Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Forward (+)

16591117 .. 16593775

Gene Structure 2659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGTCACGTTTATGTCTTCTCCTTCTCGTTGCGTGTATCGCCGGAGCATTTGCCGGAGACGTCATCGAACTCAATCGATCTCAGAGGGAGTTCGATTATTTCGCTCTATCTCTTCAATGGCCTGGAACCTATTGCCGTGGAACTCGCCATTGTTGCTCCAAAAACGCTTGCTGCAGAGGCTCCGATGCTCCAACTCAATTCACAATTCATGGGTTATGGCCTGACTATAACGATGGTTCGTGGCCTTCATGTTGTTATCGATCTGACTTTAAAGAGAAGGAGATTTCAACGTTGATGGATGGTCTTGAGAAGTACTGGCCTAGTCTCAGTTGTGGTTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGCCACGAGTGGGAGAAACATGGGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTCCTTACCACACTTAATCTCTACTTGAAGCATAATGTCACGGATGTCCTTTATCAAGCTGGCTATGTTGCTTCCAACAGTGAAAAGTATCCTCTAGGAGGTATCGTAACAGCCATTCAGAATGCATTTCATATCACCCCTGAAGTGGTTTGCAAAAGAGATGCAATCGATGAAATACGTATATGCTTCTATAAAGATTTTAAGCCCAGGGACTGTGTTGGTTCACAAGATTTGACATCTAGAAAGTCATGCCCCAAGTACGTAAGTTTGCCGGAATACACGCCATTAGATGGTGAAGCTATGGTTCTGAAGATGCCAACAGAAAGAGAAGCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

259

Amino Acids

29.15

Weight (kDa)

5.98

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	32 - 129	3e-21	Ribonuclease T2 family
Ribonuclease_T2	PF00445	131 - 187	4.7e-07	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccB7I	CCANNNNNTGG	1 cut(s)	731
AclI	AACGTT	1 cut(s)	293
AcuI	CTGAAG	2 cut(s)	603, 770
AcyI	GRCGYC	2 cut(s)	5, 63
AfaI	GTAC	2 cut(s)	317, 701
AfiI	CCNNNNNNNGG	4 cut(s)	388, 539, 586, 731
AgsI	TTSAA	3 cut(s)	119, 291, 469
AjnI	CCWGG	2 cut(s)	124, 647
AluBI	AGCT	3 cut(s)	500, 740, 773
AluI	AGCT	3 cut(s)	500, 740, 773
Alw26I	GTCTC	2 cut(s)	54, 332
AlwNI	CAGNNNCTG	1 cut(s)	654
AoxI	GGCC	5 cut(s)	122, 221, 245, 320, 379
ApeKI	GCWGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	568, 746
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	5 cut(s)	230, 292, 296, 352, 725
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	2 cut(s)	126, 649
BciVI	GTATCC	1 cut(s)	540
BcoDI	GTCTC	2 cut(s)	54, 332
BfaI	CTAG	3 cut(s)	324, 536, 681
BfmI	CTRYAG	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	126, 649
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	3 cut(s)	130, 184, 380
BmrFI	CCNGG	2 cut(s)	126, 649
BmsI	GCATC	3 cut(s)	178, 592, 744
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	329
Bsa29I	ATCGAT	3 cut(s)	79, 262, 609
BsaAI	YACGTR	2 cut(s)	620, 703
BsaHI	GRCGYC	2 cut(s)	5, 63
BsaJI	CCNNGG	3 cut(s)	139, 647, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 539, 586, 731
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	126, 649
BseCI	ATCGAT	3 cut(s)	79, 262, 609
BseDI	CCNNGG	3 cut(s)	139, 647, 648
BseGI	GGATG	2 cut(s)	307, 490
BseLI	CCNNNNNNNGG	4 cut(s)	388, 539, 586, 731
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	98, 343
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	5 cut(s)	124, 223, 247, 322, 381
BshVI	ATCGAT	3 cut(s)	79, 262, 609
BsiSI	CCGG	3 cut(s)	45, 57, 713
BslFI	GGGAC	2 cut(s)	415, 665
BslI	CCNNNNNNNGG	4 cut(s)	388, 539, 586, 731
BsmAI	GTCTC	2 cut(s)	54, 332
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	415, 665
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	5 cut(s)	124, 223, 247, 322, 381
Bsp143I	GATC	2 cut(s)	80, 263
BspANI	GGCC	5 cut(s)	124, 223, 247, 322, 381
BspCNI	CTCAG	2 cut(s)	97, 342
BspDI	ATCGAT	3 cut(s)	79, 262, 609
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	130, 184, 380
BspMAI	CTGCAG	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	139, 647, 648
BssMI	GATC	2 cut(s)	80, 263
BssNI	GRCGYC	2 cut(s)	5, 63
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	2 cut(s)	126, 649
Bst4CI	ACNGT	2 cut(s)	521, 656
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	2 cut(s)	5, 63
BstBAI	YACGTR	2 cut(s)	620, 703
BstC8I	GCNNGC	2 cut(s)	172, 502
BstDEI	CTNAG	2 cut(s)	84, 329
BstDSI	CCRYGG	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	307, 490
BstKTI	GATC	2 cut(s)	83, 266
BstMAI	GTCTC	2 cut(s)	54, 332
BstMBI	GATC	2 cut(s)	80, 263
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 156, 180
BstNI	CCWGG	2 cut(s)	126, 649
BstSCI	CCNGG	2 cut(s)	124, 647
BstSFI	CTRYAG	1 cut(s)	175
BstSNI	TACGTA	2 cut(s)	620, 703
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	11
Bsu15I	ATCGAT	3 cut(s)	79, 262, 609
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	5 cut(s)	124, 223, 247, 322, 381
BsuTUI	ATCGAT	3 cut(s)	79, 262, 609
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	307, 490
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	172, 502
CaiI	CAGNNNCTG	1 cut(s)	654
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	379
ClaI	ATCGAT	3 cut(s)	79, 262, 609
Csp6I	GTAC	2 cut(s)	316, 700
CviAII	CATG	6 cut(s)	212, 252, 351, 398, 425, 690
CviQI	GTAC	2 cut(s)	316, 700
DdeI	CTNAG	2 cut(s)	84, 329
DpnI	GATC	2 cut(s)	82, 265
DpnII	GATC	2 cut(s)	80, 263
DraI	TTTAAA	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco105I	TACGTA	2 cut(s)	620, 703
Eco57I	CTGAAG	2 cut(s)	603, 770
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	124, 647
EcoT22I	ATGCAT	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	6 cut(s)	215, 255, 354, 401, 428, 693
FaqI	GGGAC	2 cut(s)	415, 665
FatI	CATG	6 cut(s)	211, 251, 350, 397, 424, 689
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	2 cut(s)	314, 497
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	3 cut(s)	324, 536, 681
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	5 cut(s)	124, 223, 247, 322, 381
HapII	CCGG	3 cut(s)	45, 57, 713
Hin1I	GRCGYC	2 cut(s)	5, 63
Hin1II	CATG	6 cut(s)	215, 255, 354, 401, 428, 693
HpaII	CCGG	3 cut(s)	45, 57, 713
HphI	GGTGA	2 cut(s)	568, 746
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	5 cut(s)	87, 187, 268, 561, 750
Hpy188III	TCNNGA	3 cut(s)	308, 425, 681
Hpy8I	GTNNAC	1 cut(s)	665
HpyAV	CCTTC	3 cut(s)	35, 258, 274
HpyCH4III	ACNGT	2 cut(s)	521, 656
HpyCH4IV	ACGT	5 cut(s)	10, 63, 293, 619, 702
HpyCH4V	TGCA	5 cut(s)	177, 354, 566, 594, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 156, 180
HpyF3I	CTNAG	2 cut(s)	84, 329
HpySE526I	ACGT	5 cut(s)	10, 63, 293, 619, 702
Hsp92I	GRCGYC	2 cut(s)	5, 63
Hsp92II	CATG	6 cut(s)	215, 255, 354, 401, 428, 693
Kzo9I	GATC	2 cut(s)	80, 263
LmnI	GCTCC	4 cut(s)	47, 164, 188, 196
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	3 cut(s)	178, 592, 744
MaeI	CTAG	3 cut(s)	324, 536, 681
MaeII	ACGT	5 cut(s)	10, 63, 293, 619, 702
MaeIII	GTNAC	3 cut(s)	6, 478, 547
MalI	GATC	2 cut(s)	82, 265
MboI	GATC	2 cut(s)	80, 263
MboII	GAAGA	4 cut(s)	11, 107, 402, 763
MluCI	AATT	3 cut(s)	200, 207, 436
MmeI	TCCRAC	2 cut(s)	218, 540
MnlI	CCTC	4 cut(s)	81, 173, 533, 543
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	3 cut(s)	273, 456, 642
MslI	CAYNNNNRTG	2 cut(s)	13, 349
MspI	CCGG	3 cut(s)	45, 57, 713
MspR9I	CCNGG	2 cut(s)	126, 649
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	126, 649
MwoI	GCNNNNNNNGC	3 cut(s)	41, 156, 180
NdeII	GATC	2 cut(s)	80, 263
NlaIII	CATG	6 cut(s)	215, 255, 354, 401, 428, 693
NlaIV	GGNNCC	3 cut(s)	130, 184, 380
NmuCI	GTSAC	2 cut(s)	6, 478
NsiI	ATGCAT	1 cut(s)	568
PagI	TCATGA	1 cut(s)	424
PasI	CCCWGGG	1 cut(s)	648
PctI	GAATGC	1 cut(s)	568
PflMI	CCANNNNNTGG	1 cut(s)	731
PkrI	GCNGC	1 cut(s)	176
Ppu21I	YACGTR	2 cut(s)	620, 703
Psp1406I	AACGTT	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	124, 647
PspGI	CCWGG	2 cut(s)	124, 647
PspN4I	GGNNCC	3 cut(s)	130, 184, 380
PspPI	GGNCC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	654
RsaI	GTAC	2 cut(s)	317, 701
RsaNI	GTAC	2 cut(s)	316, 700
RseI	CAYNNNNRTG	2 cut(s)	13, 349
SaqAI	TTAA	3 cut(s)	273, 456, 642
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	80, 263
Sau96I	GGNCC	1 cut(s)	379
ScaI	AGTACT	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	126, 649
SfaNI	GCATC	3 cut(s)	178, 592, 744
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	2 cut(s)	13, 349
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SnaBI	TACGTA	2 cut(s)	620, 703
Sse9I	AATT	3 cut(s)	200, 207, 436
SspMI	CTAG	3 cut(s)	324, 536, 681
StyD4I	CCNGG	2 cut(s)	124, 647
TaaI	ACNGT	2 cut(s)	521, 656
TaiI	ACGT	5 cut(s)	13, 66, 296, 622, 705
TaqI	TCGA	5 cut(s)	69, 79, 96, 262, 609
TasI	AATT	3 cut(s)	200, 207, 436
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	3 cut(s)	273, 456, 642
Tru9I	TTAA	3 cut(s)	273, 456, 642
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	2 cut(s)	6, 478
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	2 cut(s)	6, 478
TspDTI	ATGAA	5 cut(s)	200, 240, 413, 560, 627
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	526
Van91I	CCANNNNNTGG	1 cut(s)	731
XagI	CCTNNNNNAGG	1 cut(s)	537
XbaI	TCTAGA	1 cut(s)	680
XspI	CTAG	3 cut(s)	324, 536, 681
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.