pycom01g15640

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014941
Physical Location & Seq
Reverse (-)
15424021 .. 15424934
914 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15640.3

Sequence Viewer

Length: 618 bp
ATGGCCGCCATGGCTCCTCTGCTCTGCATTGCTTCTCTCATGGCACTGGCGAGTACCATTGTAGTCGAGGCCAGAATTCCTGGTGTTTACACTGGCGGAGCGTGGCAGGGTGCTCATGCCACCTTCTATGGCGGCAGTGATGCCTCTGGAACTATGGGAGGGGCCTGTGGCTACGGAAATCTGTACAGCCAGGGCTATGGAGTGAACACGGCGGCGCTGAGCACGGCACTCTTCAACAACGGTTTGAGCTGTGGAGCTTGCTTCGAAATCAAGTGCGCGAATCAGCCTCAGTGGTGCAAATCTGGCAGTCCCTCCATTTTTGTCACGGCCACAAACTTTTGCCCTCCAAACTTCGCCCAGCCCAGCGACAATGGCGGTTGGTGCAACCCTCCTCGCACCCACTTCGATCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGCATTGTCCCTGTTTCTTACCGCCGGGTGCCATGCCGGAAGCAAGGTGGAATCAGGTTCACAATCAACGGCCACAAGTACTTCAACTTGGTTCTGATCGATCACAACGTCGCGGGCGCAGGGGATATAGTGAAGGTGTACGTTAAAGGACGAACACTCCGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

206

Amino Acids

21.7

Weight (kDa)

9.12

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39700 AT3G55500
fragaria_vesca FvH4_7g22700
malus_domestica MD01G1135600.v1.1 MD07G1200300.v1.1
prunus_persica Prupe.2G237000_v2.0.a1
pyrus_communis pycom01g15640 pycom07g18720
rosa_chinensis RchiOBHm_Chr1g0367791
rosa_laevigata RLG00000027263
rosa_multiflora Rmu_ssc0000395.1_g000022
rosa_roxburghii Rroxscaffold_4G00289220
rosa_rugosa Rorug01G0336600
rosa_samantha Rh1BG305700 Rh1CG321300
rosa_wichuraiana Rw1G030600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AccII CGCG 3 cut(s) 278, 447, 563
AciI CCGC 8 cut(s) 6, 96, 132, 212, 375, 445, 472, 563
AcoI YGGCCR 3 cut(s) 3, 327, 520
AcsI RAATTY 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 5 cut(s) 55, 185, 443, 530, 590
AgsI TTSAA 2 cut(s) 235, 535
AjnI CCWGG 2 cut(s) 79, 189
AluBI AGCT 2 cut(s) 249, 257
AluI AGCT 2 cut(s) 249, 257
Alw21I GWGCWC 2 cut(s) 115, 224
AoxI GGCC 5 cut(s) 3, 69, 162, 327, 520
ApoI RAATTY 1 cut(s) 75
AspLEI GCGC 4 cut(s) 217, 278, 449, 569
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 476
AsuII TTCGAA 1 cut(s) 264
BanI GGYRCC 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 115, 224
BceAI ACGGC 4 cut(s) 225, 240, 342, 535
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 2 cut(s) 81, 191
BcnI CCSGG 1 cut(s) 476
BfoI RGCGCY 1 cut(s) 218
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 3 cut(s) 6, 133, 213
BlpI GCTNAGC 1 cut(s) 218
BlsI GCNGC 3 cut(s) 7, 134, 214
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 81, 191, 476
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 15, 163, 480
BmrFI CCNGG 3 cut(s) 81, 191, 476
BmsI GCATC 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 218
Bpu14I TTCGAA 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 549
BsaJI CCNNGG 3 cut(s) 9, 190, 610
BsaXI ACNNNNNCTCC 1 cut(s) 591
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 51, 97
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 2 cut(s) 81, 191
BseCI ATCGAT 1 cut(s) 549
BseDI CCNNGG 3 cut(s) 9, 190, 610
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 209, 302
BseNI ACTGG 2 cut(s) 51, 97
BseRI GAGGAG 2 cut(s) 6, 381
BseYI CCCAGC 2 cut(s) 357, 362
Bsh1236I CGCG 3 cut(s) 278, 447, 563
BshFI GGCC 5 cut(s) 5, 71, 164, 329, 522
BshNI GGYRCC 1 cut(s) 478
BshVI ATCGAT 1 cut(s) 549
BsiHKAI GWGCWC 2 cut(s) 115, 224
BsiSI CCGG 3 cut(s) 450, 475, 487
BslFI GGGAC 2 cut(s) 294, 443
BsmFI GGGAC 2 cut(s) 294, 443
BsnI GGCC 5 cut(s) 5, 71, 164, 329, 522
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 115, 224
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 4 cut(s) 406, 432, 546, 550
Bsp1720I GCTNAGC 1 cut(s) 218
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 8 cut(s) 6, 96, 132, 212, 375, 445, 472, 563
BspANI GGCC 5 cut(s) 5, 71, 164, 329, 522
BspCNI CTCAG 2 cut(s) 210, 301
BspDI ATCGAT 1 cut(s) 549
BspFNI CGCG 3 cut(s) 278, 447, 563
BspLI GGNNCC 3 cut(s) 15, 163, 480
BspT104I TTCGAA 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 2 cut(s) 51, 97
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 3 cut(s) 9, 190, 610
BssMI GATC 4 cut(s) 406, 432, 546, 550
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 81, 191
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 3 cut(s) 259, 451, 565
BstDEI CTNAG 2 cut(s) 218, 288
BstDSI CCRYGG 2 cut(s) 9, 610
BstFNI CGCG 3 cut(s) 278, 447, 563
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 4 cut(s) 217, 278, 449, 569
BstKTI GATC 4 cut(s) 409, 435, 549, 553
BstMBI GATC 4 cut(s) 406, 432, 546, 550
BstMWI GCNNNNNNNGC 4 cut(s) 11, 303, 372, 381
BstNI CCWGG 2 cut(s) 81, 191
BstSCI CCNGG 3 cut(s) 79, 189, 474
BstUI CGCG 3 cut(s) 278, 447, 563
BstXI CCANNNNNNTGG 1 cut(s) 197
Bsu15I ATCGAT 1 cut(s) 549
BsuRI GGCC 5 cut(s) 5, 71, 164, 329, 522
BsuTUI ATCGAT 1 cut(s) 549
BtgI CCRYGG 2 cut(s) 9, 610
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 4 cut(s) 44, 90, 142, 296
Cac8I GCNNGC 3 cut(s) 259, 451, 565
CfoI GCGC 4 cut(s) 217, 278, 449, 569
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 549
Csp6I GTAC 5 cut(s) 54, 184, 442, 529, 589
CviAII CATG 6 cut(s) 10, 40, 116, 415, 421, 483
CviQI GTAC 5 cut(s) 54, 184, 442, 529, 589
DdeI CTNAG 2 cut(s) 218, 288
DpnI GATC 4 cut(s) 408, 434, 548, 552
DpnII GATC 4 cut(s) 406, 432, 546, 550
DraIII CACNNNGTG 1 cut(s) 611
EaeI YGGCCR 3 cut(s) 3, 327, 520
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 79, 189
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 6 cut(s) 13, 43, 119, 418, 424, 486
FaqI GGGAC 2 cut(s) 294, 443
FatI CATG 6 cut(s) 9, 39, 115, 414, 420, 482
FauI CCCGC 1 cut(s) 556
Fnu4HI GCNGC 3 cut(s) 6, 133, 213
Fsp4HI GCNGC 3 cut(s) 6, 133, 213
GlaI GCGC 4 cut(s) 216, 277, 448, 568
GluI GCNGC 3 cut(s) 6, 133, 213
GsaI CCCAGC 2 cut(s) 361, 366
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 5 cut(s) 5, 71, 164, 329, 522
HapII CCGG 3 cut(s) 450, 475, 487
HhaI GCGC 4 cut(s) 217, 278, 449, 569
Hin1II CATG 6 cut(s) 13, 43, 119, 418, 424, 486
Hin6I GCGC 4 cut(s) 215, 276, 447, 567
HinP1I GCGC 4 cut(s) 215, 276, 447, 567
HinfI GANTC 2 cut(s) 280, 501
HpaII CCGG 3 cut(s) 450, 475, 487
Hpy166II GTNNAC 4 cut(s) 88, 205, 510, 589
Hpy188I TCNGA 1 cut(s) 546
Hpy188III TCNNGA 2 cut(s) 147, 430
Hpy8I GTNNAC 4 cut(s) 88, 205, 510, 589
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 2 cut(s) 133, 577
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 2 cut(s) 558, 591
HpyCH4V TGCA 3 cut(s) 27, 297, 384
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 303, 372, 381
HpyF3I CTNAG 2 cut(s) 218, 288
HpySE526I ACGT 2 cut(s) 558, 591
Hsp92II CATG 6 cut(s) 13, 43, 119, 418, 424, 486
HspAI GCGC 4 cut(s) 215, 276, 447, 567
KroI GCCGGC 1 cut(s) 449
KroNI GCCGGC 1 cut(s) 451
Kzo9I GATC 4 cut(s) 406, 432, 546, 550
LmnI GCTCC 3 cut(s) 19, 98, 254
LweI GCATC 1 cut(s) 130
MaeII ACGT 2 cut(s) 558, 591
MaeIII GTNAC 1 cut(s) 322
MalI GATC 4 cut(s) 408, 434, 548, 552
MboI GATC 4 cut(s) 406, 432, 546, 550
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 115, 224
MluCI AATT 1 cut(s) 75
MroNI GCCGGC 1 cut(s) 449
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 419
MspI CCGG 3 cut(s) 450, 475, 487
MspR9I CCNGG 3 cut(s) 81, 191, 476
MvaI CCWGG 2 cut(s) 81, 191
MvnI CGCG 3 cut(s) 278, 447, 563
MwoI GCNNNNNNNGC 4 cut(s) 11, 303, 372, 381
NaeI GCCGGC 1 cut(s) 451
NciI CCSGG 1 cut(s) 476
NcoI CCATGG 1 cut(s) 9
NdeII GATC 4 cut(s) 406, 432, 546, 550
NgoMIV GCCGGC 1 cut(s) 449
NlaIII CATG 6 cut(s) 13, 43, 119, 418, 424, 486
NlaIV GGNNCC 3 cut(s) 15, 163, 480
NmeAIII GCCGAG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 322
NspV TTCGAA 1 cut(s) 264
PcsI WCGNNNNNNNCGW 2 cut(s) 555, 607
PdiI GCCGGC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 280, 501
PkrI GCNGC 3 cut(s) 7, 134, 214
Psp6I CCWGG 2 cut(s) 79, 189
PspFI CCCAGC 2 cut(s) 357, 362
PspGI CCWGG 2 cut(s) 79, 189
PspN4I GGNNCC 3 cut(s) 15, 163, 480
PspPI GGNCC 1 cut(s) 162
RsaI GTAC 5 cut(s) 55, 185, 443, 530, 590
RsaNI GTAC 5 cut(s) 54, 184, 442, 529, 589
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 3 cut(s) 6, 133, 213
Sau3AI GATC 4 cut(s) 406, 432, 546, 550
Sau96I GGNCC 1 cut(s) 162
ScaI AGTACT 1 cut(s) 530
ScrFI CCNGG 3 cut(s) 81, 191, 476
SduI GDGCHC 2 cut(s) 115, 224
SetI ASST 8 cut(s) 125, 251, 259, 499, 509, 561, 588, 594
SfaNI GCATC 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 1 cut(s) 75
SsiI CCGC 8 cut(s) 6, 96, 132, 212, 375, 445, 472, 563
StyD4I CCNGG 3 cut(s) 79, 189, 474
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 2 cut(s) 561, 594
TaqI TCGA 4 cut(s) 66, 264, 405, 549
TasI AATT 1 cut(s) 75
TatI WGTACW 2 cut(s) 183, 528
TauI GCSGC 3 cut(s) 8, 135, 215
TfiI GAWTC 2 cut(s) 280, 501
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 4 cut(s) 51, 97, 142, 296
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspGWI ACGGA 2 cut(s) 189, 599
TspRI CASTG 4 cut(s) 51, 97, 142, 296
XapI RAATTY 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.