Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Forward (+)

20452427 .. 20453255

Gene Structure 829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTGAAAGTTCAGGTAGGAGAAGTCTTGATAGGTTAATTACTAGAGAACCAGAAGGTTTGGGTGGACATTTAGTTAATGAAGAGGCAAAAGAGCACACTGATAGGGAAGATAATGTGGAAGAGCACATTGATGGCAATGTAGTTGTTGATAATTTGGGTAATGATGAAAATGAGAATGGTACAGGACATAATGATCATGTGAATGATGCTCCGGTGAATATTTTTGACCCAAGAAATTGGGATAGTTTGGATAAAAAGTTGATAGATTTGTTGGTAGAAAAGGGTCCTCTTAGAGATCTTTCAATAGAAAATGGTCCTCCAGACAAGTTCAATAGACGTTTCAGTTCAAAATTCTACACTCGGTTTTTAGGAAATGGAGAGAAATATGATAGAGAGTGGACTTGCCCAGTTGTTAGACTTGCATATCGAATATTGTTAACCGTGCTTGTTACTGTTGCTTCAGCTGAGAGGAGTTTTTCCAAGTTAAAGTTATTGAAGTCTTATTTGCGATCAACTATGTCACAAGAAAGGCTAAATGGACTTGCTTTGATTTCGATTGAGAACGAATATCTTGGAAAAATCAATTGTGATCAGCTAATTGATCAGTTTGCAGGTAAGAAGGCAAGGAGATGGATTTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

215

Amino Acids

24.62

Weight (kDa)

5.81

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimer_Tnp_hAT	PF05699	135 - 190	2.1e-12	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	306, 334, 351, 499, 643
AluBI	AGCT	2 cut(s)	467, 598
AluI	AGCT	2 cut(s)	467, 598
Alw21I	GWGCWC	2 cut(s)	99, 129
ApoI	RAATTY	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	287, 317
AsuHPI	GGTGA	2 cut(s)	17, 229
AvaII	GGWCC	2 cut(s)	287, 317
Bbv12I	GWGCWC	2 cut(s)	99, 129
BccI	CCATC	2 cut(s)	128, 627
BclI	TGATCA	3 cut(s)	196, 592, 604
BfaI	CTAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	605
BglII	AGATCT	1 cut(s)	298
Bme18I	GGWCC	2 cut(s)	287, 317
BmgT120I	GGNCC	2 cut(s)	287, 317
BmiI	GGNNCC	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	487
BsiHKAI	GWGCWC	2 cut(s)	99, 129
BsiSI	CCGG	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	99, 129
Bsp143I	GATC	5 cut(s)	196, 298, 512, 592, 604
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	605
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	410
BssMI	GATC	5 cut(s)	196, 298, 512, 592, 604
Bst4CI	ACNGT	2 cut(s)	445, 457
Bst6I	CTCTTC	2 cut(s)	78, 117
BstDEI	CTNAG	2 cut(s)	293, 468
BstKTI	GATC	5 cut(s)	199, 301, 515, 595, 607
BstMBI	GATC	5 cut(s)	196, 298, 512, 592, 604
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	287, 317
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	3 cut(s)	467, 535, 598
CviKI_1	RGCY	3 cut(s)	467, 535, 598
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	293, 468
DpnI	GATC	5 cut(s)	198, 300, 514, 594, 606
DpnII	GATC	5 cut(s)	196, 298, 512, 592, 604
Eam1104I	CTCTTC	2 cut(s)	78, 117
EarI	CTCTTC	2 cut(s)	78, 117
Eco47I	GGWCC	2 cut(s)	287, 317
Eco57I	CTGAAG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	287
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	192, 201, 390, 427, 521
FatI	CATG	1 cut(s)	199
FbaI	TGATCA	3 cut(s)	196, 592, 604
FspBI	CTAG	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	306
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HpaI	GTTAAC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	2 cut(s)	17, 229
Hpy166II	GTNNAC	3 cut(s)	68, 402, 441
Hpy188III	TCNNGA	2 cut(s)	29, 323
Hpy8I	GTNNAC	3 cut(s)	68, 402, 441
HpyAV	CCTTC	2 cut(s)	50, 616
HpyCH4III	ACNGT	2 cut(s)	445, 457
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	2 cut(s)	425, 614
HpyF3I	CTNAG	2 cut(s)	293, 468
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	1 cut(s)	203
Ksp22I	TGATCA	3 cut(s)	196, 592, 604
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	196, 298, 512, 592, 604
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	66, 171, 228, 336, 423, 600
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	2 cut(s)	451, 522
MalI	GATC	5 cut(s)	198, 300, 514, 594, 606
MboI	GATC	5 cut(s)	196, 298, 512, 592, 604
MboII	GAAGA	3 cut(s)	95, 122, 134
MfeI	CAATTG	1 cut(s)	586
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	99, 129
MluCI	AATT	6 cut(s)	39, 154, 238, 353, 586, 600
MnlI	CCTC	4 cut(s)	79, 300, 330, 465
MseI	TTAA	4 cut(s)	38, 78, 440, 488
MslI	CAYNNNNRTG	2 cut(s)	132, 204
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	586
NdeII	GATC	5 cut(s)	196, 298, 512, 592, 604
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	287, 317
PspPPI	RGGWCCY	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	2 cut(s)	132, 204
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	38, 78, 440, 488
Sau3AI	GATC	5 cut(s)	196, 298, 512, 592, 604
Sau96I	GGNCC	2 cut(s)	287, 317
SduI	GDGCHC	2 cut(s)	99, 129
SetI	ASST	7 cut(s)	19, 38, 61, 343, 469, 600, 619
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	2 cut(s)	287, 317
SmiMI	CAYNNNNRTG	2 cut(s)	132, 204
Sse9I	AATT	6 cut(s)	39, 154, 238, 353, 586, 600
SspI	AATATT	2 cut(s)	223, 435
SspMI	CTAG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	445, 457
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	430, 557
TasI	AATT	6 cut(s)	39, 154, 238, 353, 586, 600
Tru1I	TTAA	4 cut(s)	38, 78, 440, 488
Tru9I	TTAA	4 cut(s)	38, 78, 440, 488
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	522
Tsp45I	GTSAC	1 cut(s)	522
TspDTI	ATGAA	2 cut(s)	96, 183
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	2 cut(s)	287, 317
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.