Prupe.2G237000_v2.0.a1

Pollen allergen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014941
Physical Location & Seq
Reverse (-)
25821593 .. 25823533
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G237000.1

Sequence Viewer

Length: 780 bp
ATGGCTACCATGGCTCTTCTCTGCATTGTCTCTCTCATAGCATTGGCAAGTACAATTGTTGAGGCCAGAATTCCTGGTGTTTACTCTGGCGAGGCATGGCAGGGTGCTCATGCTACTTTCTATGGCGGCAGTGACGCCTCTGGAACTATGGGAGGAGCATGTGGGTACGGAAATTTGTACAGCCAAGGCTACGGTGTGAACACAGCGGCACTGAGCACAGCTCTTTTTAACAACGGTTTGAGCTGTGGAGCTTGCTTCGAGATCAAGTGTGCAAATCAGCCTCAATGGTGTCACTCTGGTAGCCCCTCCATTTTTGTCACCGCCACTAACTTTTGCCCTCCAAATTACGCCTTGCCCAACGACAATGGCGGCTGGTGCAATCCTCCTCGCTCCCACTTCGATCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGCATTGTCCCTGTCTCTTATCGCCGGGTGCCATGCCGGAAGCAAGGTGGGATCAGGTTCACGGTCAACGGCTTCAAGTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATAGTGAAGGTGAGCGTGAAAGGGTCGAAGACTGGATGGATGAGCTTGAGCCGCAACTGGGGTCAGAACTGGCAGTCAAATGCTGTCTTGGCTGGACAGTCACTCTCCTTCAGGGTCACAGGGAGTGACCGGCGCACTTCCACTTCCTGGAACATTGTCCCTGCCAATTGGCAGTTTGGCCAAACTTTCACTGGAAAGAATTTCAGAGTCTAA

Protein Analysis

260

Amino Acids

27.83

Weight (kDa)

9.41

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39700 AT3G55500
fragaria_vesca FvH4_7g22700
malus_domestica MD01G1135600.v1.1 MD07G1200300.v1.1
prunus_persica Prupe.2G237000_v2.0.a1
pyrus_communis pycom01g15640 pycom07g18720
rosa_chinensis RchiOBHm_Chr1g0367791
rosa_laevigata RLG00000027263
rosa_multiflora Rmu_ssc0000395.1_g000022
rosa_roxburghii Rroxscaffold_4G00289220
rosa_rugosa Rorug01G0336600
rosa_samantha Rh1BG305700 Rh1CG321300
rosa_wichuraiana Rw1G030600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 714
AccII CGCG 2 cut(s) 441, 554
AciI CCGC 7 cut(s) 126, 206, 321, 369, 439, 554, 619
AclWI GGATC 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 3 cut(s) 69, 172, 766
AcuI CTGAAG 1 cut(s) 661
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 5 cut(s) 52, 167, 179, 437, 524
AfiI CCNNNNNNNGG 2 cut(s) 625, 714
AgsI TTSAA 2 cut(s) 520, 529
AjnI CCWGG 2 cut(s) 73, 713
AluBI AGCT 4 cut(s) 221, 243, 251, 612
AluI AGCT 4 cut(s) 221, 243, 251, 612
Alw21I GWGCWC 2 cut(s) 109, 218
Alw26I GTCTC 2 cut(s) 34, 463
AlwI GGATC 1 cut(s) 503
AoxI GGCC 2 cut(s) 63, 745
ApoI RAATTY 3 cut(s) 69, 172, 766
AspLEI GCGC 2 cut(s) 443, 702
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 3 cut(s) 310, 535, 589
BalI TGGCCA 1 cut(s) 747
BanI GGYRCC 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 602
Bbv12I GWGCWC 2 cut(s) 109, 218
BccI CCATC 1 cut(s) 597
BceAI ACGGC 1 cut(s) 529
BciT130I CCWGG 2 cut(s) 75, 715
BclI TGATCA 1 cut(s) 540
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 2 cut(s) 34, 463
BisI GCNGC 4 cut(s) 127, 207, 370, 619
BlsI GCNGC 4 cut(s) 128, 208, 371, 620
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 3 cut(s) 75, 470, 715
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 3 cut(s) 75, 470, 715
BmrI ACTGGG 1 cut(s) 634
BmuI ACTGGG 1 cut(s) 634
BpiI GAAGAC 1 cut(s) 602
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpuEI CTTGAG 2 cut(s) 407, 634
BpuMI CCSGG 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 9, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 714
Bse118I RCCGGY 2 cut(s) 443, 696
Bse1I ACTGG 4 cut(s) 604, 629, 641, 763
BseBI CCWGG 2 cut(s) 75, 715
BseDI CCNNGG 2 cut(s) 9, 184
BseGI GGATG 2 cut(s) 608, 612
BseLI CCNNNNNNNGG 2 cut(s) 625, 714
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 4 cut(s) 604, 629, 641, 763
BseRI GAGGAG 2 cut(s) 168, 375
BsgI GTGCAG 1 cut(s) 579
Bsh1236I CGCG 2 cut(s) 441, 554
BshFI GGCC 2 cut(s) 65, 747
BshNI GGYRCC 1 cut(s) 472
BsiHKAI GWGCWC 2 cut(s) 109, 218
BsiSI CCGG 4 cut(s) 444, 469, 481, 697
BslFI GGGAC 2 cut(s) 437, 710
BslI CCNNNNNNNGG 2 cut(s) 625, 714
BsmAI GTCTC 2 cut(s) 34, 463
BsmFI GGGAC 2 cut(s) 437, 710
BsnI GGCC 2 cut(s) 65, 747
Bsp1286I GDGCHC 2 cut(s) 109, 218
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 5 cut(s) 261, 400, 426, 495, 540
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 7 cut(s) 126, 206, 321, 369, 439, 554, 619
BspANI GGCC 2 cut(s) 65, 747
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 2 cut(s) 441, 554
BspLI GGNNCC 1 cut(s) 474
BspPI GGATC 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 472
BsrFI RCCGGY 2 cut(s) 443, 696
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 4 cut(s) 604, 629, 641, 763
BssAI RCCGGY 2 cut(s) 443, 696
BssECI CCNNGG 2 cut(s) 9, 184
BssMI GATC 5 cut(s) 261, 400, 426, 495, 540
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 9, 184
Bst2UI CCWGG 2 cut(s) 75, 715
Bst4CI ACNGT 4 cut(s) 194, 236, 508, 666
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 253, 445
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 608, 612
BstFNI CGCG 2 cut(s) 441, 554
BstHHI GCGC 2 cut(s) 443, 702
BstKTI GATC 5 cut(s) 264, 403, 429, 498, 543
BstMAI GTCTC 2 cut(s) 34, 463
BstMBI GATC 5 cut(s) 261, 400, 426, 495, 540
BstMWI GCNNNNNNNGC 4 cut(s) 11, 375, 618, 656
BstNI CCWGG 2 cut(s) 75, 715
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 3 cut(s) 73, 468, 713
BstUI CGCG 2 cut(s) 441, 554
BstV2I GAAGAC 1 cut(s) 602
BsuRI GGCC 2 cut(s) 65, 747
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 608, 612
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 3 cut(s) 136, 209, 756
Cac8I GCNNGC 2 cut(s) 253, 445
CfoI GCGC 2 cut(s) 443, 702
Cfr10I RCCGGY 2 cut(s) 443, 696
CseI GACGC 1 cut(s) 143
Csp6I GTAC 5 cut(s) 51, 166, 178, 436, 523
CviAII CATG 7 cut(s) 10, 96, 110, 159, 409, 415, 477
CviQI GTAC 5 cut(s) 51, 166, 178, 436, 523
DdeI CTNAG 1 cut(s) 212
DpnI GATC 5 cut(s) 263, 402, 428, 497, 542
DpnII GATC 5 cut(s) 261, 400, 426, 495, 540
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 9, 184
Eco57I CTGAAG 1 cut(s) 661
EcoRI GAATTC 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 73, 713
EcoT14I CCWWGG 2 cut(s) 9, 184
ErhI CCWWGG 2 cut(s) 9, 184
FaeI CATG 7 cut(s) 13, 99, 113, 162, 412, 418, 480
FaqI GGGAC 2 cut(s) 437, 710
FatI CATG 7 cut(s) 9, 95, 109, 158, 408, 414, 476
FauI CCCGC 1 cut(s) 547
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 4 cut(s) 127, 207, 370, 619
FokI GGATG 2 cut(s) 615, 619
Fsp4HI GCNGC 4 cut(s) 127, 207, 370, 619
GlaI GCGC 2 cut(s) 442, 701
GluI GCNGC 4 cut(s) 127, 207, 370, 619
HaeIII GGCC 2 cut(s) 65, 747
HapII CCGG 4 cut(s) 444, 469, 481, 697
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 443, 702
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 7 cut(s) 13, 99, 113, 162, 412, 418, 480
Hin6I GCGC 2 cut(s) 441, 700
HinP1I GCGC 2 cut(s) 441, 700
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 1 cut(s) 774
HpaII CCGG 4 cut(s) 444, 469, 481, 697
HphI GGTGA 3 cut(s) 310, 535, 589
Hpy166II GTNNAC 4 cut(s) 82, 199, 504, 511
Hpy188I TCNGA 2 cut(s) 633, 773
Hpy188III TCNNGA 3 cut(s) 141, 259, 424
Hpy8I GTNNAC 4 cut(s) 82, 199, 504, 511
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 2 cut(s) 568, 685
HpyCH4III ACNGT 4 cut(s) 194, 236, 508, 666
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 4 cut(s) 24, 272, 378, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 375, 618, 656
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 549
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 7 cut(s) 13, 99, 113, 162, 412, 418, 480
HspAI GCGC 2 cut(s) 441, 700
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 5 cut(s) 261, 400, 426, 495, 540
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 3 cut(s) 155, 248, 395
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 6 cut(s) 131, 290, 316, 666, 682, 692
MalI GATC 5 cut(s) 263, 402, 428, 497, 542
MboI GATC 5 cut(s) 261, 400, 426, 495, 540
MboII GAAGA 2 cut(s) 8, 607
MfeI CAATTG 2 cut(s) 54, 733
MhlI GDGCHC 2 cut(s) 109, 218
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 6 cut(s) 54, 69, 172, 343, 733, 766
MluNI TGGCCA 1 cut(s) 747
Mox20I TGGCCA 1 cut(s) 747
MroNI GCCGGC 1 cut(s) 443
MscI TGGCCA 1 cut(s) 747
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 747
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 4 cut(s) 444, 469, 481, 697
MspR9I CCNGG 3 cut(s) 75, 470, 715
MunI CAATTG 2 cut(s) 54, 733
MvaI CCWGG 2 cut(s) 75, 715
MvnI CGCG 2 cut(s) 441, 554
MwoI GCNNNNNNNGC 4 cut(s) 11, 375, 618, 656
NaeI GCCGGC 1 cut(s) 445
NciI CCSGG 1 cut(s) 470
NcoI CCATGG 1 cut(s) 9
NdeII GATC 5 cut(s) 261, 400, 426, 495, 540
NgoMIV GCCGGC 1 cut(s) 443
NlaIII CATG 7 cut(s) 13, 99, 113, 162, 412, 418, 480
NlaIV GGNNCC 1 cut(s) 474
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 6 cut(s) 131, 290, 316, 666, 682, 692
NspI RCATGY 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 445
PflMI CCANNNNNTGG 1 cut(s) 714
PfoI TCCNGGA 1 cut(s) 713
PkrI GCNGC 4 cut(s) 128, 208, 371, 620
Psp6I CCWGG 2 cut(s) 73, 713
PspGI CCWGG 2 cut(s) 73, 713
PspN4I GGNNCC 1 cut(s) 474
RsaI GTAC 5 cut(s) 52, 167, 179, 437, 524
RsaNI GTAC 5 cut(s) 51, 166, 178, 436, 523
RseI CAYNNNNRTG 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 4 cut(s) 127, 207, 370, 619
Sau3AI GATC 5 cut(s) 261, 400, 426, 495, 540
ScaI AGTACT 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 75, 470, 715
SduI GDGCHC 2 cut(s) 109, 218
SetI ASST 8 cut(s) 223, 245, 253, 493, 503, 552, 579, 614
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 422, 613
SmoI CTYRAG 2 cut(s) 422, 613
Sse9I AATT 6 cut(s) 54, 69, 172, 343, 733, 766
SsiI CCGC 7 cut(s) 126, 206, 321, 369, 439, 554, 619
StyD4I CCNGG 3 cut(s) 73, 468, 713
StyI CCWWGG 2 cut(s) 9, 184
TaaI ACNGT 4 cut(s) 194, 236, 508, 666
TaiI ACGT 1 cut(s) 552
TaqI TCGA 3 cut(s) 258, 399, 593
TasI AATT 6 cut(s) 54, 69, 172, 343, 733, 766
TatI WGTACW 3 cut(s) 50, 177, 522
TauI GCSGC 4 cut(s) 129, 209, 372, 621
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 3 cut(s) 136, 216, 763
TseFI GTSAC 6 cut(s) 131, 290, 316, 666, 682, 692
Tsp45I GTSAC 6 cut(s) 131, 290, 316, 666, 682, 692
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 3 cut(s) 136, 216, 763
Van91I CCANNNNNTGG 1 cut(s) 714
XapI RAATTY 3 cut(s) 69, 172, 766
XceI RCATGY 1 cut(s) 162
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.