

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1200300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCCGCCATGGCTCCTCTGCTCTGCATTGTTTCTCTCATGGCACTGGCGAGTACCATTGTAGTCGACGCCAGAATTCCTGGTGTTTACACTGGCGGCGCGTGGCAGGATGCTCATGCTACTTTCTATGGTGGCAGTGATGCCTCTGGAACTATGGGAGGAGCTTGTGGGTACGGAAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCTGCGCTGAGCACGGCTCTCTTTAACAGCGGCTTGAGCTGTGGAGCTTGCTTCGAACTCAAGTGCGCCAATCAGCCACAGTGGTGCAAATCTGGCAGTCCCTCCATTTTTGTCACGGCCACAAACTTTTGCCCGCCGAACTTCGCCCAGCCCAGTGACGATGGCGGCTGGTGCAACCCGCCTCGCACCCACTTCGATCTCGCCATGCCCATGTTCCTCAAGATCGCTGAGTACCGCGCCGGCATTGTCCCCGTTTCTTACCGCCGAGTGCCATGCCGGAAGCAAGGTGGAATCAGGTTCACAATCAACGGTCACAAGTACTTCAACTTGGTTCTGATCCACAACGTCGCGGGCGCGGGGGATATAGTGAAGGCGTACGTTAAAGGGACGAACACTCCGTGGATGAGCCTGAGCCGCAACTGGGGTCAGAACTGGCAGTCTAACTCAGTCCTGGTTGGACAGTCGCTCTCCTTCAGGGTGACAGGCAGTGACCGACGCACCTCCACCTCCTGGAACATCGTCCCTTCCAACTGGCAGTTCGGCCAAACCTTCACCGGCAAGAACTTCAGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006949 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009987 GO:0030054 GO:0030312 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

262

Amino Acids

28.14

Weight (kDa)

9.32

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	40 - 164	4.5e-09	EXPB1-like domain 1
DPBB_1	PF03330	70 - 157	8.4e-22	Lytic transglycolase
Expansin_C	PF01357	168 - 245	2.1e-27	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39700 AT3G55500
fragaria_vesca	FvH4_7g22700
malus_domestica	MD01G1135600.v1.1 MD07G1200300.v1.1
prunus_persica	Prupe.2G237000_v2.0.a1
pyrus_communis	pycom01g15640 pycom07g18720
rosa_chinensis	RchiOBHm_Chr1g0367791
rosa_laevigata	RLG00000027263
rosa_multiflora	Rmu_ssc0000395.1_g000022
rosa_roxburghii	Rroxscaffold_4G00289220
rosa_rugosa	Rorug01G0336600
rosa_samantha	Rh1BG305700 Rh1CG321300
rosa_wichuraiana	Rw1G030600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	720
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	4 cut(s)	101, 447, 560, 566
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	3 cut(s)	3, 327, 751
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	2 cut(s)	667, 760
AcyI	GRCGYC	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	609
AfaI	GTAC	6 cut(s)	55, 173, 185, 443, 530, 587
AfiI	CCNNNNNNNGG	2 cut(s)	631, 720
AgsI	TTSAA	1 cut(s)	535
AjnI	CCWGG	4 cut(s)	79, 189, 660, 719
AjuI	GAANNNNNNNTTGG	2 cut(s)	731, 763
AleI	CACNNNNGTG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	164, 249, 257
AluI	AGCT	3 cut(s)	164, 249, 257
Alw21I	GWGCWC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	3 cut(s)	3, 327, 751
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	75
AspLEI	GCGC	5 cut(s)	101, 217, 278, 449, 566
AsuHPI	GGTGA	2 cut(s)	700, 754
AsuII	TTCGAA	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	3 cut(s)	225, 240, 342
BcgI	CGANNNNNNTGC	4 cut(s)	385, 419, 465, 499
BciT130I	CCWGG	4 cut(s)	81, 191, 662, 721
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	6 cut(s)	6, 97, 213, 241, 376, 625
BlpI	GCTNAGC	1 cut(s)	218
BlsI	GCNGC	6 cut(s)	7, 98, 214, 242, 377, 626
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	4 cut(s)	81, 191, 662, 721
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	4 cut(s)	81, 191, 662, 721
BmrI	ACTGGG	2 cut(s)	357, 640
BmsI	GCATC	2 cut(s)	100, 130
BmuI	ACTGGG	2 cut(s)	357, 640
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
Bpu10I	CCTNAGC	1 cut(s)	620
Bpu1102I	GCTNAGC	1 cut(s)	218
Bpu14I	TTCGAA	1 cut(s)	264
BpuEI	CTTGAG	3 cut(s)	254, 265, 413
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	9, 190, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 720
Bse118I	RCCGGY	2 cut(s)	449, 764
Bse1I	ACTGG	6 cut(s)	51, 97, 363, 635, 647, 746
BseBI	CCWGG	4 cut(s)	81, 191, 662, 721
BseDI	CCNNGG	3 cut(s)	9, 190, 608
BseGI	GGATG	2 cut(s)	115, 618
BseLI	CCNNNNNNNGG	2 cut(s)	631, 720
BseMII	CTCAG	4 cut(s)	209, 429, 611, 669
BseNI	ACTGG	6 cut(s)	51, 97, 363, 635, 647, 746
BseRI	GAGGAG	2 cut(s)	6, 174
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	357
Bsh1236I	CGCG	4 cut(s)	101, 447, 560, 566
BshFI	GGCC	3 cut(s)	5, 329, 753
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	450, 487, 765
BsiWI	CGTACG	1 cut(s)	585
BslFI	GGGAC	4 cut(s)	294, 443, 610, 716
BslI	CCNNNNNNNGG	2 cut(s)	631, 720
BsmFI	GGGAC	4 cut(s)	294, 443, 610, 716
BsnI	GGCC	3 cut(s)	5, 329, 753
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	406, 432, 546
Bsp1720I	GCTNAGC	1 cut(s)	218
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	3 cut(s)	5, 329, 753
BspCNI	CTCAG	4 cut(s)	210, 430, 612, 668
BspFNI	CGCG	4 cut(s)	101, 447, 560, 566
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	541
BspT104I	TTCGAA	1 cut(s)	264
BsrFI	RCCGGY	2 cut(s)	449, 764
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	6 cut(s)	51, 97, 363, 635, 647, 746
BssAI	RCCGGY	2 cut(s)	449, 764
BssECI	CCNNGG	3 cut(s)	9, 190, 608
BssMI	GATC	3 cut(s)	406, 432, 546
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	4 cut(s)	81, 191, 662, 721
Bst4CI	ACNGT	3 cut(s)	291, 521, 672
BstACI	GRCGYC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	4 cut(s)	259, 344, 451, 562
BstDEI	CTNAG	4 cut(s)	218, 438, 620, 655
BstDSI	CCRYGG	2 cut(s)	9, 608
BstF5I	GGATG	2 cut(s)	115, 618
BstFNI	CGCG	4 cut(s)	101, 447, 560, 566
BstHHI	GCGC	5 cut(s)	101, 217, 278, 449, 566
BstKTI	GATC	3 cut(s)	409, 435, 549
BstMBI	GATC	3 cut(s)	406, 432, 546
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 246, 303, 381, 624
BstNI	CCWGG	4 cut(s)	81, 191, 662, 721
BstSCI	CCNGG	4 cut(s)	79, 189, 660, 719
BstUI	CGCG	4 cut(s)	101, 447, 560, 566
BstV1I	GCAGC	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	5, 329, 753
BtgI	CCRYGG	2 cut(s)	9, 608
BtsCI	GGATG	2 cut(s)	115, 618
BtsI	GCAGTG	2 cut(s)	142, 703
BtsIMutI	CAGTG	6 cut(s)	44, 90, 142, 296, 370, 703
Cac8I	GCNNGC	4 cut(s)	259, 344, 451, 562
CfoI	GCGC	5 cut(s)	101, 217, 278, 449, 566
Cfr10I	RCCGGY	2 cut(s)	449, 764
CseI	GACGC	2 cut(s)	77, 714
Csp6I	GTAC	6 cut(s)	54, 172, 184, 442, 529, 586
CviAII	CATG	6 cut(s)	10, 40, 116, 415, 421, 483
CviQI	GTAC	6 cut(s)	54, 172, 184, 442, 529, 586
DdeI	CTNAG	4 cut(s)	218, 438, 620, 655
DpnI	GATC	3 cut(s)	408, 434, 548
DpnII	GATC	3 cut(s)	406, 432, 546
DraIII	CACNNNGTG	1 cut(s)	609
EaeI	YGGCCR	3 cut(s)	3, 327, 751
Eco130I	CCWWGG	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	667, 760
EcoRI	GAATTC	1 cut(s)	75
EcoRII	CCWGG	4 cut(s)	79, 189, 660, 719
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	6 cut(s)	13, 43, 119, 418, 424, 486
FaiI	YATR	9 cut(s)	11, 41, 117, 129, 155, 416, 422, 484, 575
FaqI	GGGAC	4 cut(s)	294, 443, 610, 716
FatI	CATG	6 cut(s)	9, 39, 115, 414, 420, 482
FauI	CCCGC	4 cut(s)	351, 396, 553, 559
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	6 cut(s)	6, 97, 213, 241, 376, 625
FokI	GGATG	2 cut(s)	122, 625
Fsp4HI	GCNGC	6 cut(s)	6, 97, 213, 241, 376, 625
GlaI	GCGC	5 cut(s)	100, 216, 277, 448, 565
GluI	GCNGC	6 cut(s)	6, 97, 213, 241, 376, 625
GsaI	CCCAGC	1 cut(s)	361
HaeIII	GGCC	3 cut(s)	5, 329, 753
HapII	CCGG	3 cut(s)	450, 487, 765
HgaI	GACGC	2 cut(s)	77, 714
HhaI	GCGC	5 cut(s)	101, 217, 278, 449, 566
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	6 cut(s)	13, 43, 119, 418, 424, 486
Hin6I	GCGC	5 cut(s)	99, 215, 276, 447, 564
HinP1I	GCGC	5 cut(s)	99, 215, 276, 447, 564
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	3 cut(s)	450, 487, 765
HphI	GGTGA	2 cut(s)	700, 754
Hpy166II	GTNNAC	4 cut(s)	67, 88, 205, 510
Hpy188I	TCNGA	2 cut(s)	546, 639
Hpy188III	TCNNGA	2 cut(s)	147, 430
Hpy8I	GTNNAC	4 cut(s)	67, 88, 205, 510
Hpy99I	CGWCG	3 cut(s)	71, 560, 708
HpyAV	CCTTC	4 cut(s)	574, 691, 744, 769
HpyCH4III	ACNGT	3 cut(s)	291, 521, 672
HpyCH4IV	ACGT	2 cut(s)	555, 588
HpyCH4V	TGCA	3 cut(s)	27, 297, 384
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 246, 303, 381, 624
HpyF3I	CTNAG	4 cut(s)	218, 438, 620, 655
HpySE526I	ACGT	2 cut(s)	555, 588
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	13, 43, 119, 418, 424, 486
HspAI	GCGC	5 cut(s)	99, 215, 276, 447, 564
KroI	GCCGGC	1 cut(s)	449
KroNI	GCCGGC	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	406, 432, 546
LmnI	GCTCC	3 cut(s)	19, 161, 254
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	2 cut(s)	100, 130
MaeII	ACGT	2 cut(s)	555, 588
MaeIII	GTNAC	5 cut(s)	322, 365, 521, 688, 698
MalI	GATC	3 cut(s)	408, 434, 548
MboI	GATC	3 cut(s)	406, 432, 546
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	1 cut(s)	75
MmeI	TCCRAC	2 cut(s)	646, 762
MnlI	CCTC	8 cut(s)	27, 152, 154, 322, 402, 437, 721, 727
MroNI	GCCGGC	1 cut(s)	449
MseI	TTAA	2 cut(s)	234, 591
MslI	CAYNNNNRTG	2 cut(s)	292, 419
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	3 cut(s)	450, 487, 765
MspR9I	CCNGG	4 cut(s)	81, 191, 662, 721
MvaI	CCWGG	4 cut(s)	81, 191, 662, 721
MvnI	CGCG	4 cut(s)	101, 447, 560, 566
MwoI	GCNNNNNNNGC	5 cut(s)	11, 246, 303, 381, 624
NaeI	GCCGGC	1 cut(s)	451
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	406, 432, 546
NgoMIV	GCCGGC	1 cut(s)	449
NlaIII	CATG	6 cut(s)	13, 43, 119, 418, 424, 486
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	500
NmuCI	GTSAC	5 cut(s)	322, 365, 521, 688, 698
NspV	TTCGAA	1 cut(s)	264
OliI	CACNNNNGTG	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	605
PdiI	GCCGGC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	501
Pfl23II	CGTACG	1 cut(s)	585
PflMI	CCANNNNNTGG	1 cut(s)	720
PfoI	TCCNGGA	1 cut(s)	719
PkrI	GCNGC	6 cut(s)	7, 98, 214, 242, 377, 626
Psp6I	CCWGG	4 cut(s)	79, 189, 660, 719
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	4 cut(s)	79, 189, 660, 719
PspLI	CGTACG	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	15
RsaI	GTAC	6 cut(s)	55, 173, 185, 443, 530, 587
RsaNI	GTAC	6 cut(s)	54, 172, 184, 442, 529, 586
RseI	CAYNNNNRTG	2 cut(s)	292, 419
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	234, 591
SatI	GCNGC	6 cut(s)	6, 97, 213, 241, 376, 625
Sau3AI	GATC	3 cut(s)	406, 432, 546
ScaI	AGTACT	1 cut(s)	530
ScrFI	CCNGG	4 cut(s)	81, 191, 662, 721
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	100, 130
SfuI	TTCGAA	1 cut(s)	264
SmiMI	CAYNNNNRTG	2 cut(s)	292, 419
SmlI	CTYRAG	3 cut(s)	244, 269, 428
SmoI	CTYRAG	3 cut(s)	244, 269, 428
Sse9I	AATT	1 cut(s)	75
StyD4I	CCNGG	4 cut(s)	79, 189, 660, 719
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	291, 521, 672
TaiI	ACGT	2 cut(s)	558, 591
TaqI	TCGA	3 cut(s)	66, 264, 405
TaqII	GACCGA	1 cut(s)	717
TasI	AATT	1 cut(s)	75
TatI	WGTACW	2 cut(s)	183, 528
TauI	GCSGC	5 cut(s)	8, 99, 243, 378, 627
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	2 cut(s)	234, 591
Tru9I	TTAA	2 cut(s)	234, 591
TscAI	CASTG	6 cut(s)	51, 97, 142, 296, 370, 703
TseFI	GTSAC	5 cut(s)	322, 365, 521, 688, 698
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	5 cut(s)	322, 365, 521, 688, 698
TspGWI	ACGGA	3 cut(s)	189, 213, 597
TspRI	CASTG	6 cut(s)	51, 97, 142, 296, 370, 703
Van91I	CCANNNNNTGG	1 cut(s)	720
XapI	RAATTY	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.